View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_high_3 (Length: 611)
Name: NF11828_high_3
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Original strand, 42529822 - 42530418
Alignment:
| Q |
19 |
cttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaaaccaacta |
118 |
Q |
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| T |
42529822 |
cttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaaaccaacta |
42529921 |
T |
|
| Q |
119 |
tatttatccttctttacaagaaagagttattccttactctcataaaccgaacaatttctgtatggaactttcgtggagaactggttacatcattggagga |
218 |
Q |
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| T |
42529922 |
tatttatccttctttacaagaaagagttattccttactctcataaaccgaacaatttctgtatggaactttcgtggagaactggttacatcattggagga |
42530021 |
T |
|
| Q |
219 |
tcacttgttacggcatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgac |
318 |
Q |
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| T |
42530022 |
tcacttgttacgacatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgac |
42530121 |
T |
|
| Q |
319 |
tctgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctt |
418 |
Q |
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| T |
42530122 |
tctgaagatcaatcgaaggaaaccaatgcggtaggttccatcaatgtgagcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctt |
42530221 |
T |
|
| Q |
419 |
tggagtgcattgattcatctcaaataatgtcagtt------ccagaggctttggagggtatagcaatcctcta--------ttatgatgaagaccggaac |
504 |
Q |
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| T |
42530222 |
tggagtgcattgattcatctcaaataatgtcagttccagtcccagaggctttggagggtataaccaccctctattatgaatttatgatgaagaccggaac |
42530321 |
T |
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| Q |
505 |
acgatttatacgggtgacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttcatctca |
601 |
Q |
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| T |
42530322 |
gcgatttatacgggtaacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggaataggttttattgtttcttctca |
42530418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 23 - 601
Target Start/End: Original strand, 42535545 - 42536120
Alignment:
| Q |
23 |
tagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaaaccaactatatt |
122 |
Q |
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| T |
42535545 |
tagtcatgcaggacaatgtcaaccttcagattcttgacttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatt |
42535644 |
T |
|
| Q |
123 |
tatccttctttacaagaaagagttattccttactctcataaaccgaacaatttctgtatggaactttcgtggagaactggttacatcattggaggatcac |
222 |
Q |
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| T |
42535645 |
tatctttctatgcaagaaacagttattccttactctcaaaaaccaaacaaattttgtatggaactttcatggagaactggttacatcattggaggatcac |
42535744 |
T |
|
| Q |
223 |
ttgttacggcatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctg |
322 |
Q |
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| T |
42535745 |
ttgttacggcatccactatggcatccagacttcaa---aaacaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctg |
42535841 |
T |
|
| Q |
323 |
aagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttgga |
422 |
Q |
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| T |
42535842 |
aagatcaatcgatggttaccaatgtgataggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttgga |
42535941 |
T |
|
| Q |
423 |
gtgcattgattcatctcaaataatgtcagttccagaggctttggagggtatagcaatcctctattatgatgaagaccggaacacgatttatacgggtgac |
522 |
Q |
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|||||||||||||||| ||| |||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||| || |
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| T |
42535942 |
gtgcattgattcatctaaaaaaatgtcagttacagaggctttggagggtataaccaccctctattatgatgaagaccggaacgcgatttatacgggtaac |
42536041 |
T |
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| Q |
523 |
agacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttcatctca |
601 |
Q |
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| T |
42536042 |
agacatggtcatgttcatgtctggtccaactccaaccaactaatgataaaaaaggaataggttttattgtttcttctca |
42536120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 27825681 - 27825775
Alignment:
| Q |
143 |
agttattccttactctcataaaccgaacaatttctgtatggaactttcgtggagaactggttacatcattggaggatcacttgttacggcatcca |
237 |
Q |
| |
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|||||||||||||| ||| ||| |||||| ||||||| |||||||||||||| ||||| || |||||||| ||||||||||||||| |||||||| |
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| T |
27825681 |
agttattccttactttcagaaatcgaacagtttctgtctggaactttcgtggcgaacttgtcacatcatttgaggatcacttgttatggcatcca |
27825775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
352 |
ggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaa |
413 |
Q |
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| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 553
Target Start/End: Original strand, 27826179 - 27826252
Alignment:
| Q |
480 |
cctctattatgatgaagaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaact |
553 |
Q |
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| T |
27826179 |
cctcttttatgatgaagaccggaacgagatctatactggtaatagacatggttttgttcatgtatggtccaact |
27826252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 27825797 - 27825857
Alignment:
| Q |
271 |
tacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaat |
331 |
Q |
| |
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|||||||||||||||||| ||||||| || || ||||||| | ||| ||||||||||||| |
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| T |
27825797 |
tacataacaagtgatcaggacctgattatatcgtactgcaaagctgaatctgaagatcaat |
27825857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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