View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_high_26 (Length: 284)
Name: NF11828_high_26
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 47806515 - 47806254
Alignment:
| Q |
1 |
ttcagttagtccttttctcacctcaacattttcctcaaattccttaaagaacatacaaagtttattggttaacaaaagacaatacaggacaagtgattat |
100 |
Q |
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| T |
47806515 |
ttcagttagtccttttctcacctcaacattttcctcaaattccttaaagaacatacaaagtttattggttaacaaaagacaataaaggacaaatgattat |
47806416 |
T |
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| Q |
101 |
tcaaaatgatattttttgtttggataaaattgcatatctgcatgagcatgattttaagataaaattactg-aaagtacatgtttcaaaatcaattgattt |
199 |
Q |
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| T |
47806415 |
tcaaaatgatattttttgtttggataaaattgcatatctgcatgagcatgattttaagataaaattactgaaaagtacatgtttcaaaatcaattgattt |
47806316 |
T |
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| Q |
200 |
taaacatgtaaataccaataaagtgaagaaaaaaatcaattgtttttatgctcctttgaagt |
261 |
Q |
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| T |
47806315 |
taaacatgtaaataccaataaagtgaagaaaaaaatcaattgtttttatgctcctttgaagt |
47806254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 47803570 - 47803499
Alignment:
| Q |
123 |
gataaaattgcatatctgcatgagcatgattttaagataaaattactgaaa-gtacatgtttcaaaatcaat |
193 |
Q |
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| T |
47803570 |
gataaaattgcatatttacatgaacacggttatgagatgaaattactgaaaagtacatgtttcaaaatcaat |
47803499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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