View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11828_high_31 (Length: 252)

Name: NF11828_high_31
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11828_high_31
NF11828_high_31
[»] chr6 (13 HSPs)
chr6 (1-252)||(2975068-2975319)
chr6 (185-243)||(16107852-16107910)
chr6 (203-252)||(29518666-29518715)
chr6 (203-243)||(2377926-2377966)
chr6 (185-252)||(2578763-2578830)
chr6 (156-238)||(2579390-2579473)
chr6 (202-252)||(2579055-2579105)
chr6 (202-252)||(2579818-2579868)
chr6 (202-252)||(16454738-16454788)
chr6 (50-195)||(2975390-2975538)
chr6 (156-243)||(3409459-3409545)
chr6 (50-91)||(2378071-2378112)
chr6 (202-243)||(35210375-35210416)
[»] chr1 (12 HSPs)
chr1 (56-252)||(66267-66467)
chr1 (156-243)||(22077394-22077481)
chr1 (162-243)||(22077734-22077815)
chr1 (204-252)||(50051971-50052019)
chr1 (202-243)||(34364679-34364720)
chr1 (203-243)||(44290769-44290809)
chr1 (202-252)||(37850546-37850596)
chr1 (202-243)||(9956081-9956122)
chr1 (202-247)||(31767107-31767151)
chr1 (185-252)||(48588789-48588856)
chr1 (185-243)||(41157166-41157223)
chr1 (137-243)||(47380046-47380152)
[»] chr8 (8 HSPs)
chr8 (159-252)||(18371895-18371988)
chr8 (202-245)||(147621-147664)
chr8 (156-238)||(1014144-1014225)
chr8 (185-243)||(3037896-3037953)
chr8 (185-243)||(3038217-3038274)
chr8 (202-236)||(9608932-9608966)
chr8 (202-252)||(18372229-18372278)
chr8 (185-243)||(34835047-34835104)
[»] chr7 (7 HSPs)
chr7 (185-252)||(1085544-1085611)
chr7 (203-252)||(37533310-37533359)
chr7 (203-243)||(37532957-37532997)
chr7 (213-243)||(37345753-37345783)
chr7 (202-244)||(45434426-45434467)
chr7 (207-252)||(30253733-30253777)
chr7 (200-244)||(45754885-45754928)
[»] chr3 (9 HSPs)
chr3 (185-243)||(22304367-22304425)
chr3 (202-252)||(15773017-15773067)
chr3 (159-247)||(37990878-37990966)
chr3 (202-243)||(53577537-53577578)
chr3 (203-243)||(22303900-22303940)
chr3 (202-252)||(3135048-3135097)
chr3 (202-247)||(3135400-3135444)
chr3 (56-112)||(22304489-22304548)
chr3 (202-243)||(53577656-53577697)
[»] chr4 (7 HSPs)
chr4 (202-247)||(49076776-49076820)
chr4 (203-243)||(45496723-45496763)
chr4 (202-252)||(44621162-44621212)
chr4 (210-243)||(3340979-3341012)
chr4 (218-247)||(6876060-6876089)
chr4 (202-243)||(10246092-10246133)
chr4 (204-245)||(19895465-19895506)
[»] scaffold0702 (2 HSPs)
scaffold0702 (203-243)||(460-500)
scaffold0702 (50-91)||(314-355)
[»] chr2 (8 HSPs)
chr2 (187-243)||(29676700-29676756)
chr2 (203-243)||(37106096-37106136)
chr2 (202-252)||(6421894-6421944)
chr2 (211-243)||(14745620-14745652)
chr2 (200-244)||(35580667-35580711)
chr2 (203-243)||(36178552-36178592)
chr2 (202-252)||(6421548-6421597)
chr2 (52-86)||(42514962-42514996)
[»] chr5 (4 HSPs)
chr5 (121-245)||(35150175-35150303)
chr5 (162-244)||(38427391-38427474)
chr5 (56-112)||(13415940-13415998)
chr5 (202-243)||(26074400-26074441)
[»] scaffold0391 (2 HSPs)
scaffold0391 (185-233)||(1417-1465)
scaffold0391 (202-252)||(1629-1678)
[»] scaffold0113 (1 HSPs)
scaffold0113 (203-243)||(39626-39666)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2975319 - 2975068
Alignment:
Q  1 cacatcgaggctagaacaaccacattactacgagagacacacccacttacccaaatgtgagtccatctattcaacatgctccctcttcaagaagctctta 100  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2975319 cacatcgaggctagaacaaccacattactcagagagacacacacacttacccaaatgtgagtccatctattcaacatgctccctcttcaagaagctctta 2975220  T
Q  101 gcttgcttgtattttcgtgttggcttctctgcaatggaccggcacaaggaacgtataccgccgttgctggtttctccgcaagaaaccggctgccttagcc 200  Q
    ||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||| ||||||| |||||| |||||||    
T  2975219 gcttgcttgtattttcgtgttggcttctccgcaatggaccgacatatggaacgtataccgccgttgctggtttctccacaagaaatcggctgacttagcc 2975120  T
Q  201 ataccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||||  ||||||||||||||||||| ||||||||| ||||||||||||    
T  2975119 atacccttcttcgaaccggggctctgatatcactgttggatcatgagaggag 2975068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 16107910 - 16107852
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||    
T  16107910 accggctgcctcggtcatacccttcgtcgaaccggggctctgataccactgttgggtca 16107852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 29518715 - 29518666
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  29518715 acccttcgtcgaaccggggctctgataccactgttgggttatgagaggag 29518666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 2377966 - 2377926
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  2377966 acccttcgtcgaaccggggctctgataccactgttgggtca 2377926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 2578763 - 2578830
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    |||||||||||  | | ||||||| |||||||||||||||||||||||||||||  ||||||| ||||    
T  2578763 accggctgcctcggtcgtacccttcgtcgaaccggggctctgataccactgttgattcatgaggggag 2578830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 2579390 - 2579473
Alignment:
Q  156 taccgccgttgctggtttctccgcaagaa-accggctgccttagccataccctttgtcgaaccggggctctgataccactgttg 238  Q
    |||||||||||||| ||||| ||||||   |||||||||||  | | |||| || |||||||||||||||||||||||||||||    
T  2579390 taccgccgttgctgctttctgcgcaagtggaccggctgcctcggtcgtaccgttcgtcgaaccggggctctgataccactgttg 2579473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 2579055 - 2579105
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||    
T  2579055 tacccttcgtcgaaccgggactctgatatcactgttgggtcatgaggggag 2579105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 2579818 - 2579868
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||| ||||    
T  2579818 tacccttcgtggaaccggggctctgataccactgttgggtaatgaggggag 2579868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 16454788 - 16454738
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||| ||||    
T  16454788 tacccttcgtcgaacctgggctctgataccactgttgggtcacgaggggag 16454738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 2975538 - 2975390
Alignment:
Q  50 cccaaatgtgagtccatctattcaacatgctccctcttcaag---aagctcttagcttgcttgtattttcgt-gttggcttctctgcaatggaccggcac 145  Q
    ||||| ||||||| |||||||||| |||| |||| ||| |||   ||||||||| |||||| ||||  |||| || ||||||||||||| |||| |  ||    
T  2975538 cccaagtgtgagtgcatctattcatcatgttccccctttaagcggaagctctta-cttgctcgtatcgtcgttgtcggcttctctgcaacggactgatac 2975440  T
Q  146 aaggaacgtataccgccgttgctggtttctccgcaagaaaccggctgcct 195  Q
    ||||||| |||| || | ||| |||||||||||||| | ||| |||||||    
T  2975439 aaggaacttatatcgtcattgttggtttctccgcaacagaccagctgcct 2975390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 3409545 - 3409459
Alignment:
Q  156 taccgccgttgctggtttctccgcaagaaaccggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||||||||| ||| | |||||  | ||||||||||  | ||||  ||| ||||||||||||||||||||||||| ||||||||    
T  3409545 taccgccgttgctgctttttacgcaacga-ccggctgcctcggtcatatacttcgtcgaaccggggctctgataccactattgggtca 3409459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 2378112 - 2378071
Alignment:
Q  50 cccaaatgtgagtccatctattcaacatgctccctcttcaag 91  Q
    ||||||||||||||||| |||||| ||||||||| |||||||    
T  2378112 cccaaatgtgagtccatttattcatcatgctcccccttcaag 2378071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 35210416 - 35210375
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    ||||||| ||||||||| |||| |||||||||||||||||||    
T  35210416 tacccttcgtcgaaccgaggctttgataccactgttgggtca 35210375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 252
Target Start/End: Original strand, 66267 - 66467
Alignment:
Q  56 tgtgagtccatctattcaacatgctccctcttcaag---aagctcttagcttgcttgtattttcgt-gttggcttctctgcaatggaccggcacaaggaa 151  Q
    |||||||||||||||||| |||| |||| | |||||   ||||||||| |||||||||||   ||| | |||||||||  ||| |||| | ||||| ||     
T  66267 tgtgagtccatctattcatcatgttcccccatcaagcggaagctcttatcttgcttgtatcgccgttgctggcttctccacaagggactgacacaatgag 66366  T
Q  152 cgtataccgccgttgctggtttctccgcaagaaaccggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtcatgagagga 251  Q
    | ||||||||||||| ||||||||||||||   |||||||||||  | | ||||||| ||||||||||| |||||||| ||||||||||||||||| |||    
T  66367 cttataccgccgttgttggtttctccgcaacggaccggctgcctcggtcgtacccttcgtcgaaccgggactctgatatcactgttgggtcatgagggga 66466  T
Q  252 g 252  Q
    |    
T  66467 g 66467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 22077394 - 22077481
Alignment:
Q  156 taccgccgttgctggtttctccgcaagaaaccggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    ||||| ||||||||||||||||||||   |||||||||||| | | ||||||| |||||||| |||||||||| ||||||||||||||    
T  22077394 taccgtcgttgctggtttctccgcaacggaccggctgccttggtcgtacccttcgtcgaacctgggctctgatgccactgttgggtca 22077481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 22077734 - 22077815
Alignment:
Q  162 cgttgctggtttctccgcaagaaaccggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||| |||||||||||||||   |||||||||||| | ||||||||| |||||||| |||||||||| ||||||||||||||    
T  22077734 cgttactggtttctccgcaacggaccggctgccttggtcatacccttcgtcgaacctgggctctgatgccactgttgggtca 22077815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 50051971 - 50052019
Alignment:
Q  204 ccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  50051971 ccctttgtcgaaccggggctctgataccactgttgggtcacgaggggag 50052019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 34364720 - 34364679
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  34364720 tacccttcgtcgaaccggggctctgataccactgttgggtca 34364679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 44290769 - 44290809
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  44290769 acccttcgtcgaaccggggctctgataccactgttgggtca 44290809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 37850546 - 37850596
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||| ||||    
T  37850546 taccctttgtcgaaccggggctctgataccagagttggatcatgaggggag 37850596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 9956122 - 9956081
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  9956122 tacccttcgtcgaaccgaggctctgataccactgttgggtca 9956081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 31767107 - 31767151
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgag 247  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31767107 tacccttcgtcgaac-ggggctctgataccactgttgggtcatgag 31767151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 48588789 - 48588856
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||||||| || |  |||||| |||||||||||||||||||| || |||||| ||||||| ||||    
T  48588789 accggctgcctcagtcgcacccttcgtcgaaccggggctctgatatcattgttggatcatgaggggag 48588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 41157223 - 41157166
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||| ||||||| | | ||||||||||||||| ||||||||||||||| ||||||||||    
T  41157223 accgactgccttggtcgtaccctttgtcgaac-ggggctctgataccattgttgggtca 41157166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 47380046 - 47380152
Alignment:
Q  137 gaccggcacaaggaacgtataccgccgttgctggtttctccgcaagaaaccggctgccttagccataccctttgtcgaaccggggctctgataccactgt 236  Q
    ||||| |||||||| | | ||||||| ||||||||||||| ||||   ||||| ||||| || | ||| |||  || || |||||||||||||||| |||    
T  47380046 gaccgacacaaggagcttgtaccgccattgctggtttctctgcaactgaccggttgcctcagtcgtactcttcatcaaatcggggctctgataccattgt 47380145  T
Q  237 tgggtca 243  Q
    |||||||    
T  47380146 tgggtca 47380152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 18371895 - 18371988
Alignment:
Q  159 cgccgttgctggtttctccgcaaga-aaccggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||| |||||||||||||||||   ||||||||||||  | | |||||||||||||||| || |||||||||||||||||||||||||| ||||    
T  18371895 cgccgctgctggtttctccgcaaacgaaccggctgcctcggtcgtaccctttgtcgaaccagg-ctctgataccactgttgggtcatgaggggag 18371988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 147664 - 147621
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatg 245  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  147664 taccctttgtcgaaccggggctctgatatcactgttgggtcatg 147621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 1014144 - 1014225
Alignment:
Q  156 taccgccgttgctggtttctccgcaagaaaccggctgccttagccataccctttgtcgaaccggggctctgataccactgttg 238  Q
    |||||||||||| | ||||| |||||  | |||||||||| || | ||||||| |||||||||||||||||||||||||||||    
T  1014144 taccgccgttgcggctttctgcgcaacga-ccggctgcctcagtcgtacccttcgtcgaaccggggctctgataccactgttg 1014225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 3037896 - 3037953
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||||||| | | |||| |||||||||| ||||||||||||||||||||||||||    
T  3037896 accggctgccttggtcctaccttttgtcgaac-ggggctctgataccactgttgggtca 3037953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 3038217 - 3038274
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||||||| | | ||||||||||||||| | ||||||||||||||||||||||||    
T  3038217 accggctgccttggtcctaccctttgtcgaac-gaggctctgataccactgttgggtca 3038274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 9608966 - 9608932
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgt 236  Q
    ||||||||||||||||||||| |||||||||||||    
T  9608966 taccctttgtcgaaccggggcactgataccactgt 9608932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 18372229 - 18372278
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    |||||||||||||||| || ||||||||||||| |||||||||||| ||||    
T  18372229 taccctttgtcgaaccagg-ctctgataccactattgggtcatgaggggag 18372278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 34835104 - 34835047
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||||||  | | ||||||| ||||||||||| ||||||||||||||||||||||    
T  34835104 accggctgcctcggtcgtacccttcgtcgaaccggg-ctctgataccactgttgggtca 34835047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 1085544 - 1085611
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    |||||||||||  | |||||||||  ||||||||||||| ||||||||||||||||||||||| ||||    
T  1085544 accggctgcctcggtcatacccttcatcgaaccggggctatgataccactgttgggtcatgaggggag 1085611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 37533310 - 37533359
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  37533310 acccttcgtcgaaccggggctctgataccactgttgggtcacgaggggag 37533359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 37532957 - 37532997
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  37532957 acccttcgtcgaaccggggctctgataccactgttgggtca 37532997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Complemental strand, 37345783 - 37345753
Alignment:
Q  213 gaaccggggctctgataccactgttgggtca 243  Q
    |||||||||||||||||||||||||||||||    
T  37345783 gaaccggggctctgataccactgttgggtca 37345753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 45434467 - 45434426
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcat 244  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  45434467 taccctttgtcgaaccggg-ctccgataccactgttgggtcat 45434426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 30253777 - 30253733
Alignment:
Q  207 tttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||    
T  30253777 tttgtcgaac-ggggctctgataccattgttgggtcatgaggggag 30253733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 45754928 - 45754885
Alignment:
Q  200 cataccctttgtcgaaccggggctctgataccactgttgggtcat 244  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||    
T  45754928 catacccttcgccgaac-ggggctctgataccactgttgggtcat 45754885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 22304425 - 22304367
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||||||  | | ||||||| ||||||||||||||||||||||||||||||||||    
T  22304425 accggctgcctcggtcgtacccttcgtcgaaccggggctctgataccactgttgggtca 22304367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 15773067 - 15773017
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||| ||||    
T  15773067 tacccttcgtcgaatcagggctctgataccactgttgggtcatgaggggag 15773017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 37990878 - 37990966
Alignment:
Q  159 cgccgttgctggtttctccgcaaga-aaccggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtcatgag 247  Q
    ||||||||||||||||| |||||   ||||||||||||    | ||||||||||||||  ||||| ||||||||||||||||||||||||    
T  37990878 cgccgttgctggtttctgcgcaaacgaaccggctgcctcgatcgtaccctttgtcgaat-ggggccctgataccactgttgggtcatgag 37990966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 53577578 - 53577537
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  53577578 tacccttcgtcgaaccgggactctgataccactgttgggtca 53577537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 22303900 - 22303940
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  22303900 acccttcgtcgaaccggggctctgataccactgttaggtca 22303940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 3135048 - 3135097
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||||||||||| || |||||||||||||| |||||||||||| ||||    
T  3135048 taccctttgtcgaac-ggtgctctgataccactattgggtcatgaggggag 3135097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 3135400 - 3135444
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgag 247  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||    
T  3135400 taccctttgtcgaat-ggggctctgataccacagttgggtcatgag 3135444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 22304548 - 22304489
Alignment:
Q  56 tgtgagtccatctattcaacatgctccctcttcaa---gaagctcttagcttgcttgtat 112  Q
    |||||||||||||||||| ||||||||| ||||||   ||||||||||  ||||||||||    
T  22304548 tgtgagtccatctattcatcatgctcccccttcaagcggaagctcttactttgcttgtat 22304489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 53577697 - 53577656
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||  |||||||||| ||||||||||||||||||||||    
T  53577697 tacccttcttcgaaccgggactctgataccactgttgggtca 53577656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 49076776 - 49076820
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgag 247  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  49076776 taccctttgtcgaac-ggggctctgataccactgttgggtcatgag 49076820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 45496763 - 45496723
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  45496763 acccttcgtcgaaccggggctctgataccactgttgggtca 45496723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 44621212 - 44621162
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||| ||| |||| ||||||||||||||||||||| ||||||||||||    
T  44621212 tacccttcgtcaaaccagggctctgataccactgttggatcatgagaggag 44621162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 3341012 - 3340979
Alignment:
Q  210 gtcgaaccggggctctgataccactgttgggtca 243  Q
    ||||||||||||||||||||||||||||||||||    
T  3341012 gtcgaaccggggctctgataccactgttgggtca 3340979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 6876060 - 6876089
Alignment:
Q  218 ggggctctgataccactgttgggtcatgag 247  Q
    ||||||||||||||||||||||||||||||    
T  6876060 ggggctctgataccactgttgggtcatgag 6876089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 10246133 - 10246092
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||  ||||||||||| |||||||||||||||||||||    
T  10246133 tacccttcatcgaaccggggttctgataccactgttgggtca 10246092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 19895506 - 19895465
Alignment:
Q  204 ccctttgtcgaaccggggctctgataccactgttgggtcatg 245  Q
    ||||| |||||||||  |||||||||||||||||||||||||    
T  19895506 cccttcgtcgaaccgaagctctgataccactgttgggtcatg 19895465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 460 - 500
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  460 acccttcgtcgaaccggggctctgataccactgttgggtca 500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 314 - 355
Alignment:
Q  50 cccaaatgtgagtccatctattcaacatgctccctcttcaag 91  Q
    ||||||||||||||||| |||||| ||||||||| |||||||    
T  314 cccaaatgtgagtccatttattcatcatgctcccccttcaag 355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 29676756 - 29676700
Alignment:
Q  187 cggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||| |||| || ||||||||| || |||||||||||||||||||||||||||||||    
T  29676756 cggcggcctcagtcatacccttcgttgaaccggggctctgataccactgttgggtca 29676700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 37106136 - 37106096
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  37106136 acccttcgtcgaaccggggctctgataccactgttgggtca 37106096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 6421944 - 6421894
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||| ||||    
T  6421944 taccctttgtcgaaccgaggctctaataccaccgttgggtcatgaggggag 6421894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 14745620 - 14745652
Alignment:
Q  211 tcgaaccggggctctgataccactgttgggtca 243  Q
    |||||||||||||||||||||||||||||||||    
T  14745620 tcgaaccggggctctgataccactgttgggtca 14745652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 35580667 - 35580711
Alignment:
Q  200 cataccctttgtcgaaccggggctctgataccactgttgggtcat 244  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||    
T  35580667 catacccttcgtcgaaccggggctctgataccattattgggtcat 35580711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 36178552 - 36178592
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  36178552 acccttcgtcgaaccggggctctgataccactattgggtca 36178592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 6421597 - 6421548
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||| ||||    
T  6421597 taccctttgtcgaac-ggtgctctgataccactgttgggtcacgaggggag 6421548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 42514996 - 42514962
Alignment:
Q  52 caaatgtgagtccatctattcaacatgctccctct 86  Q
    |||||||||||||||||||||| ||||||||||||    
T  42514996 caaatgtgagtccatctattcatcatgctccctct 42514962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 35150303 - 35150175
Alignment:
Q  121 tggcttctctgcaatggaccggcacaaggaacgtataccgccgttgctggtttctccgcaagaaaccggctgcct----tagccataccctttgtcgaac 216  Q
    ||||||||| |||| |||||| ||||||||   ||||||| |||||||||||||||| ||| | |||||||||||    | | | ||||||| |||||||    
T  35150303 tggcttctccgcaaaggaccgacacaaggagtttataccgtcgttgctggtttctccacaacagaccggctgcctgccttggtcgtacccttcgtcgaac 35150204  T
Q  217 cggggctctgataccactgttgggtcatg 245  Q
     | | |||||||||||  |||||||||||    
T  35150203 tgcgactctgataccagagttgggtcatg 35150175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 38427474 - 38427391
Alignment:
Q  162 cgttgctggtttctccgcaagaa-accggctgccttagccataccctttgtcgaaccggggctctgataccactgttgggtcat 244  Q
    |||||||||||||| |||||  | || ||||| ||| | || |||||| |||||||||||||||| ||||||||||||| ||||    
T  38427474 cgttgctggtttctgcgcaaacagactggctgtcttggtcacacccttcgtcgaaccggggctctaataccactgttggatcat 38427391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 13415940 - 13415998
Alignment:
Q  56 tgtgagtccatctattcaacatgctccctcttcaa---gaagctcttagcttgcttgtat 112  Q
    |||||||||||||||||| ||||||||| ||||||   |||||||||| |||||||||||    
T  13415940 tgtgagtccatctattcagcatgctcccccttcaagcggaagctctta-cttgcttgtat 13415998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 26074441 - 26074400
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||    
T  26074441 taccctttgtcaaaccggggctctgatgccattgttgggtca 26074400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 1417 - 1465
Alignment:
Q  185 accggctgccttagccataccctttgtcgaaccggggctctgataccac 233  Q
    |||||||||||  | ||||||||| ||||||||||||||||||||||||    
T  1417 accggctgcctcggtcatacccttcgtcgaaccggggctctgataccac 1465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 1629 - 1678
Alignment:
Q  202 taccctttgtcgaaccggggctctgataccactgttgggtcatgagaggag 252  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||| ||||    
T  1629 taccctttgtcgaac-gaggctctgataccactgttgggtcacgaggggag 1678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 39666 - 39626
Alignment:
Q  203 accctttgtcgaaccggggctctgataccactgttgggtca 243  Q
    |||||| ||||||||  ||||||||||||||||||||||||    
T  39666 acccttcgtcgaacctcggctctgataccactgttgggtca 39626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University