View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11828_high_36 (Length: 229)

Name: NF11828_high_36
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11828_high_36
NF11828_high_36
[»] chr5 (29 HSPs)
chr5 (1-129)||(25906099-25906227)
chr5 (126-219)||(25906252-25906345)
chr5 (126-217)||(25884625-25884716)
chr5 (27-120)||(20510463-20510556)
chr5 (6-113)||(22297764-22297872)
chr5 (6-113)||(22297908-22298016)
chr5 (27-124)||(29673282-29673378)
chr5 (21-120)||(2344626-2344725)
chr5 (1-111)||(17047859-17047970)
chr5 (6-116)||(13657695-13657806)
chr5 (8-119)||(6843078-6843190)
chr5 (21-114)||(25905959-25906052)
chr5 (63-115)||(2846573-2846625)
chr5 (63-114)||(2858411-2858462)
chr5 (32-115)||(38299117-38299200)
chr5 (38-119)||(5161081-5161161)
chr5 (27-120)||(13657544-13657637)
chr5 (27-116)||(17048023-17048111)
chr5 (31-112)||(29673710-29673791)
chr5 (27-116)||(38298693-38298782)
chr5 (32-92)||(20510360-20510420)
chr5 (66-116)||(33626007-33626057)
chr5 (35-116)||(3935964-3936045)
chr5 (62-114)||(2344507-2344559)
chr5 (6-116)||(24490693-24490803)
chr5 (65-118)||(2846957-2847009)
chr5 (65-118)||(2858794-2858846)
chr5 (172-217)||(25924812-25924857)
chr5 (31-91)||(15773739-15773799)
[»] chr8 (24 HSPs)
chr8 (6-115)||(9861568-9861678)
chr8 (1-115)||(31212313-31212428)
chr8 (6-121)||(15229610-15229726)
chr8 (6-119)||(33892032-33892146)
chr8 (6-122)||(10070005-10070122)
chr8 (21-117)||(31212446-31212542)
chr8 (6-117)||(33892182-33892294)
chr8 (6-122)||(8791853-8791970)
chr8 (21-117)||(6906262-6906357)
chr8 (10-114)||(27503640-27503745)
chr8 (7-90)||(14148833-14148916)
chr8 (31-113)||(6906445-6906527)
chr8 (8-117)||(37037252-37037360)
chr8 (1-92)||(8791733-8791825)
chr8 (8-118)||(29242429-29242539)
chr8 (31-120)||(39484728-39484816)
chr8 (6-118)||(14148393-14148505)
chr8 (6-121)||(5879869-5879984)
chr8 (63-112)||(5880067-5880116)
chr8 (31-116)||(29242844-29242928)
chr8 (6-81)||(36874344-36874420)
chr8 (21-115)||(10069851-10069945)
chr8 (64-115)||(27503426-27503477)
chr8 (31-112)||(1047259-1047340)
[»] chr7 (32 HSPs)
chr7 (6-118)||(19105401-19105513)
chr7 (6-115)||(37081241-37081349)
chr7 (6-119)||(6036544-6036658)
chr7 (21-114)||(9686447-9686540)
chr7 (21-115)||(29635235-29635328)
chr7 (31-116)||(7760607-7760692)
chr7 (6-115)||(12821179-12821288)
chr7 (21-120)||(3555360-3555458)
chr7 (31-118)||(7760769-7760856)
chr7 (8-112)||(31198302-31198406)
chr7 (1-120)||(21657292-21657412)
chr7 (8-113)||(20164989-20165095)
chr7 (27-113)||(23797212-23797298)
chr7 (6-117)||(19105254-19105365)
chr7 (27-119)||(35054441-35054533)
chr7 (22-113)||(29635666-29635757)
chr7 (6-120)||(31198444-31198558)
chr7 (1-124)||(9686283-9686408)
chr7 (20-113)||(21657460-21657553)
chr7 (27-116)||(35303853-35303942)
chr7 (1-89)||(31172202-31172290)
chr7 (60-119)||(15329853-15329912)
chr7 (27-90)||(31172343-31172406)
chr7 (36-117)||(23797062-23797141)
chr7 (6-100)||(8104649-8104744)
chr7 (9-115)||(8129879-8129985)
chr7 (67-121)||(15330055-15330109)
chr7 (77-115)||(37081156-37081194)
chr7 (38-120)||(47741036-47741118)
chr7 (6-70)||(8130024-8130089)
chr7 (39-117)||(18881110-18881190)
chr7 (35-92)||(35304226-35304283)
[»] chr6 (14 HSPs)
chr6 (6-120)||(34637570-34637685)
chr6 (1-132)||(31298865-31298997)
chr6 (6-120)||(13340589-13340704)
chr6 (21-113)||(13340445-13340537)
chr6 (22-114)||(24704308-24704400)
chr6 (8-114)||(7359568-7359674)
chr6 (27-115)||(34637425-34637512)
chr6 (35-119)||(6190565-6190648)
chr6 (32-116)||(12289979-12290063)
chr6 (21-124)||(30519672-30519774)
chr6 (27-117)||(31298722-31298812)
chr6 (46-92)||(24704769-24704815)
chr6 (65-121)||(12290175-12290230)
chr6 (28-88)||(14365097-14365157)
[»] chr1 (25 HSPs)
chr1 (6-115)||(30748951-30749061)
chr1 (6-115)||(30770402-30770512)
chr1 (6-110)||(13765561-13765666)
chr1 (22-117)||(16706498-16706596)
chr1 (6-117)||(14760020-14760131)
chr1 (1-117)||(16706333-16706450)
chr1 (6-123)||(15393301-15393418)
chr1 (7-116)||(32800271-32800381)
chr1 (21-118)||(22679488-22679585)
chr1 (21-118)||(30749102-30749199)
chr1 (21-118)||(30770553-30770650)
chr1 (33-115)||(15393145-15393227)
chr1 (31-117)||(22679335-22679421)
chr1 (23-124)||(20171380-20171480)
chr1 (40-113)||(23528229-23528302)
chr1 (6-115)||(30746773-30746882)
chr1 (6-115)||(30768224-30768333)
chr1 (75-116)||(51941889-51941930)
chr1 (6-90)||(35294358-35294443)
chr1 (9-115)||(23485670-23485777)
chr1 (30-90)||(8819021-8819080)
chr1 (44-112)||(23485857-23485925)
chr1 (62-118)||(30746964-30747019)
chr1 (62-118)||(30768415-30768470)
chr1 (65-113)||(51900116-51900164)
[»] chr4 (18 HSPs)
chr4 (21-114)||(13552824-13552917)
chr4 (6-122)||(54164459-54164576)
chr4 (6-117)||(33752681-33752791)
chr4 (6-117)||(54164612-54164724)
chr4 (21-115)||(28687623-28687716)
chr4 (31-91)||(17431132-17431192)
chr4 (8-115)||(32186616-32186722)
chr4 (6-116)||(7513526-7513637)
chr4 (29-116)||(34665148-34665235)
chr4 (1-124)||(13552660-13552785)
chr4 (6-90)||(33752327-33752410)
chr4 (38-91)||(17430737-17430790)
chr4 (27-92)||(34665003-34665068)
chr4 (45-124)||(16854813-16854892)
chr4 (6-91)||(17615621-17615706)
chr4 (21-113)||(32185283-32185373)
chr4 (34-72)||(31078970-31079008)
chr4 (64-113)||(53343707-53343756)
[»] chr2 (34 HSPs)
chr2 (1-112)||(981058-981169)
chr2 (8-120)||(32945607-32945719)
chr2 (39-117)||(16192593-16192671)
chr2 (6-113)||(12874826-12874934)
chr2 (6-113)||(16127920-16128028)
chr2 (6-119)||(4921309-4921423)
chr2 (22-117)||(18509495-18509590)
chr2 (45-115)||(25330560-25330630)
chr2 (27-116)||(37897574-37897663)
chr2 (8-91)||(26403030-26403114)
chr2 (6-121)||(30714117-30714231)
chr2 (27-120)||(7328466-7328558)
chr2 (27-116)||(12874679-12874768)
chr2 (27-112)||(27847860-27847945)
chr2 (35-120)||(39786311-39786396)
chr2 (6-113)||(16126222-16126330)
chr2 (6-113)||(16333295-16333403)
chr2 (6-121)||(43130289-43130404)
chr2 (30-105)||(4921179-4921254)
chr2 (34-85)||(8185251-8185302)
chr2 (6-111)||(16333154-16333259)
chr2 (1-90)||(980944-981032)
chr2 (22-115)||(20972385-20972478)
chr2 (6-90)||(35926870-35926955)
chr2 (35-112)||(39786493-39786569)
chr2 (10-116)||(32483645-32483752)
chr2 (1-117)||(32945752-32945868)
chr2 (6-92)||(35926747-35926834)
chr2 (6-111)||(16126366-16126471)
chr2 (38-92)||(18560519-18560573)
chr2 (31-116)||(39159267-39159350)
chr2 (34-114)||(37897727-37897807)
chr2 (5-113)||(40152701-40152809)
chr2 (6-90)||(7328357-7328443)
[»] chr3 (23 HSPs)
chr3 (5-114)||(30173597-30173707)
chr3 (6-121)||(45405047-45405162)
chr3 (2-119)||(4475245-4475363)
chr3 (36-117)||(30172069-30172150)
chr3 (22-114)||(30430271-30430363)
chr3 (6-113)||(2928096-2928204)
chr3 (8-116)||(32618934-32619043)
chr3 (6-120)||(4304138-4304253)
chr3 (27-94)||(34502623-34502690)
chr3 (6-112)||(4475108-4475214)
chr3 (6-117)||(6931086-6931198)
chr3 (39-121)||(27614008-27614090)
chr3 (45-116)||(4304333-4304404)
chr3 (27-90)||(41993144-41993207)
chr3 (27-83)||(10821862-10821918)
chr3 (66-116)||(19279899-19279949)
chr3 (31-116)||(28725683-28725770)
chr3 (39-117)||(43907899-43907976)
chr3 (35-133)||(8896043-8896145)
chr3 (6-92)||(44094174-44094262)
chr3 (31-90)||(44094314-44094373)
chr3 (35-76)||(29491409-29491450)
chr3 (64-112)||(30430672-30430720)
[»] scaffold0025 (2 HSPs)
scaffold0025 (6-116)||(63971-64082)
scaffold0025 (21-116)||(63826-63919)
[»] scaffold0009 (1 HSPs)
scaffold0009 (36-129)||(26987-27080)
[»] scaffold0328 (1 HSPs)
scaffold0328 (6-116)||(11009-11119)
[»] scaffold0577 (1 HSPs)
scaffold0577 (6-87)||(1636-1717)
[»] scaffold0129 (1 HSPs)
scaffold0129 (32-114)||(6273-6354)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 25906099 - 25906227
Alignment:
Q  1 cagatactaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactat 100  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  25906099 cagagactaatttcataaatgaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggaggattat 25906198  T
Q  101 ttacttatttaaccctaaaataaacaata 129  Q
    |||||||||||||||||||||||||||||    
T  25906199 ttacttatttaaccctaaaataaacaata 25906227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 25906252 - 25906345
Alignment:
Q  126 aatattctctcatttaatggttaagactttccagaatctatgaagtttatacatgttttaaggatcttggtcatgcacagccacaactacatga 219  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25906252 aatattctctcatttaatggttaagactttccggaatctatgaagtttatacatgttttaaggatcttggtcatgcgcagccacaactacatga 25906345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 25884625 - 25884716
Alignment:
Q  126 aatattctctcatttaatggttaagactttccagaatctatgaagtttatacatgttttaaggatcttggtcatgcacagccacaactacat 217  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25884625 aatattctctcatttaataattaagacttttcagaatctatgaagtttatacatgttttaaggatcttggtcatgcgcagccacaactacat 25884716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 20510463 - 20510556
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    |||||||||| |||||||||||| ||||||| |  ||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||    
T  20510463 tttagagggatcaaaagcctaaaaaatattttaatgggactaaaatcaaatgtttatatatttatgaggactatttacttttttaaccctaaaa 20510556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 22297872 - 22297764
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || | |||||| | ||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||||  | |||||||||    
T  22297872 actaatttcatagatgagaaattttaaagggaccaaaaacctaaaaaatattttagagggactaaaatcaaatgttgatatatttagagggactatttac 22297773  T
Q  105 ttatttaac 113  Q
    |||||||||    
T  22297772 ttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 22297908 - 22298016
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| ||||||||||||| | |||| ||||||| | ||||||||||||||||||||  |||||||||| | || ||||||    
T  22297908 actaatttcataaatgaaaaattttagagggaccaaaaacttaaaaaatattttaaggggactaaaatcaaatgttagtatatttagggggaccatttac 22298007  T
Q  105 ttatttaac 113  Q
    |||||||||    
T  22298008 ttatttaac 22298016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 29673378 - 29673282
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaataaa 124  Q
    |||||||||| ||||| |||||| ||||||| ||| ||||||||||||||||||| |||||||| | | || |||||||||||||||||| |||||||    
T  29673378 tttagagggaacaaaatcctaaa-aatattttaggaggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaacccttaaataaa 29673282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 2344626 - 2344725
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    ||||| |||| |||||||||||| |||| |||||| | || || |||||||| |||||||| | |||||||||| |||||||||||||||||||| ||||    
T  2344626 aaaaattttaaagggaccaaaagactaaggaatatgttagaggaactaaaataaaatgttggtctatttaggaggactatttacttatttaacccaaaaa 2344725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 17047970 - 17047859
Alignment:
Q  1 cagatactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag-gagaact 98  Q
    |||| ||||| ||||||||| |||||||| ||||||||||||||  |||||||||||| ||| || |||||||||||| ||| ||||||||| ||| |||    
T  17047970 cagagactaacttcataaatgaaaaattttagagggaccaaaagtttaaagaatattttaggagggctaaaatcaaatattggtatatttagagag-act 17047872  T
Q  99 atttacttattta 111  Q
    |||||| ||||||    
T  17047871 atttacatattta 17047859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 13657695 - 13657806
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || |||| ||| ||||||| |||||||| ||| ||||||| |||   ||||||||||||||||  |||||||  ||| |||||||||    
T  13657695 actaatttcatacatgaaaatttttagagggaacaaaagccaaaataatattttaggaaaactaaaatcaaatgttagtatatttcagaggactatttac 13657794  T
Q  105 ttatttaaccct 116  Q
    ||||||||||||    
T  13657795 ttatttaaccct 13657806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 6843190 - 6843078
Alignment:
Q  8 taatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattt-aggagaactatttact 105  Q
    |||||||||| || |||||||| |||||||||||||  |||| |||||||  ||| ||||||||||||||||||  ||||||| | ||| |||||||| |    
T  6843190 taatttcatagatgaaaaattttagagggaccaaaaatctaaggaatattctaggaggactaaaatcaaatgtttgtatatttaaagag-actatttatt 6843092  T
Q  106 tatttaaccctaaa 119  Q
    ||||||||||||||    
T  6843091 tatttaaccctaaa 6843078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 25906052 - 25905959
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacc 114  Q
    ||||| |||||||||||||||||||||   |||| || ||||||||||||||||||||||| ||||| || | | |  ||||||||||||||||    
T  25906052 aaaaattttagagggaccaaaagcctatgaaatactttagggggactaaaatcaaatgttggtatatataaggggatcatttacttatttaacc 25905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 2846625 - 2846573
Alignment:
Q  63 ggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccc 115  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  2846625 ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 2846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 2858462 - 2858411
Alignment:
Q  63 ggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacc 114  Q
    |||||||||||||||||||||||||||||| | || ||||||||||||||||    
T  2858462 ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 38299117 - 38299200
Alignment:
Q  32 agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccc 115  Q
    ||||||||||||||||||||| |||| || || ||||||||| ||| ||| |||||||| |  || ||||||||||||||||||    
T  38299117 agggaccaaaagcctaaagaaaattttagaggaactaaaatcgaatattggtatatttaaggaaaatatttacttatttaaccc 38299200  T

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Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 5161081 - 5161161
Alignment:
Q  38 caaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaa 119  Q
    ||||| |||||| ||||||| ||||| | |||||||||||||| ||||||||| || ||  |||||||||||||||||||||    
T  5161081 caaaaacctaaataatattttagggg-agtaaaatcaaatgttaatatatttaagaaaatcatttacttatttaaccctaaa 5161161  T

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Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 13657637 - 13657544
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    ||||||| ||||||||| ||||||||||||| || || ||||||||||||||||  ||||||||   | || ||||| |||||||| |||||||    
T  13657637 tttagagagaccaaaagtctaaagaatattttagaggaactaaaatcaaatgtttgtatatttaaagggaccatttatttatttaatcctaaaa 13657544  T

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Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 17048023 - 17048111
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||| |||||||||||||| ||| ||| ||||||||| ||||||||||||| |||||||| | | |  ||| ||||||||||||||    
T  17048023 tttagaggaaccaaaagcctaaaaaatcttttagggggact-aaatcaaatgttggtatatttaaggggatcattcacttatttaaccct 17048111  T

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Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 29673710 - 29673791
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaa 112  Q
    |||||||||||| | |||  ||||||| || || ||||||||||||||||  |||||||||| |||| ||||||||||||||    
T  29673710 gagggaccaaaaccttaagaaatattttagaggaactaaaatcaaatgtttgtatatttaggggaaccatttacttatttaa 29673791  T

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Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 38298782 - 38298693
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    ||||||| ||| |||| |||||||||||||| || |||||| ||||||||| |||||||||||||    |  ||||||||||||||||||    
T  38298782 tttagagagacaaaaaacctaaagaatattttagagggacttaaatcaaatattgatatatttagactgatcatttacttatttaaccct 38298693  T

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Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 20510420 - 20510360
Alignment:
Q  32 agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttagg 92  Q
    |||||| |||| ||||||||||||||   |||||||||||||||||||| |||||||||||    
T  20510420 agggactaaaaacctaaagaatatttttaggggactaaaatcaaatgttaatatatttagg 20510360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 33626007 - 33626057
Alignment:
Q  66 ctaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||||||| |||||||||||||||| |  ||||||||||||||||||    
T  33626007 ctaaaatcaaatattgatatatttaggaggatcatttacttatttaaccct 33626057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 3936045 - 3935964
Alignment:
Q  35 gaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||| | |||| ||||||| || |||| | ||||||||| ||| |||||||||  |||| ||||||||||||||||||    
T  3936045 gaccaaaaacgtaaaaaatattttagagggattgaaatcaaatattgttatatttagatgaaccatttacttatttaaccct 3935964  T

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Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 2344559 - 2344507
Alignment:
Q  62 gggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacc 114  Q
    ||||||||||||||||| ||||||||| ||| | ||| |||||||||||||||    
T  2344559 gggactaaaatcaaatgatgatatattaagggggactgtttacttatttaacc 2344507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 24490803 - 24490693
Alignment:
Q  6 actaatttcataaataaaaaatttag-agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || | |||||| | ||||||||||| | |||   |||||| || | |||||||||||||||||| |||| |||| || || ||||||    
T  24490803 actaatttcatagatgagaaattttggagggaccaaaaacttaagagatattttagagagactaaaatcaaatgttggtata-ttagaaggaccatttac 24490705  T
Q  105 ttatttaaccct 116  Q
    ||||||||||||    
T  24490704 ttatttaaccct 24490693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 2846957 - 2847009
Alignment:
Q  65 actaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaa 118  Q
    ||||||||||||||||| | ||| ||||||| | ||||||||||||||||||||    
T  2846957 actaaaatcaaatgttggtttatataggagacc-atttacttatttaaccctaa 2847009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 2858794 - 2858846
Alignment:
Q  65 actaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaa 118  Q
    ||||||||||||||||| | ||| ||||||| | ||||||||||||||||||||    
T  2858794 actaaaatcaaatgttggtttatataggagacc-atttacttatttaaccctaa 2858846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 25924812 - 25924857
Alignment:
Q  172 ttatacatgttttaaggatcttggtcatgcacagccacaactacat 217  Q
    |||||||||||||||||||||||||| ||| ||||  |||||||||    
T  25924812 ttatacatgttttaaggatcttggtcgtgcgcagctgcaactacat 25924857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 15773739 - 15773799
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag 91  Q
    |||||||||||||||||| | |||||| |||  |||||||||||| ||||  |||||||||    
T  15773739 gagggaccaaaagcctaagggatattttaggaagactaaaatcaattgttagtatatttag 15773799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 9861678 - 9861568
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||| |||||||||    
T  9861678 actaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttatagggactaaaatcaaatgttgatatatttaggaggactatttac 9861579  T
Q  105 ttatttaaccc 115  Q
    |||||||||||    
T  9861578 ttatttaaccc 9861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 31212428 - 31212313
Alignment:
Q  1 cagatactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaacta 99  Q
    |||| |||||||||||||||| ||  ||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | | ||||    
T  31212428 cagagactaatttcataaatagaattttttagagggaccaaaagcctaaagaatattttatggggactaaaatcaaatgttgatatatttaaggggacta 31212329  T
Q  100 tttacttatttaaccc 115  Q
    ||||||||||||||||    
T  31212328 tttacttatttaaccc 31212313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 15229726 - 15229610
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||||||||||||||| ||||||| |||||| | ||||||||||| |  ||||||||||| |||||||| |||||||| | |||||||||||    
T  15229726 actaatttcataaataaaaaattttagagggatcaaaagtcaaaagaatattttatagggactaaaataaaatgttggtatatttaagggaactatttac 15229627  T
Q  105 ttatttaaccctaaaat 121  Q
    |||||||||||||||||    
T  15229626 ttatttaaccctaaaat 15229610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 33892146 - 33892032
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || |||| ||| ||| ||||||||| ||||||||||||||   ||||||||||||||||||||| |||||||| |||||||||||||    
T  33892146 actaatttcatagatgaaaatttttagaaggaccaaaaacctaaagaatattttgaggggactaaaatcaaatgttggtatatttaagagaactatttac 33892047  T
Q  105 ttatttaaccctaaa 119  Q
    |||||||||||||||    
T  33892046 ttatttaaccctaaa 33892032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 10070005 - 10070122
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || |||||||| ||||||||||||| |||||| ||||||| ||| ||| |||||| |||| ||| |||||||||| ||||||||| |    
T  10070005 actaatttcatagatgaaaaattttagagggaccaaaaacctaaaaaatattttaggaggattaaaataaaatattggtatatttaggggaactatttgc 10070104  T
Q  105 ttatttaaccctaaaata 122  Q
    ||||||||||||||||||    
T  10070105 ttatttaaccctaaaata 10070122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 31212446 - 31212542
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta 117  Q
    ||||| |||||||| | ||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||    
T  31212446 aaaaattttagaggaaacaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagactatttacttatttaacccta 31212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 33892182 - 33892294
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |  |||||||||||||||||||| |||||||| ||  | | |||||    
T  33892182 actaatttcataaatgaaaaattttagagggaccaaaaacataaagaatattttaaagggactaaaatcaaatgttggtatatttaagaagattgtttac 33892281  T
Q  105 ttatttaacccta 117  Q
    |||||||||||||    
T  33892282 ttatttaacccta 33892294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 8791853 - 8791970
Alignment:
Q  6 actaatttcataaataaaaaatt-tagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| |||||||| | ||||||||  |||| |||||  ||||||| | | ||| ||||||||||||||  |||||||| |||||||||||||    
T  8791853 actaatttcatagataaaaaaatgtagagggataaaaaacctaagaaatattttatgaggattaaaatcaaatgttagtatatttaagagaactatttac 8791952  T
Q  105 ttatttaaccctaaaata 122  Q
    ||||||||||||||||||    
T  8791953 ttatttaaccctaaaata 8791970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 6906357 - 6906262
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta 117  Q
    ||||| ||| || ||||||||||||||| |||||||| | |||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||    
T  6906357 aaaaattttggaaggaccaaaagcctaaggaatattttatggggactaaa-tcaaatgttggtatatttagggggactatttacttatttaacccta 6906262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 27503640 - 27503745
Alignment:
Q  10 atttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttat 108  Q
    ||||||| ||| |||||||| |||||||||||||||||||| ||||||| | ||  ||||||||||||| |||||||||||| | |||  ||||||||||    
T  27503640 atttcatgaatgaaaaatttcagagggaccaaaagcctaaataatattttatggaaactaaaatcaaatattgatatatttaagtgaatcatttacttat 27503739  T
Q  109 ttaacc 114  Q
    ||||||    
T  27503740 ttaacc 27503745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 14148833 - 14148916
Alignment:
Q  7 ctaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    ||||||||||| || |||||||| |  |||||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||    
T  14148833 ctaatttcatatatgaaaaattttggaggaccaaaagcctaaaaaatatgttagggggactaaaatcaaatgttggtatattta 14148916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 6906445 - 6906527
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    |||||| |||||||||||| ||||||| | ||||||||||||||||||||| |||||||||| | ||  ||||||||||||||    
T  6906445 gagggatcaaaagcctaaaaaatattttatggggactaaaatcaaatgttggtatatttagggggaccgtttacttatttaac 6906527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 37037252 - 37037360
Alignment:
Q  8 taatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactta 107  Q
    |||||||||  || ||||||||  ||||||||||||  ||| |||||||| || ||||||||||||||||||||  |||||||| || || |||||||||    
T  37037252 taatttcatggatgaaaaattttaagggaccaaaagtataaggaatattttagagggactaaaatcaaatgttggaatatttagaag-accatttactta 37037350  T
Q  108 tttaacccta 117  Q
    ||||||||||    
T  37037351 tttaacccta 37037360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 8791825 - 8791733
Alignment:
Q  1 cagatactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttagg 92  Q
    |||| |||||||||||| || |||||||| ||||||||||||| |||||  |||||||  ||| || ||||||||||||||||||||||||||    
T  8791825 cagagactaatttcatagatgaaaaattttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 8791733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 29242539 - 29242429
Alignment:
Q  8 taatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactt 106  Q
    |||||||||| ||||||| ||| ||||| ||||||||||||| |||||||| || ||||||||||| |||||||| ||| |||||  | || | ||||||    
T  29242539 taatttcatagataaaaacttttagaggaaccaaaagcctaatgaatattttagagggactaaaataaaatgttggtat-tttagagggacaagttactt 29242441  T
Q  107 atttaaccctaa 118  Q
    ||||||||||||    
T  29242440 atttaaccctaa 29242429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 39484728 - 39484816
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    |||||||||||| |||||  ||||||| |||| || |||||  ||||||||||||||||||| |||| |||||||||||||||| |||||    
T  39484728 gagggaccaaaatcctaagaaatattttagggagattaaaaa-aaatgttgatatatttaggggaaccatttacttatttaaccttaaaa 39484816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 14148505 - 14148393
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||||||| || |||| |||   || || |||| |||||  ||||||| ||| |||||||||||||||||||||||||||||| | || | |||||    
T  14148505 actaatttcatagatgaaaatttttagggaactaaaaacctaagaaatattttaggaggactaaaatcaaatgttgatatatttagggggaccacttact 14148406  T
Q  106 tatttaaccctaa 118  Q
    |||| ||||||||    
T  14148405 tattaaaccctaa 14148393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 5879984 - 5879869
Alignment:
Q  6 actaatttcataaataaaaaat-ttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||  || |||||| |||||||||||||| || |||  ||||||| ||   |||||||||||||| ||  ||||||||||   |||||||||    
T  5879984 actaatttcatggatgaaaaatgttagagggaccaaa-gcttaagaaatattttagaaagactaaaatcaaatattagtatatttagggagactatttac 5879886  T
Q  105 ttatttaaccctaaaat 121  Q
    |||||||||||||||||    
T  5879885 ttatttaaccctaaaat 5879869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 5880067 - 5880116
Alignment:
Q  63 ggactaaaatcaaatgttgatatatttaggagaactatttacttatttaa 112  Q
    |||| |||||||||||||| | ||||||||||||| ||||||||||||||    
T  5880067 ggacaaaaatcaaatgttggtttatttaggagaacaatttacttatttaa 5880116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 29242844 - 29242928
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||| ||| |||||  ||| ||| || |||||||||||||||||||||||  |||||| | || ||||||||||||||||||    
T  29242844 gagggaccgaaaacctaagaaattttttagagggactaaaatcaaatgttgataattttagg-ggacaatttacttatttaaccct 29242928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 36874420 - 36874344
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttg 81  Q
    ||||||||||||||||| |  ||| ||||||||||||| ||||| |||||||| || || |||||||| ||||||||    
T  36874420 actaatttcataaataacattttttagagggaccaaaaacctaaggaatattttagaggaactaaaattaaatgttg 36874344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 10069945 - 10069851
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag-gagaactatttacttatttaaccc 115  Q
    ||||| |||||| ||||||||| |||||||||||||| || |||  |||||| |||||||| || |||||| | |||| |||||||||| ||||||    
T  10069945 aaaaattttagaaggaccaaaatcctaaagaatattttagaggggttaaaattaaatgttggtacatttagtgggaac-atttacttatgtaaccc 10069851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 27503477 - 27503426
Alignment:
Q  64 gactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccc 115  Q
    |||||||| |||||||||||||||||||||| |  | |||||||||||||||    
T  27503477 gactaaaagcaaatgttgatatatttaggaggatcacttacttatttaaccc 27503426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 1047340 - 1047259
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaa 112  Q
    ||||||||||||| |||| |||| ||| ||| ||| |||||| |||| ||  |||||||||||  || ||||||||||||||    
T  1047340 gagggaccaaaagtctaaggaatgttttaggaggattaaaataaaatattagtatatttaggaagaccatttacttatttaa 1047259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 19105401 - 19105513
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||| || | |||||||||||||||| |||| |||||||||| | ||||||||||    
T  19105401 actaatttcataaatgaaaattttagagggaccaaaagcctaaagaatagtttaaggggactaaaatcaaaagttggtatatttagggggactatttact 19105500  T
Q  106 tatttaaccctaa 118  Q
    |||||||||||||    
T  19105501 tatttaaccctaa 19105513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 37081241 - 37081349
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| ||||||||  ||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  37081241 actaatttcataaatgaaaattttagagggaccaaaaacctaaggaatatttttgggggactaaaatcaaacgttgatatatttaggggaa-tatttact 37081339  T
Q  106 tatttaaccc 115  Q
    ||||||||||    
T  37081340 tatttaaccc 37081349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 6036658 - 6036544
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| |||| | |||||| |||||| | ||||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  6036658 actaatttcataaatgaaaaattttagagaggccaaaaacctaaaaactattttaaggggactaaaatcaaatgttgatatatttaggggaactatttac 6036559  T
Q  105 ttatttaaccctaaa 119  Q
    ||||||||| |||||    
T  6036558 ttatttaactctaaa 6036544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 9686447 - 9686540
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacc 114  Q
    ||||| |||||| |||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  9686447 aaaaattttagaaggaccaaaagcctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaacc 9686540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 29635328 - 29635235
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccc 115  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||| | || |||||||||||||||||    
T  29635328 aaaaattttagagggaccaaaagtctaaggaatattttagggg-actaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 29635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 7760692 - 7760607
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||| || | |||||||||||||||||||    
T  7760692 gagggaccaaaagcctaaagaatattttagggggactaaaatcatatgctggtatatttagaaggattatttacttatttaaccct 7760607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 12821288 - 12821179
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||||||| || |||| |||||||| |||||||||||||| ||||||| ||||||| |||||||||| |||| |||||||| | | || |||||||    
T  12821288 actaatttcatagatgaaaattttagaggaaccaaaagcctaaaaaatattttagggggattaaaatcaaacgttggtatatttaaggggaccatttact 12821189  T
Q  106 tatttaaccc 115  Q
    ||||||||||    
T  12821188 tatttaaccc 12821179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 3555458 - 3555360
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    ||||||||| |||||||||||| |||||  ||||||| ||||||||||||||||||||||| |||||||||| | || |||| |||||||||||||||||    
T  3555458 aaaaaatttggagggaccaaaa-cctaagaaatattttagggggactaaaatcaaatgttggtatatttagggggaccatttgcttatttaaccctaaaa 3555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 7760769 - 7760856
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaa 118  Q
    ||||||||||||||||||  ||||||| |  |||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  7760769 gagggaccaaaagcctaagaaatattttatagggactaaaatcaaatgttggtatatttaggggaactatttacttatttaatcctaa 7760856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 31198406 - 31198302
Alignment:
Q  8 taatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactt 106  Q
    ||||||||||||| |||||||| ||||||| ||| | |||||| ||||||| ||  ||||||||||||||||||| |||||||||| |||||||||||||    
T  31198406 taatttcataaatgaaaaattttagagggatcaataacctaaaaaatattttagaaggactaaaatcaaatgttggtatatttagg-gaactatttactt 31198308  T
Q  107 atttaa 112  Q
    ||||||    
T  31198307 atttaa 31198302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 21657412 - 21657292
Alignment:
Q  1 cagatactaatttcataaataaaaaattta-gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaacta 99  Q
    |||| ||||||||||||||| |||| |||  || | |||||||| ||||||||||||| | |||  ||||| | ||||||||||||||||||||| || |    
T  21657412 cagagactaatttcataaatgaaaattttttgaagaaccaaaagtctaaagaatattttaagggagctaaagttaaatgttgatatatttaggaggacca 21657313  T
Q  100 tttacttatttaaccctaaaa 120  Q
    |||||||||||||||||||||    
T  21657312 tttacttatttaaccctaaaa 21657292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 20164989 - 20165095
Alignment:
Q  8 taatttcataaataaaaaatt-tagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactt 106  Q
    |||||||||| ||| |||||| |||||||| ||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||  || |||| |||    
T  20164989 taatttcatagatagaaaattgtagagggatcaaaaacctaatgaatattttagagggactaaaatcaaatgttggtatatttaggaagaccatttcctt 20165088  T
Q  107 atttaac 113  Q
    |||||||    
T  20165089 atttaac 20165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 23797212 - 23797298
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    ||||||||||||||||  ||||  ||||||| || |||||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  23797212 tttagagggaccaaaaatctaagaaatattttagagggactaaaatcaaatgttgatatatttagggaaactatttacatatttaac 23797298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 19105365 - 19105254
Alignment:
Q  6 actaatttcataaataaaaaatt-tagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||||||  |||||||| | | |   |||||    
T  19105365 actaatttcataaatgaaaaattatagagggaccaaaagcctaaagaatatttta-gaggactaaaatcgaatgttagtatatttatgcggatcttttac 19105267  T
Q  105 ttatttaacccta 117  Q
    |||||||||||||    
T  19105266 ttatttaacccta 19105254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 35054533 - 35054441
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaa 119  Q
    |||||||| |||||||| ||||||||||||| |  ||||  ||||| |||||||  ||||||||| |||||||||||||||||||||||||||    
T  35054533 tttagaggaaccaaaagtctaaagaatattttaaagggatcaaaattaaatgttagtatatttagaagaactatttacttatttaaccctaaa 35054441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 29635666 - 29635757
Alignment:
Q  22 aaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    |||| ||| |||||||||||| | |||| ||||||| ||| | ||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  29635666 aaaactttggagggaccaaaatcttaaaaaatattttaggagaactaaaatcaaatgttgatatatttaggacaaccatttacatatttaac 29635757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 31198444 - 31198558
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || |||||||| |||||| ||||||||||||  ||||||| ||| | ||||||||||||||||| ||||||||   | |||||||||    
T  31198444 actaatttcatagatgaaaaattttagaggg-ccaaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatatttaaagggactatttac 31198542  T
Q  105 ttatttaaccctaaaa 120  Q
    ||||||||||| ||||    
T  31198543 ttatttaacccaaaaa 31198558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 9686408 - 9686283
Alignment:
Q  1 cagatactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaa-tcaaatgttgatatatttaggagaact 98  Q
    |||| ||||||||||||||| |||||||| |||  |||||||||| |||| |||||||   ||||||||||| |||||| ||  ||||||||||   | |    
T  9686408 cagagactaatttcataaatgaaaaattttagaacgaccaaaagcttaaaaaatattttttggggactaaaaatcaaatattagtatatttagggagatt 9686309  T
Q  99 atttacttatttaaccctaaaataaa 124  Q
    ||||||||||||||||| ||||||||    
T  9686308 atttacttatttaacccaaaaataaa 9686283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 21657460 - 21657553
Alignment:
Q  20 taaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    |||||| |||||||||| ||||||| ||| |||||||| | |||| |||| ||||||||||  ||||||||||   ||||||||||||||||||    
T  21657460 taaaaattttagagggatcaaaagcgtaaggaatattttaagggggctaatatcaaatgttagtatatttagggagactatttacttatttaac 21657553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 35303942 - 35303853
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||||||||||| ||| || ||||||||||||| |||||||| |||| ||||||||||| || | || || || ||||||||||||    
T  35303942 tttagagggaccaaaaacctcaaaaatatttaaggggaactaaaattaaatattgatatatttcgggggaccatgtaattatttaaccct 35303853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31172290 - 31172202
Alignment:
Q  1 cagatactaatttcataaataaaaaa-tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattt 89  Q
    |||| ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| |  || | |||||||||||||||||||||||    
T  31172290 cagagactaatttcataaatgaaaaactttagagggatcaaaagtctaaaaaatattttatagg-agtaaaatcaaatgttgatatattt 31172202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 15329912 - 15329853
Alignment:
Q  60 gggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaa 119  Q
    |||||||||||||||||||||| |||||||| | | ||||||| | ||||||||||||||    
T  15329912 gggggactaaaatcaaatgttggtatatttaaggggactatttccatatttaaccctaaa 15329853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 31172343 - 31172406
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    |||||||||||||||| |||||| ||||||| ||| ||| ||||||||||||||  ||||||||    
T  31172343 tttagagggaccaaaaacctaaaaaatattttaggaggattaaaatcaaatgtttgtatattta 31172406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 23797141 - 23797062
Alignment:
Q  36 accaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta 117  Q
    ||||||| |||||| ||| ||| | ||||||||||||||||| || || |||||||  |||| |||||||||||||||||||    
T  23797141 accaaaaacctaaataatgttttaaggggactaaaatcaaatttttatgtatttag--gaaccatttacttatttaacccta 23797062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 8104744 - 8104649
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactat 100  Q
    |||||||| ||||||  ||||||| ||||  || ||||||||||| ||||||  |  |||||| |||||||||||||||||||||||  |||||||    
T  8104744 actaattttataaatgtaaaattttagagatactaaaagcctaaaaaatattgtaaagggactgaaatcaaatgttgatatatttagaggaactat 8104649  T

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Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 8129985 - 8129879
Alignment:
Q  9 aatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactta 107  Q
    |||||||||||| ||| |||| ||||| |||||||| | ||  ||||||| |   ||| ||||||||||||||| || |||||||||| | |||||||||    
T  8129985 aatttcataaatgaaagattttagaggaaccaaaagtcaaagaaatattttaaaaggattaaaatcaaatgttggtagatttaggagatc-atttactta 8129887  T
Q  108 tttaaccc 115  Q
    ||||||||    
T  8129886 tttaaccc 8129879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 15330055 - 15330109
Alignment:
Q  67 taaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaat 121  Q
    |||||| |||||| |||||||||||||| || || |||||||||||||| |||||    
T  15330055 taaaattaaatgtggatatatttaggaggaccatatacttatttaacccaaaaat 15330109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 37081194 - 37081156
Alignment:
Q  77 tgttgatatatttaggagaactatttacttatttaaccc 115  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  37081194 tgttgatatatttagggaaactatttacttatttaaccc 37081156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 47741036 - 47741118
Alignment:
Q  38 caaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    |||||||||||  |||||||  |||||||| |||| |||||||| |||||||| | | || ||||||||| |||||| |||||    
T  47741036 caaaagcctaagaaatatttttgggggactgaaattaaatgttggtatatttatggggaccatttacttaattaaccttaaaa 47741118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 8130024 - 8130089
Alignment:
Q  6 actaatttcataaataaaaaa-tttagagggaccaaaagcctaaagaatatttaagggggactaaa 70  Q
    ||||||||||||||||||||| ||||||| ||||||| || |||  ||||||| | ||||||||||    
T  8130024 actaatttcataaataaaaaattttagagagaccaaatgcataacaaatattttatggggactaaa 8130089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 18881190 - 18881110
Alignment:
Q  39 aaaagcctaaagaatatttaagggggactaaaatcaaatgttg--atatatttaggagaactatttacttatttaacccta 117  Q
    |||| |||||||||||||| |  || |||||||||||||||||  ||||||||| | | |||||| |||||||| ||||||    
T  18881190 aaaaacctaaagaatattttaaaggaactaaaatcaaatgttggtatatatttatggggactattcacttattttacccta 18881110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 35304226 - 35304283
Alignment:
Q  35 gaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttagg 92  Q
    ||||||||| ||||  ||||||| ||| ||||||||||||| ||||| ||||||||||    
T  35304226 gaccaaaagactaactaatattttaggcggactaaaatcaattgttggtatatttagg 35304283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 34637570 - 34637685
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||| ||||| |||||||| ||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||   |||||||||    
T  34637570 actaatttcttaaatgaaaaattttagagggaccaaaaacctcaagaatattttaggggaactaaaatcaaatgttgatatatttagggtgactatttac 34637669  T
Q  105 ttatttaaccctaaaa 120  Q
    ||||||||||||||||    
T  34637670 ttatttaaccctaaaa 34637685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31298865 - 31298997
Alignment:
Q  1 cagatactaatttcataaat-aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaacta 99  Q
    |||| ||||||||| || || |||||||||||||||| |||||||||||||||||||| || || ||||||||||||| ||| ||||||||   | ||||    
T  31298865 cagagactaatttcgtagatgaaaaaatttagagggagcaaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggacta 31298964  T
Q  100 tttacttatttaaccctaaaataaacaatattc 132  Q
    |||||||||||||||||| |||| |||||||||    
T  31298965 tttacttatttaaccctataatatacaatattc 31298997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 13340589 - 13340704
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||  ||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||  |||||||| | | ||||||| |    
T  13340589 actaatttcataaatgaaattttttagagggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttagtatatttaaggggactattttc 13340688  T
Q  105 ttatttaaccctaaaa 120  Q
     |||||||||||||||    
T  13340689 atatttaaccctaaaa 13340704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 13340537 - 13340445
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    ||||| ||| ||||||||||||||||||||||| ||| |  |||||||||||||||||||| |||||||| | | ||||||||||||||||||    
T  13340537 aaaaattttggagggaccaaaagcctaaagaatgttttatagggactaaaatcaaatgttggtatatttaaggggactatttacttatttaac 13340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 24704400 - 24704308
Alignment:
Q  22 aaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacc 114  Q
    |||| |||||||||||||||||| |||| ||||||| |||| |||||||||||||| ||| |||||||||  |||| ||||||||||| ||||    
T  24704400 aaaattttagagggaccaaaagcataaataatattttagggagactaaaatcaaatattggtatatttagaggaaccatttacttattcaacc 24704308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 7359568 - 7359674
Alignment:
Q  8 taatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactta 107  Q
    |||||||||| ||  ||||||| | |||| |||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||   || | |||||||    
T  7359568 taatttcatagatggaaaattttgggggatcaaaagcctaaataatattttagggggagtaaaatcaaatgttggtatatttagggcgacgagttactta 7359667  T
Q  108 tttaacc 114  Q
    |||||||    
T  7359668 tttaacc 7359674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 34637512 - 34637425
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta-ggagaactatttacttatttaaccc 115  Q
    |||| |||||||||||| || |||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  34637512 tttaaagggaccaaaagtctcaagaatattttagggg-actaaaatcaaatgttggtatatttatggaga-ctatttacttatttaaccc 34637425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 6190648 - 6190565
Alignment:
Q  35 gaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta-ggagaactatttacttatttaaccctaaa 119  Q
    |||||||| |||||  ||||||||||| | |||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||    
T  6190648 gaccaaaaacctaagaaatatttaaggag-actaaaatcaaatgttgatatatttagggagatc-atttacttagttaaccctaaa 6190565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 12290063 - 12289979
Alignment:
Q  32 agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    ||||| ||||| ||||  |||||||| |||  | |||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  12290063 agggatcaaaaacctagggaatattttaggcaggctaaaatcaaatgttggtatatttagggagactatttacttatttaaccct 12289979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 30519774 - 30519672
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    ||||| |||||||||||||||| | |||| ||||||| |  | || ||||||||||||||| |||||||| ||  || ||||||||||||||||| | ||    
T  30519774 aaaaattttagagggaccaaaaacttaaataatattttaaagagattaaaatcaaatgttggtatattta-gacgaccatttacttatttaacccaacaa 30519676  T
Q  121 taaa 124  Q
    ||||    
T  30519675 taaa 30519672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 31298812 - 31298722
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattt-aggagaactatttacttatttaacccta 117  Q
    ||||||||||||||||||||||  ||||||| || |||| |||||| |||||||| ||| ||| | |||| | |||||||||||||||||||    
T  31298812 tttagagggaccaaaagcctaagaaatattttagagggattaaaattaaatgttggtatttttaaagagatc-atttacttatttaacccta 31298722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 24704769 - 24704815
Alignment:
Q  46 taaagaatatttaagggggactaaaatcaaatgttgatatatttagg 92  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  24704769 taaagaatattttaggggaactaaaatcaaatattgatatatttagg 24704815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 12290175 - 12290230
Alignment:
Q  65 actaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaat 121  Q
    |||||||| |||||||| |||||||||| || | |||||||||||||||||||||||    
T  12290175 actaaaattaaatgttggtatatttaggggatc-atttacttatttaaccctaaaat 12290230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 14365097 - 14365157
Alignment:
Q  28 ttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatt 88  Q
    |||||||||||||||  ||||  ||||||| ||  ||||||||||||||||||||||||||    
T  14365097 ttagagggaccaaaattctaagaaatattttagatggactaaaatcaaatgttgatatatt 14365157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 30749061 - 30748951
Alignment:
Q  6 actaatttcataaataaaaaatttaga-gggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||  |||||||||||| || ||||||    
T  30749061 actaatttcatagatgaaaaattttgaagggaccaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttac 30748962  T
Q  105 ttatttaaccc 115  Q
    |||||||||||    
T  30748961 ttatttaaccc 30748951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 30770512 - 30770402
Alignment:
Q  6 actaatttcataaataaaaaatttaga-gggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||  |||||||||||| || ||||||    
T  30770512 actaatttcatagatgaaaaattttgaagggaccaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttac 30770413  T
Q  105 ttatttaaccc 115  Q
    |||||||||||    
T  30770412 ttatttaaccc 30770402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 13765666 - 13765561
Alignment:
Q  6 actaatttcataaataaaaaat-ttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||| ||| ||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||   | |||||||    
T  13765666 actaatttcataaatgaaaaatattaaagggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagattatttac 13765567  T
Q  105 ttattt 110  Q
    ||||||    
T  13765566 ttattt 13765561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 16706498 - 16706596
Alignment:
Q  22 aaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgt---tgatatatttaggagaactatttacttatttaacccta 117  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||   || |||||||||| | ||||||||| ||||||||||||    
T  16706498 aaaattttagagggaccaaaaacctaaagaatattttagggggactaaaatcaaatgttggtggtatatttagggggactatttacatatttaacccta 16706596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 14760020 - 14760131
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||||||| || ||||||||   ||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||||| | | |  |||||||    
T  14760020 actaatttcatagatgaaaaattttaggggaccaaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttact 14760119  T
Q  106 tatttaacccta 117  Q
    ||||||||||||    
T  14760120 tatttaacccta 14760131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 16706450 - 16706333
Alignment:
Q  1 cagatactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaacta 99  Q
    |||| |||||||||||| || |||||||| ||| ||||||||||||||||||| |||| || |||||||||||||||||||| |||||||||  | | ||    
T  16706450 cagagactaatttcatagatgaaaaattttagaaggaccaaaagcctaaagaaaattttagagggactaaaatcaaatgttggtatatttagagggaata 16706351  T
Q  100 tttacttatttaacccta 117  Q
    ||| || |||||||||||    
T  16706350 ttttctcatttaacccta 16706333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 15393301 - 15393418
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| | || |||||||| |||||| ||||||| ||||||||| ||||||||||||| ||||||| || | || ||||||    
T  15393301 actaatttcataaatgaaaaatttcaaagagaccaaaaacctaaa-aatattttagggggactgaaatcaaatgttggtatatttcgggggaccatttac 15393399  T
Q  105 ttatttaaccctaaaataa 123  Q
    |||||||| || |||||||    
T  15393400 ttatttaatccaaaaataa 15393418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 32800271 - 32800381
Alignment:
Q  7 ctaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    ||||||||||| ||||||||||| ||||||||||||| |||| | ||||||| | | ||| ||||||||||| |||||||||||||  | ||||||||||    
T  32800271 ctaatttcatacataaaaaattttagagggaccaaaaacctacataatattttatgaggattaaaatcaaatattgatatatttagtgggactatttact 32800370  T
Q  106 tatttaaccct 116  Q
    ||||| |||||    
T  32800371 tatttgaccct 32800381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 22679488 - 22679585
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaa 118  Q
    |||||||||||||||||||||| |||||  ||||||| || |||||||||||||||||||| |||||||||| | |   |||||||||||||| ||||    
T  22679488 aaaaaatttagagggaccaaaaacctaacaaatattttagagggactaaaatcaaatgttggtatatttagggggatcgtttacttatttaactctaa 22679585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 30749102 - 30749199
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaa 118  Q
    ||||| |||||||| ||||||| | |||| ||||||| || || | |||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  30749102 aaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaaccctaa 30749199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 30770553 - 30770650
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaa 118  Q
    ||||| |||||||| ||||||| | |||| ||||||| || || | |||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  30770553 aaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaaccctaa 30770650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 15393227 - 15393145
Alignment:
Q  33 gggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccc 115  Q
    |||||||||||||||| |||||||| |||||||| ||||| |||| ||| |||||||  ||| ||||||||||||||||||||    
T  15393227 gggaccaaaagcctaaggaatattttagggggacgaaaattaaatattggtatatttgtgaggactatttacttatttaaccc 15393145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 22679421 - 22679335
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta 117  Q
    ||||||| |||| ||||||| |||||| ||||||| |||||||| ||||||||||||| ||  | ||||||||||||||||||||||    
T  22679421 gagggacaaaaaacctaaaggatattttagggggattaaaatcatatgttgatatattcagagggactatttacttatttaacccta 22679335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 20171480 - 20171380
Alignment:
Q  23 aaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaata 122  Q
    ||||||| ||||||||||||| ||||  ||||||| || |||||||||||||||||||| |||||| ||||| || ||||||||||| ||| || |||||    
T  20171480 aaaattttgagggaccaaaagtctaagaaatattttagagggactaaaatcaaatgttggtatattaaggag-accatttacttattcaactcttaaata 20171382  T
Q  123 aa 124  Q
    ||    
T  20171381 aa 20171380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 23528229 - 23528302
Alignment:
Q  40 aaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    |||||||||||||||||| ||  |||||||||| |||||||||||||||||| |  ||||||||||||||||||    
T  23528229 aaagcctaaagaatatttcagaaggactaaaattaaatgttgatatatttagaaagactatttacttatttaac 23528302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 30746882 - 30746773
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||||||  || ||| |||| ||||||| |||| |||||||||||||| | ||  ||||||||||||| ||  |||||||| | | || |||||||    
T  30746882 actaatttcatggatgaaatatttggagggacaaaaaacctaaagaatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttact 30746783  T
Q  106 tatttaaccc 115  Q
    ||||||||||    
T  30746782 tatttaaccc 30746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 30768333 - 30768224
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||||||  || ||| |||| ||||||| |||| |||||||||||||| | ||  ||||||||||||| ||  |||||||| | | || |||||||    
T  30768333 actaatttcatggatgaaatatttggagggacaaaaaacctaaagaatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttact 30768234  T
Q  106 tatttaaccc 115  Q
    ||||||||||    
T  30768233 tatttaaccc 30768224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 51941930 - 51941889
Alignment:
Q  75 aatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  51941930 aatgttgatatatttaggggaactatttacttatttaaccct 51941889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 35294443 - 35294358
Alignment:
Q  6 actaatttcataaataaaaaatttag-agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    ||||||||||| |||  ||||||| | ||||||||||||||| |  |||||||  |  ||||||||||||||||||||||||||||    
T  35294443 actaatttcatgaatgtaaaattttggagggaccaaaagcctcagaaatattttcgatggactaaaatcaaatgttgatatattta 35294358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 23485777 - 23485670
Alignment:
Q  9 aatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactta 107  Q
    |||||||||||| |||||||| |||||||||||||   |||| |  |||| |   ||||||||||||||| || |||||||||||   ||||||||||||    
T  23485777 aatttcataaatgaaaaattttagagggaccaaaaatttaaaaagcattttaaatggactaaaatcaaatattaatatatttagggagactatttactta 23485678  T
Q  108 tttaaccc 115  Q
    || |||||    
T  23485677 ttcaaccc 23485670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 8819080 - 8819021
Alignment:
Q  30 agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    |||||||| ||| ||||||| ||||||| |||| || |||||||||||||| |||||||||    
T  8819080 agagggactaaatgcctaaaaaatattttagggagattaaaatcaaatgtt-atatattta 8819021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 23485857 - 23485925
Alignment:
Q  44 cctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaa 112  Q
    |||||||||||||| || || | ||||||||||| ||| ||| |||||||| |  ||||||||||||||    
T  23485857 cctaaagaatattttagaggaattaaaatcaaattttggtatgtttaggaggatcatttacttatttaa 23485925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 30746964 - 30747019
Alignment:
Q  62 gggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaa 118  Q
    ||||||||||| |||||||| |||||||| ||  | |||||||||||||||||||||    
T  30746964 gggactaaaatgaaatgttggtatattta-gatgattatttacttatttaaccctaa 30747019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 30768415 - 30768470
Alignment:
Q  62 gggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaa 118  Q
    ||||||||||| |||||||| |||||||| ||  | |||||||||||||||||||||    
T  30768415 gggactaaaatgaaatgttggtatattta-gatgattatttacttatttaaccctaa 30768470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 51900164 - 51900116
Alignment:
Q  65 actaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    |||||||||||||||||  |||||||| || || |||||||||||||||    
T  51900164 actaaaatcaaatgttggaatatttagaaggaccatttacttatttaac 51900116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 13552824 - 13552917
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacc 114  Q
    ||||| |||||| |||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  13552824 aaaaattttagaaggaccaaaagcctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaacc 13552917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 54164576 - 54164459
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||  |||||| | | ||||||||||||||||||| ||||||||| |  |||||||||    
T  54164576 actaatttcataaatgaaaaattttagatggaccaaaagcctaaaatatattttatgaggactaaaatcaaatgttggtatatttagaacgactatttac 54164477  T
Q  105 ttatttaaccctaaaata 122  Q
    |||||||||||| |||||    
T  54164476 ttatttaacccttaaata 54164459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 33752681 - 33752791
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||| ||| ||| ||||||||| || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||  || ||  ||||||    
T  33752681 actaatttaatagatagaaaatttag-ggaaccaaaagcctaaagaatattttagggagactaaaatcaaatgttgatatatttaaaaggaccgtttact 33752779  T
Q  106 tatttaacccta 117  Q
    ||||||||||||    
T  33752780 tatttaacccta 33752791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 54164612 - 54164724
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| ||||||||| ||| |||||| ||||||| |  | |||||||||||||||||| ||||||||||   |||||||||    
T  54164612 actaatttcataaatgaaaaattttagagggaccgaaaacctaaaaaatattttatagagactaaaatcaaatgttggtatatttagggagactatttac 54164711  T
Q  105 ttatttaacccta 117  Q
    |||||||||||||    
T  54164712 ttatttaacccta 54164724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 28687623 - 28687716
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccc 115  Q
    ||||| |||||||||||||||| |||||| ||||||| || |  ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28687623 aaaaattttagagggaccaaaaccctaaaaaatattttagagtaactaaaatcaaatgttgatatattta-aagaactatttacttatttaaccc 28687716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 17431132 - 17431192
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag 91  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  17431132 gagggaccaaaagcctaaaaaatattttagggggactaaaatcaaatgttgatatatttag 17431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 32186616 - 32186722
Alignment:
Q  8 taatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactta 107  Q
    ||||||||||||| |||| ||||||| ||||||||||||||||||||||| || || |||||||| |||||||| |||||||| | | || |||| ||||    
T  32186616 taatttcataaatgaaaattttagagagaccaaaagcctaaagaatattttagaggaactaaaattaaatgttggtatatttaag-ggaccattttctta 32186714  T
Q  108 tttaaccc 115  Q
    ||||||||    
T  32186715 tttaaccc 32186722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 7513637 - 7513526
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| ||| | |||||||||||||| ||||||| | ||  | |||||| |||||||| |||||||||  || ||||||||    
T  7513637 actaatttcataaatgaaaaattttagatgaaccaaaagcctaaaaaatattttaaggtaattaaaattaaatgttggtatatttagaggagctatttac 7513538  T
Q  105 ttatttaaccct 116  Q
    ||||||||||||    
T  7513537 ttatttaaccct 7513526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 34665148 - 34665235
Alignment:
Q  29 tagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||| ||| |||||||||||| ||||||| |||| |||||||||||||||||| ||||||||  |  || ||||||||||||||||||    
T  34665148 tagaaggaacaaaagcctaaaaaatattttagggtgactaaaatcaaatgttggtatatttaatattaccatttacttatttaaccct 34665235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 13552785 - 13552660
Alignment:
Q  1 cagatactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaa-tcaaatgttgatatatttaggagaact 98  Q
    |||| ||||||||||||||| |||||||| |||  |||||||||| |||| |||||||   ||||||||||| |||||| ||  ||||||||||   | |    
T  13552785 cagagactaatttcataaatgaaaaattttagaacgaccaaaagcttaaaaaatattttttggggactaaaaatcaaatattagtatatttagggagatt 13552686  T
Q  99 atttacttatttaaccctaaaataaa 124  Q
    ||||||||||||||||| ||||||||    
T  13552685 atttacttatttaacccaaaaataaa 13552660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 33752410 - 33752327
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    |||||||||||| ||  |||||||  | |||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  33752410 actaatttcatagatggaaaattttaaaggactaaaagcc-aaagaatattttagggggactaaaatcaaatattgatatattta 33752327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 17430790 - 17430737
Alignment:
Q  38 caaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag 91  Q
    ||||||||||| |||||||| || |||||||||||||||||||| |||||||||    
T  17430790 caaaagcctaaggaatattttagagggactaaaatcaaatgttggtatatttag 17430737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 34665068 - 34665003
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttagg 92  Q
    |||||||||  ||||| |||||||||||||| | ||||||||||||||||||||  ||||||||||    
T  34665068 tttagaggggtcaaaaacctaaagaatattttaaggggactaaaatcaaatgttagtatatttagg 34665003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 16854813 - 16854892
Alignment:
Q  45 ctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaataaa 124  Q
    |||| |||||||| ||  ||||||||||  ||||||||| |||||||||  ||||||||||||||||||| || ||||||    
T  16854813 ctaaggaatattttagacggactaaaatttaatgttgatctatttaggacgactatttacttatttaaccatagaataaa 16854892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 17615706 - 17615621
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag 91  Q
    |||||||||||| ||  ||||||| | ||||| ||||||||||   |||||| ||| ||||||||||||||| || ||||||||||    
T  17615706 actaatttcatagatggaaaattttgggggactaaaagcctaagatatattttaggaggactaaaatcaaatattcatatatttag 17615621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 32185373 - 32185283
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    ||||| ||||||| |||||| | ||||| |||| |||| | |||||||||||||||||||| |||||||||  | |||||||||| |||||||    
T  32185373 aaaaattttagagagaccaacaacctaa-gaattttta-gagggactaaaatcaaatgttggtatatttagagggactatttactcatttaac 32185283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 31079008 - 31078970
Alignment:
Q  34 ggaccaaaagcctaaagaatatttaagggggactaaaat 72  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  31079008 ggaccaaaagcctaatgaatattttagggggactaaaat 31078970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 53343756 - 53343707
Alignment:
Q  64 gactaaaatcaaatgttgatatatttaggagaactatttacttatttaac 113  Q
    ||||||||||||| |||| |||||||| ||| || |||||||||||||||    
T  53343756 gactaaaatcaaacgttggtatatttaagaggaccatttacttatttaac 53343707  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 981058 - 981169
Alignment:
Q  1 cagatactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag-gagaact 98  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||| |||    
T  981058 cagagactaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatatttta-ggggactaaaatcaaatgttggtatatttagagag-act 981155  T
Q  99 atttacttatttaa 112  Q
    ||||||||||||||    
T  981156 atttacttatttaa 981169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 32945719 - 32945607
Alignment:
Q  8 taatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactta 107  Q
    |||||||||||||||||| |||||||||| |||||  ||||| ||||||| | ||||||||||||||||||||| ||||||| || | ||||||||| ||    
T  32945719 taatttcataaataaaaattttagagggatcaaaaatctaaataatattttatggggactaaaatcaaatgttggtatattttgggggactatttaccta 32945620  T
Q  108 tttaaccctaaaa 120  Q
    |||||||| ||||    
T  32945619 tttaacccaaaaa 32945607  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 16192593 - 16192671
Alignment:
Q  39 aaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta 117  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  16192593 aaaagcctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttatttaacccta 16192671  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 12874826 - 12874934
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||| ||| ||||||||||||| |||||| ||||||| || |||||||||||||||| ||| ||||||| |||  |||||||||    
T  12874826 actaatttcataaatgaaaacttttagagggaccaaaaacctaaataatattttagagggactaaaatcaaatattggtatatttgggaagactatttac 12874925  T
Q  105 ttatttaac 113  Q
    |||||||||    
T  12874926 ttatttaac 12874934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 16128028 - 16127920
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||||| ||||||||||||| |||| | ||||||| ||| |||||||||| |||||||| |||||||| | | |||||||||    
T  16128028 actaatttcataaatgaaaaattttagagggaccaaaaacctacataatattttaggaggactaaaattaaatgttggtatatttaaggggactatttac 16127929  T
Q  105 ttatttaac 113  Q
    |||||||||    
T  16127928 ttatttaac 16127920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 4921309 - 4921423
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag-gagaactattta 103  Q
    |||||||||||| || |||| ||| |||||||| ||||  ||||| ||||||| | ||||| ||||||||||||||||||||||||| ||| ||||||||    
T  4921309 actaatttcatagatgaaaatttttagagggacaaaaaatctaaaaaatattttaaggggattaaaatcaaatgttgatatatttagagag-actattta 4921407  T
Q  104 cttatttaaccctaaa 119  Q
     |||||||||||||||    
T  4921408 tttatttaaccctaaa 4921423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 18509590 - 18509495
Alignment:
Q  22 aaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta 117  Q
    |||| ||| |||||||||||| || || |||||||| || |||||||||||||||||||| |||||||||| | || ||||| |||||||||||||    
T  18509590 aaaattttggagggaccaaaaaccaaaggaatattttagagggactaaaatcaaatgttggtatatttagggggaccatttaattatttaacccta 18509495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 25330630 - 25330560
Alignment:
Q  45 ctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccc 115  Q
    |||||||| |||| || |||||||||||||||||||||| |||||||| | ||||||||||||||||||||    
T  25330630 ctaaagaaaattttagagggactaaaatcaaatgttgatgtatttagggggactatttacttatttaaccc 25330560  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 37897663 - 37897574
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||||||| ||| ||||| |||||||| || |||| ||||||||||||||| | ||||||||||  |||||| |||||||||||||    
T  37897663 tttagagggaccgaaaacctaaggaatattttagagggagtaaaatcaaatgttggtctatttaggagggctatttccttatttaaccct 37897574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 26403114 - 26403030
Alignment:
Q  8 taatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag 91  Q
    ||||||||| ||| |||||||| |||  |||||||||||| |||||||||| ||||||||||||||||||| || ||||||||||    
T  26403114 taatttcattaatgaaaaattttagacagaccaaaagcctgaagaatattttagggggactaaaatcaaattttaatatatttag 26403030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 30714231 - 30714117
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||||||| ||| ||||||| |||| || ||||| ||||| ||||||| | |  ||||||||||||||||||||||||||| | | || ||||||     
T  30714231 actaatttcatagatagaaaattttgaggaacaaaaaggctaaaaaatattttaagaagactaaaatcaaatgttgatatatttaaggggaccatttac- 30714133  T
Q  106 tatttaaccctaaaat 121  Q
    ||||||||||| ||||    
T  30714132 tatttaaccctcaaat 30714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 7328466 - 7328558
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    |||||||||||||| | |||||||||||||| | ||| |||||| |||||||||  ||||||||||   |||||||||||||||||||| ||||    
T  7328466 tttagagggaccaataacctaaagaatattttatggg-actaaagtcaaatgttagtatatttagggagactatttacttatttaacccaaaaa 7328558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 12874768 - 12874679
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    ||||||| ||||||||| |||| | |||||| |  ||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||||    
T  12874768 tttagagagaccaaaagtctaagggatattttaaagggaccaaaatcaaatgttggtatatttagggaaaccatttacttatttaaccct 12874679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 27847945 - 27847860
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaa 112  Q
    |||| ||||||||||| | ||| |||||||| | | ||||||||||||||||||| |||||||| | | |||||||||||||||||    
T  27847945 tttaaagggaccaaaaacttaaggaatattttaagtggactaaaatcaaatgttggtatatttatggggactatttacttatttaa 27847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 39786396 - 39786311
Alignment:
Q  35 gaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaa 120  Q
    ||||||||| |||| ||| |||| || | |||||||||||||||||| ||||||||  || | |||||||||||||||||||||||    
T  39786396 gaccaaaagtctaaggaaaattttagcgagactaaaatcaaatgttggtatatttaataggattatttacttatttaaccctaaaa 39786311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 16126330 - 16126222
Alignment:
Q  6 actaatttcataaat-aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||| |||||||||| ||||||||||||||||| |||| | || | |||| || ||| |||||||||| |||||||| |||||||| | | ||| |||||    
T  16126330 actagtttcataaatgaaaaaatttagagggacaaaaaacgtacataataatttaggaggactaaaattaaatgttggtatatttaaggggactgtttac 16126231  T
Q  105 ttatttaac 113  Q
    |||||||||    
T  16126230 ttatttaac 16126222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 16333295 - 16333403
Alignment:
Q  6 actaatttcataaat-aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| ||||||||||||||||| |||| | || | |||| || ||| ||| |||||| |||||||| |||||||| | | ||| |||||    
T  16333295 actaatttcataaatgaaaaaatttagagggacaaaaaacgtacataataatttaggaggattaaaattaaatgttggtatatttaaggggactgtttac 16333394  T
Q  105 ttatttaac 113  Q
    |||||||||    
T  16333395 ttatttaac 16333403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 43130289 - 43130404
Alignment:
Q  6 actaatttcataaataaaaaatttag-agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||| |||  ||||||| | ||||||||||||||||| ||| ||||  | |||||| |||||||||| || ||||||||||   || ||||||    
T  43130289 actaatttcatgaatggaaaattttggagggaccaaaagcctaaggaaaattttggagggactgaaatcaaatg-tggtatatttagggagaccatttac 43130387  T
Q  105 ttatttaaccctaaaat 121  Q
    |||||||||||||||||    
T  43130388 ttatttaaccctaaaat 43130404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 4921254 - 4921179
Alignment:
Q  30 agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    ||||||||||||||| ||| |||||||| | ||| | ||||||||||| ||| ||||||||||||||| |||||||    
T  4921254 agagggaccaaaagcttaaggaatattttaagggaattaaaatcaaatattggtatatttaggagaacaatttact 4921179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 8185302 - 8185251
Alignment:
Q  34 ggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatat 85  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  8185302 ggaccaaaagcctaaataatattttagggggactaaaatcaaatgtttatat 8185251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 16333259 - 16333154
Alignment:
Q  6 actaatttcataaataaaaaat-ttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||| ||||| | |||| || |||||||||||||| ||| | | ||||||||||| |||||||||||| ||| |  ||||||    
T  16333259 actaatttcataaatgaaaaatgttagaagaaccagaaacctaaagaatattttaggcg-attaaaatcaaattttgatatatttatgaggatcatttac 16333161  T
Q  105 ttattta 111  Q
    |||||||    
T  16333160 ttattta 16333154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 981032 - 980944
Alignment:
Q  1 cagatactaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    |||| |||||||||||| ||||||  |||   ||||||||||||||||  ||||||| || || ||||||||||||||||||||||||||    
T  981032 cagagactaatttcatagataaaattttttaggggaccaaaagcctaagaaatattttagagg-actaaaatcaaatgttgatatattta 980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 20972385 - 20972478
Alignment:
Q  22 aaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccc 115  Q
    |||| ||||| |||||||||| |||||  |||||||   ||||||||||||||||||||||||||||||   | || ||| |||||||||||||    
T  20972385 aaaattttagcgggaccaaaaacctaagaaatattttttggggactaaaatcaaatgttgatatatttaaagggaccattcacttatttaaccc 20972478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 35926870 - 35926955
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    |||||||||||||||||||||||| ||||  | ||||| |||||| ||||||| |  | |||||||||||||||||| ||||||||    
T  35926870 actaatttcataaataaaaaattttagagaaatcaaaaacctaaaaaatattttattgagactaaaatcaaatgttggtatattta 35926955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 39786493 - 39786569
Alignment:
Q  35 gaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaa 112  Q
    ||||||||  ||||| ||||||| |||||||||||||| ||||| || |||||||| ||| |||||||||||||||||    
T  39786493 gaccaaaattctaaaaaatattttagggggactaaaattaaatgctggtatatttatgag-actatttacttatttaa 39786569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 32483752 - 32483645
Alignment:
Q  10 atttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttat 108  Q
    ||||||||||| |||| ||| ||||  |||||||||||||| ||||||| | ||| | |||||||||||||   ||||||||   ||| |||||||||||    
T  32483752 atttcataaatgaaaatttttagagaaaccaaaagcctaaaaaatattttatgggaattaaaatcaaatgtcagtatatttaaaggaattatttacttat 32483653  T
Q  109 ttaaccct 116  Q
    ||||||||    
T  32483652 ttaaccct 32483645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 32945752 - 32945868
Alignment:
Q  1 cagatactaatttcataaat-aaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaact 98  Q
    |||| ||||||||||||||| ||||||||| |||| ||  |||| |||| ||||||||| | ||  | ||||||||||| ||| |||||||||||  | |    
T  32945752 cagagactaatttcataaattaaaaaatttgagagagataaaaaacctagagaatattttatggaaattaaaatcaaattttggtatatttagga--att 32945849  T
Q  99 atttacttatttaacccta 117  Q
    |||||||||||||||||||    
T  32945850 atttacttatttaacccta 32945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 35926834 - 35926747
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttagg 92  Q
    ||||||||||||||| |||  ||| ||||| || |||| |||||| ||||||| | || |||||||||||||||||| ||||||||||    
T  35926834 actaatttcataaatgaaatgttttagaggaactaaaaacctaaaaaatattttatggagactaaaatcaaatgttggtatatttagg 35926747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 16126366 - 16126471
Alignment:
Q  6 actaatttcataaataaaaaat-ttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||| |||||| ||||| | |||| || |||||||||||||| ||| | | ||||||||||| ||| |||||||| ||| |  ||||||    
T  16126366 actaatttcataaatgaaaaatgttagaagaaccagaaacctaaagaatattttaggcg-attaaaatcaaattttggtatatttatgaggatcatttac 16126464  T
Q  105 ttattta 111  Q
    |||||||    
T  16126465 ttattta 16126471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 18560573 - 18560519
Alignment:
Q  38 caaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttagg 92  Q
    |||||| |||| |||||||| | || |||||||||||||||||||||||||||||    
T  18560573 caaaagtctaaggaatattttaaggagactaaaatcaaatgttgatatatttagg 18560519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 39159267 - 39159350
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||||||| ||||||||||||||    ||  |||||||||||||||  |||||||| ||| |||||| ||||||||||||||    
T  39159267 gagggaccaaaatcctaaagaatatttttatgg--ctaaaatcaaatgttagtatatttaagaggactattaacttatttaaccct 39159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 37897727 - 37897807
Alignment:
Q  34 ggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttag-gagaactatttacttatttaacc 114  Q
    |||||||||||||||  ||||||| ||| |||||||||  |||||||| ||||||||| ||| ||| |||||||||||||||    
T  37897727 ggaccaaaagcctaagaaatattttaggaggactaaaacaaaatgttggtatatttagtgag-actttttacttatttaacc 37897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 40152809 - 40152701
Alignment:
Q  5 tactaatttcataaat-aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactattta 103  Q
    ||||||||||||| || ||||| ||| ||||||| ||||  |||| |||||||| ||| |||||||||| |||||||  ||||||||  || || |||||    
T  40152809 tactaatttcatagatgaaaaattttggagggacaaaaaatctaaggaatattttaggaggactaaaataaaatgtttgtatattta-aaggaccattta 40152711  T
Q  104 cttatttaac 113  Q
    ||||||||||    
T  40152710 cttatttaac 40152701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 7328443 - 7328357
Alignment:
Q  6 actaatttcataaat-aaaaaatttagagggaccaaaagccta-aagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||| || |||||||  | |||||| |||||||||| || ||||||||    
T  7328443 actaatttcataaatgaaaaattttagagggactaaaaacctacaaaaatattttggagggactgaaatcaaatgatggtatattta 7328357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 30173597 - 30173707
Alignment:
Q  5 tactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactattta 103  Q
    ||||||||||||| ||| ||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||  ||||||||     
T  30173597 tactaatttcatagatataaaattttagagggatcaaaagcctaaagaaaattttagggggactaaaatcaaatattggtatatttagggaaactatttt 30173696  T
Q  104 cttatttaacc 114  Q
    |||||||||||    
T  30173697 cttatttaacc 30173707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 45405047 - 45405162
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||||||| ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||| | | ||  || |||    
T  45405047 actaatttcatagataaaaattttggagggactaaaagcctaaagaatattttagggggactaaaatcaaatgttagtatatttaaggggacagttaact 45405146  T
Q  106 tatttaaccctaaaat 121  Q
    ||||||||| ||||||    
T  45405147 tatttaaccataaaat 45405162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 4475245 - 4475363
Alignment:
Q  2 agatactaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactat 100  Q
    |||||||||||||||| ||||||||||| ||| ||| ||||| ||||||||| |||| |  | || |||||||||||||||||||||||||||| |||||    
T  4475245 agatactaatttcatagataaaaaattttagaaggatcaaaaacctaaagaaaattttaaagtgattaaaatcaaatgttgatatatttaggagcactat 4475344  T
Q  101 ttacttatttaaccctaaa 119  Q
    || || |||||||||||||    
T  4475345 tttctaatttaaccctaaa 4475363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 30172150 - 30172069
Alignment:
Q  36 accaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta 117  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  30172150 accaaaaacctaaagaatattttaaggggactaaaatcaaatgttgatatatttagggggaccatttacttatttaacccta 30172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 30430363 - 30430271
Alignment:
Q  22 aaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacc 114  Q
    |||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||  | || ||||||||||||||||    
T  30430363 aaaattttagagggaccaaaagcctaaagaatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 2928204 - 2928096
Alignment:
Q  6 actaatttcataaataaaaaatttag-agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||| |||  ||||||| | ||||||||||||||||| ||| |||| || ||||||| |||||||||||| |||||||||||| || ||||||    
T  2928204 actaatttcatgaatggaaaattttggagggaccaaaagcctaaggaaaattttagagggactagaatcaaatgttggtatatttaggaggaccatttac 2928105  T
Q  105 ttatttaac 113  Q
    |||||||||    
T  2928104 ttatttaac 2928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 32618934 - 32619043
Alignment:
Q  8 taatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttactt 106  Q
    |||||| |||||| |||||||| ||||| || ||||  ||||| ||||||| ||   ||||||||||||||||||||||||||||  |||||||||||||    
T  32618934 taattttataaatgaaaaattttagaggaactaaaaatctaaaaaatattttagaaagactaaaatcaaatgttgatatatttagatgaactatttactt 32619033  T
Q  107 atttaaccct 116  Q
    ||||||||||    
T  32619034 atttaaccct 32619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 4304253 - 4304138
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| ||  ||||||| ||| ||||||||||| |||  ||||||| ||| ||||||||||||||||||| |||||||| | | || |||||     
T  4304253 actaatttcatatatgtaaaattttagaaggaccaaaagcttaagaaatattttaggaggactaaaatcaaatgttggtatatttaaggggacgatttat 4304154  T
Q  105 ttatttaaccctaaaa 120  Q
    ||||||||||||||||    
T  4304153 ttatttaaccctaaaa 4304138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 34502690 - 34502623
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggag 94  Q
    ||||||||||| ||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||    
T  34502690 tttagagggacgaaaagcctaaaaaatattttatagggactaaaatcaaatgttgatatatttaggag 34502623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 4475214 - 4475108
Alignment:
Q  6 actaatttcataaataaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttact 105  Q
    |||||||||||| || |||| |||  | |||  |||| |||||||||||||| ||||| | ||||||||||||||| |||||||||||| ||| ||||||    
T  4475214 actaatttcatagatgaaaatttttaaaggattaaaaccctaaagaatattttaggggaattaaaatcaaatgttggtatatttaggaggactttttact 4475115  T
Q  106 tatttaa 112  Q
    |||||||    
T  4475114 tatttaa 4475108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 6931086 - 6931198
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||| |||| |||||||| |||| || ||||| |||||  ||| ||| |  |||||||||||||||||||  |||||||| ||| |||||||||    
T  6931086 actaatttcaaaaatgaaaaattttagagagatcaaaaacctaagaaatgttttaaagggactaaaatcaaatgttagtatatttaagaggactatttac 6931185  T
Q  105 ttatttaacccta 117  Q
    |||||||||||||    
T  6931186 ttatttaacccta 6931198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 27614090 - 27614008
Alignment:
Q  39 aaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaat 121  Q
    ||||| ||||||||||||| | || ||||||||| |||||||| |||||||||| |||||||||||||  ||||||| |||||    
T  27614090 aaaagtctaaagaatattttatggagactaaaattaaatgttggtatatttaggggaactatttacttgattaacccaaaaat 27614008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 4304333 - 4304404
Alignment:
Q  45 ctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||| |||||||| || |||||||||||||||||||| ||||||||||   | |||||||||||||||||||    
T  4304333 ctaatgaatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaaccct 4304404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 41993144 - 41993207
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    |||||||||| |||||||||||| ||||||| |||| || ||||||||||| ||||||||||||    
T  41993144 tttagagggatcaaaagcctaaaaaatattttagggagattaaaatcaaatattgatatattta 41993207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 10821918 - 10821862
Alignment:
Q  27 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgat 83  Q
    ||||||||||||||||||||||| ||||||| | || ||||||||| ||||||||||    
T  10821918 tttagagggaccaaaagcctaaaaaatattttacggtgactaaaataaaatgttgat 10821862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 19279949 - 19279899
Alignment:
Q  66 ctaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    |||||||||||||||| |||| ||||| |||||| ||||||||||||||||    
T  19279949 ctaaaatcaaatgttggtatacttaggggaactacttacttatttaaccct 19279899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 28725683 - 28725770
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatat---atttaggagaactatttacttatttaaccct 116  Q
    |||||||||||| ||||| ||||||||  ||| |||||||||||||||||| |||   ||||||| | || ||||||||||||||||||    
T  28725683 gagggaccaaaaacctaatgaatatttt-gggagactaaaatcaaatgttggtattatatttagggggaccatttacttatttaaccct 28725770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 43907899 - 43907976
Alignment:
Q  39 aaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta 117  Q
    |||| |||||| ||||||| ||||||||||||||||||| ||  |||||||| | || | |||||||||||||||||||    
T  43907899 aaaaacctaaaaaatattttagggggactaaaatcaaatattagtatatttaagggatc-atttacttatttaacccta 43907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 8896043 - 8896145
Alignment:
Q  35 gaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacccta----aaataaacaatat 130  Q
    |||||||||| |||||||||||| |||| ||||||||| |||||||| | |||||| ||  |  | ||||||||||||||||     |||||||||||||    
T  8896043 gaccaaaagcttaaagaatattttagggagactaaaattaaatgttggtgtatttaagatgatcacttacttatttaaccctttatgaaataaacaatat 8896142  T
Q  131 tct 133  Q
    |||    
T  8896143 tct 8896145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 44094262 - 44094174
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatg-ttgatatatttagg 92  Q
    ||||||||||| ||||||| |||| | |||||||||||||||||  ||||||| ||  ||| |||||||||||| ||| ||||||||||    
T  44094262 actaatttcatgaataaaatattttaaagggaccaaaagcctaagaaatattttagaaggattaaaatcaaatgtttggtatatttagg 44094174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 44094314 - 44094373
Alignment:
Q  31 gagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatattta 90  Q
    |||||||||||| |||||  |||||||   || |||||||||||||||||||||||||||    
T  44094314 gagggaccaaaaccctaagaaatattttcaggagactaaaatcaaatgttgatatattta 44094373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 29491450 - 29491409
Alignment:
Q  35 gaccaaaagcctaaagaatatttaagggggactaaaatcaaa 76  Q
    |||||||| | |||||||||||| ||||||||||||||||||    
T  29491450 gaccaaaaacataaagaatattttagggggactaaaatcaaa 29491409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 30430672 - 30430720
Alignment:
Q  64 gactaaaatcaaatgttgatatatttaggagaactatttacttatttaa 112  Q
    ||||||||| |||| |||||||||||||| | || ||||||||||||||    
T  30430672 gactaaaattaaatattgatatatttagggggaccatttacttatttaa 30430720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 63971 - 64082
Alignment:
Q  6 actaatttcataaataaaaaattt-agagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    |||||||||||| || |||||||| |||||||| |||| |||||| ||||||| ||||| |||||||| |||||||| ||||||||||   |||||||||    
T  63971 actaatttcatagatgaaaaatttgagagggactaaaaacctaaataatattttaggggaactaaaattaaatgttggtatatttagggagactatttac 64070  T
Q  105 ttatttaaccct 116  Q
    | ||||||||||    
T  64071 tgatttaaccct 64082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 63919 - 63826
Alignment:
Q  21 aaaaaatttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccct 116  Q
    ||||| |||| || |||||||| |||| |||| |||| | ||| ||||||||||||||||| ||||||||| || | ||||| |||||||||||||    
T  63919 aaaaattttaaagagaccaaaaacctatagaaaattttatggg-actaaaatcaaatgttg-tatatttagaagtagtattttcttatttaaccct 63826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 27080 - 26987
Alignment:
Q  36 accaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaaccctaaaataaacaata 129  Q
    |||||||||||||| ||||||| ||| |||||||||| ||| ||||||||||||||| |||| ||||| |||||||| | ||||||||| ||||    
T  27080 accaaaagcctaaataatattttaggaggactaaaattaaacgttgatatatttaggggaaccatttagttatttaagcttaaaataaataata 26987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 11119 - 11009
Alignment:
Q  6 actaatttcataaataaaaaa-tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttac 104  Q
    ||||||||||||||||||||| ||||||| ||| ||||  ||||||||||||| |  || ||||||||||| ||||  |||||||| ||  |||||||||    
T  11119 actaatttcataaataaaaaaatttagagagactaaaaatctaaagaatattttaaaggaactaaaatcaactgttagtatattta-gaatactatttac 11021  T
Q  105 ttatttaaccct 116  Q
    ||||||||||||    
T  11020 ttatttaaccct 11009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 1717 - 1636
Alignment:
Q  6 actaatttcataaataaaaaatttaga-gggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatat 87  Q
    ||||||||||| ||| |||| ||| || ||||||||||||||||  ||||||| || ||||||||||| |||| |||||||||    
T  1717 actaatttcatgaatgaaaatttttgaagggaccaaaagcctaattaatattttagagggactaaaat-aaattttgatatat 1636  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 6354 - 6273
Alignment:
Q  32 agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggagaactatttacttatttaacc 114  Q
    ||||||||||| |||||||||||||| ||   || | ||||||||||||| |||||||| ||| || ||||| ||||||||||    
T  6354 agggaccaaaaccctaaagaatattttagaaagattgaaatcaaatgttggtatatttaagag-accatttatttatttaacc 6273  T

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