View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_high_32 (Length: 249)
Name: NF11828_high_32
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 25960888 - 25961108
Alignment:
| Q |
16 |
aagtatattttcctaaaactaccattactcaactaatgggatgctttgttaattaatcactgcaatgcaggggggagactaccaatgacatggtacccaa |
115 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960888 |
aagtatattttcctaaaactactattaatcaactaatgggatgctttgttaattaatcactgcaatgcaggggggagactaccaatgacatggtacccaa |
25960987 |
T |
|
| Q |
116 |
aagatttcatcaaaataccaatgacagacatgagaatgagagctgatccatcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960988 |
aagatttcatcaaaataccaatgacagacatgagaatgagagctgatccatcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggt |
25961087 |
T |
|
| Q |
216 |
ctacgaattcggctatggtct |
236 |
Q |
| |
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||||||||||||||||||||| |
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| T |
25961088 |
ctacgaattcggctatggtct |
25961108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 25905550 - 25905321
Alignment:
| Q |
4 |
aataaattttttaagtatattttcctaaaactaccattactcaactaatgggatgctttgttaattaatcactgcaatgcaggggggagactaccaatga |
103 |
Q |
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||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25905550 |
aataacttttttaagtatatcttcctaaaactactattactcaactaatgggatgctttattaattaatcactgcaatgcaggggggagactaccaatga |
25905451 |
T |
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| Q |
104 |
catggtacccaaaagatttcatcaaaataccaatgacagacatgagaatgagagctgatccatcatcaggctatcccggtagaacctaccgtttctacac |
203 |
Q |
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| T |
25905450 |
catggtacccaaaagattttatcaaaataccaatgacagacatgagaatgagagctgatccatcatcaggctatcccggtagaacctaccgtttctacac |
25905351 |
T |
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| Q |
204 |
aggtccaaaggtctacgaattcggctatgg |
233 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25905350 |
aggtccaaaggtctacgaattcggctatgg |
25905321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 25884218 - 25883987
Alignment:
| Q |
2 |
caaataaattttttaagtatattttcctaaaactaccattactcaactaatgggatgctttgttaattaatcactgcaatgcaggggggagactaccaat |
101 |
Q |
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||||||| ||||| ||||||||||||||||||||| |||||| ||||||| |||| ||||||| || |||| ||||||||||| |||||||||||||| |
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| T |
25884218 |
caaataactttttctagtatattttcctaaaactactattacttaactaatttgatgttttgttattttatcattgcaatgcaggagggagactaccaat |
25884119 |
T |
|
| Q |
102 |
gacatggtacccaaaagatttcatcaaaataccaatgacagacatgagaatgagagctgatccatcatcaggctatcccggtagaacctaccgtttctac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884118 |
gacatggtacccaaaagatttcatcaaaataccaatgacagacatgagaatgagagctgatccatcatcaggctatcccggtagaacctaccgtttctac |
25884019 |
T |
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| Q |
202 |
acaggtccaaaggtctacgaattcggctatgg |
233 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25884018 |
acaggtccaaaggtctacgaattcggctatgg |
25883987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 25924374 - 25924161
Alignment:
| Q |
9 |
attttttaagtatattttcctaaaactaccattactcaactaatgggatgctttgttaattaatcactgcaatgcaggggggagactaccaatgacatgg |
108 |
Q |
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|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
25924374 |
atttttcaagtatagtttcctaaaactactattactcaactaatgggatgctttgttattta--------------ggggggagactaccaatgacatgg |
25924289 |
T |
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| Q |
109 |
tacccaaaagatttcatcaaaataccaatgacagacatgagaatgagagctgatccatcatcaggctatcccggtagaacctaccgtttctacacaggtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924288 |
tacccaaaagatttcatcaaaataccaatgacagacatgagaatgagagctgatccctcatcaggctatcccggtagaacctaccgtttctacacaggtc |
25924189 |
T |
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| Q |
209 |
caaaggtctacgaattcggctatggtct |
236 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
25924188 |
caaaggtctacgaattcggctatggtct |
25924161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 33420731 - 33420643
Alignment:
| Q |
76 |
tgcaatgcaggggggagactaccaatgacatggtacccaaaagatttcatcaaaataccaatgacagacatgagaatgagagctgatcc |
164 |
Q |
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||||||||||| || ||||||||||| || |||||||||||||||| ||| ||| | ||||||||||||||||| |||||||||||||| |
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| T |
33420731 |
tgcaatgcaggaggaagactaccaattacttggtacccaaaagattacattaaagttccaatgacagacatgaggatgagagctgatcc |
33420643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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