View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11828_high_7 (Length: 474)

Name: NF11828_high_7
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11828_high_7
NF11828_high_7
[»] chr5 (36 HSPs)
chr5 (265-441)||(16883393-16883567)
chr5 (17-114)||(16883747-16883844)
chr5 (71-115)||(3398218-3398262)
chr5 (71-115)||(18841841-18841885)
chr5 (72-115)||(24014823-24014866)
chr5 (72-115)||(29856005-29856048)
chr5 (74-115)||(3738011-3738052)
chr5 (70-111)||(26376709-26376750)
chr5 (220-264)||(16883588-16883632)
chr5 (57-106)||(2795508-2795557)
chr5 (70-115)||(11250092-11250137)
chr5 (70-107)||(11636729-11636766)
chr5 (70-115)||(30328462-30328507)
chr5 (70-106)||(14466634-14466670)
chr5 (70-106)||(30839779-30839815)
chr5 (70-106)||(31366096-31366132)
chr5 (70-106)||(36597577-36597613)
chr5 (71-115)||(40166250-40166294)
chr5 (215-257)||(2795664-2795706)
chr5 (216-254)||(32019982-32020020)
chr5 (73-115)||(33072677-33072719)
chr5 (73-115)||(39043150-39043192)
chr5 (72-106)||(40512951-40512985)
chr5 (215-252)||(3398361-3398398)
chr5 (215-252)||(4047553-4047590)
chr5 (70-107)||(5958267-5958304)
chr5 (74-115)||(11692767-11692808)
chr5 (70-107)||(18150376-18150413)
chr5 (75-115)||(8103715-8103755)
chr5 (215-255)||(12641990-12642030)
chr5 (71-107)||(15241236-15241272)
chr5 (71-115)||(16160889-16160933)
chr5 (71-115)||(26265182-26265226)
chr5 (216-252)||(30839923-30839959)
chr5 (224-252)||(34333183-34333211)
chr5 (216-252)||(36597721-36597757)
[»] chr8 (57 HSPs)
chr8 (70-115)||(38843701-38843746)
chr8 (71-115)||(45005968-45006012)
chr8 (65-115)||(38213081-38213131)
chr8 (71-115)||(9580245-9580289)
chr8 (72-115)||(7750667-7750710)
chr8 (73-115)||(26682068-26682110)
chr8 (70-115)||(36967206-36967251)
chr8 (71-115)||(11117133-11117177)
chr8 (71-107)||(12131981-12132017)
chr8 (71-115)||(12189724-12189768)
chr8 (71-115)||(12434152-12434196)
chr8 (71-106)||(31812111-31812146)
chr8 (72-115)||(34869658-34869701)
chr8 (71-113)||(11923013-11923055)
chr8 (215-257)||(40225982-40226024)
chr8 (61-106)||(2161376-2161421)
chr8 (74-115)||(5911983-5912024)
chr8 (73-110)||(11977281-11977318)
chr8 (70-107)||(14816269-14816306)
chr8 (70-107)||(14829434-14829471)
chr8 (74-111)||(23840237-23840274)
chr8 (74-115)||(33430249-33430290)
chr8 (215-256)||(38212940-38212981)
chr8 (70-106)||(3306199-3306235)
chr8 (71-115)||(8284705-8284749)
chr8 (71-107)||(13496876-13496912)
chr8 (216-252)||(26834703-26834739)
chr8 (71-115)||(32186184-32186228)
chr8 (71-115)||(38527819-38527863)
chr8 (71-115)||(43717688-43717732)
chr8 (71-106)||(7140603-7140638)
chr8 (71-106)||(10129102-10129137)
chr8 (73-111)||(12346006-12346044)
chr8 (73-107)||(35678418-35678452)
chr8 (73-115)||(37523758-37523800)
chr8 (216-257)||(2161529-2161570)
chr8 (215-252)||(7140459-7140496)
chr8 (215-252)||(10129244-10129281)
chr8 (74-115)||(11947035-11947076)
chr8 (215-252)||(13496709-13496746)
chr8 (215-252)||(18567416-18567453)
chr8 (215-252)||(22838366-22838403)
chr8 (215-252)||(27874681-27874718)
chr8 (215-252)||(28014858-28014895)
chr8 (215-252)||(31812254-31812291)
chr8 (216-252)||(3306055-3306091)
chr8 (215-251)||(13327942-13327978)
chr8 (70-106)||(13328085-13328121)
chr8 (70-106)||(19343981-19344017)
chr8 (216-252)||(26682210-26682246)
chr8 (70-102)||(26834558-26834590)
chr8 (215-251)||(28866932-28866968)
chr8 (224-252)||(29642753-29642781)
chr8 (70-106)||(33514645-33514681)
chr8 (74-106)||(39701947-39701979)
chr8 (70-106)||(40210965-40211001)
chr8 (70-106)||(40716272-40716308)
[»] chr7 (37 HSPs)
chr7 (70-115)||(4969770-4969815)
chr7 (70-115)||(29398250-29398295)
chr7 (71-115)||(29692676-29692720)
chr7 (71-115)||(45501457-45501501)
chr7 (78-115)||(39475853-39475890)
chr7 (74-115)||(47457597-47457638)
chr7 (73-115)||(19868114-19868156)
chr7 (70-115)||(19889338-19889383)
chr7 (75-115)||(820673-820713)
chr7 (70-106)||(9331959-9331995)
chr7 (70-106)||(24250311-24250347)
chr7 (70-106)||(33342986-33343022)
chr7 (70-106)||(34270263-34270299)
chr7 (73-108)||(2444049-2444084)
chr7 (215-254)||(45501600-45501639)
chr7 (71-106)||(46290009-46290044)
chr7 (215-257)||(3561873-3561915)
chr7 (70-108)||(24857497-24857535)
chr7 (215-253)||(25709398-25709436)
chr7 (73-115)||(26300573-26300615)
chr7 (215-257)||(39757105-39757147)
chr7 (71-105)||(47120339-47120373)
chr7 (215-252)||(820541-820578)
chr7 (215-252)||(4969914-4969951)
chr7 (70-115)||(5909417-5909462)
chr7 (70-115)||(7170000-7170045)
chr7 (215-252)||(9332102-9332139)
chr7 (71-112)||(27696705-27696746)
chr7 (73-106)||(39757254-39757287)
chr7 (70-107)||(39869120-39869157)
chr7 (74-106)||(3562022-3562054)
chr7 (70-106)||(32117812-32117848)
chr7 (216-252)||(32117956-32117992)
chr7 (216-252)||(33343130-33343166)
chr7 (216-252)||(34270403-34270439)
chr7 (74-106)||(36548604-36548636)
chr7 (216-252)||(46290152-46290188)
[»] chr6 (29 HSPs)
chr6 (70-115)||(24979285-24979330)
chr6 (71-115)||(34692352-34692396)
chr6 (70-115)||(30623323-30623368)
chr6 (70-106)||(18332833-18332869)
chr6 (72-115)||(1814917-1814960)
chr6 (74-115)||(4371840-4371881)
chr6 (70-115)||(6016853-6016898)
chr6 (70-115)||(17596310-17596355)
chr6 (70-107)||(29863446-29863483)
chr6 (70-107)||(31791060-31791097)
chr6 (70-106)||(14228270-14228306)
chr6 (70-106)||(17552731-17552767)
chr6 (70-106)||(33017722-33017758)
chr6 (71-106)||(8977611-8977646)
chr6 (75-106)||(10887031-10887062)
chr6 (215-254)||(10887170-10887209)
chr6 (71-106)||(28943913-28943948)
chr6 (72-106)||(5363037-5363071)
chr6 (215-257)||(34692495-34692537)
chr6 (72-105)||(2086999-2087032)
chr6 (215-252)||(29863302-29863339)
chr6 (216-252)||(3853085-3853121)
chr6 (71-107)||(10345683-10345719)
chr6 (71-107)||(12220548-12220584)
chr6 (216-252)||(14228126-14228162)
chr6 (216-252)||(17552587-17552623)
chr6 (70-106)||(26602575-26602611)
chr6 (216-252)||(28943769-28943805)
chr6 (70-106)||(31568110-31568146)
[»] chr4 (46 HSPs)
chr4 (70-115)||(45742365-45742410)
chr4 (71-115)||(17409822-17409866)
chr4 (71-115)||(23545474-23545518)
chr4 (72-115)||(19468193-19468236)
chr4 (70-115)||(19451036-19451081)
chr4 (70-115)||(27019257-27019302)
chr4 (71-111)||(3085350-3085390)
chr4 (70-115)||(8736946-8736991)
chr4 (70-115)||(16667520-16667565)
chr4 (74-115)||(19838825-19838866)
chr4 (70-106)||(54495782-54495818)
chr4 (215-257)||(4779431-4779473)
chr4 (73-115)||(6875501-6875543)
chr4 (73-111)||(24243029-24243067)
chr4 (215-257)||(47326887-47326929)
chr4 (215-257)||(47341683-47341725)
chr4 (215-252)||(3085811-3085848)
chr4 (70-115)||(9971700-9971745)
chr4 (70-111)||(31955898-31955939)
chr4 (70-115)||(47327028-47327073)
chr4 (70-115)||(47341824-47341869)
chr4 (74-115)||(51691343-51691384)
chr4 (71-115)||(2096869-2096913)
chr4 (71-115)||(24684834-24684878)
chr4 (71-107)||(40049557-40049593)
chr4 (71-115)||(48910970-48911014)
chr4 (70-106)||(50352300-50352336)
chr4 (70-112)||(3726934-3726976)
chr4 (72-106)||(9759286-9759320)
chr4 (74-108)||(16069348-16069382)
chr4 (215-257)||(35999942-35999984)
chr4 (227-257)||(46803952-46803982)
chr4 (219-252)||(4329739-4329772)
chr4 (70-115)||(7349686-7349731)
chr4 (215-252)||(18882267-18882304)
chr4 (219-252)||(27019405-27019438)
chr4 (215-252)||(27362532-27362569)
chr4 (215-252)||(29190816-29190853)
chr4 (74-115)||(33632338-33632379)
chr4 (74-115)||(53376549-53376590)
chr4 (215-252)||(54495637-54495674)
chr4 (215-251)||(16667385-16667421)
chr4 (74-106)||(23553571-23553603)
chr4 (215-251)||(48910803-48910839)
chr4 (70-106)||(49228354-49228390)
chr4 (70-106)||(49332330-49332366)
[»] chr3 (42 HSPs)
chr3 (70-115)||(50204400-50204445)
chr3 (71-115)||(42180050-42180094)
chr3 (73-115)||(54527842-54527884)
chr3 (70-115)||(8165643-8165688)
chr3 (72-121)||(24086983-24087032)
chr3 (70-115)||(51567954-51567999)
chr3 (71-115)||(51618048-51618092)
chr3 (72-115)||(27549537-27549580)
chr3 (70-108)||(51400165-51400203)
chr3 (80-115)||(8497559-8497594)
chr3 (71-106)||(38389445-38389480)
chr3 (70-112)||(26499567-26499609)
chr3 (215-257)||(33474468-33474510)
chr3 (70-115)||(11610912-11610957)
chr3 (70-111)||(40930054-40930095)
chr3 (70-106)||(3863327-3863363)
chr3 (71-106)||(2571267-2571302)
chr3 (71-106)||(12515618-12515653)
chr3 (73-112)||(15664992-15665031)
chr3 (72-107)||(39365275-39365310)
chr3 (73-115)||(35415157-35415199)
chr3 (70-108)||(36426554-36426592)
chr3 (215-253)||(40930192-40930230)
chr3 (82-115)||(2379205-2379238)
chr3 (215-252)||(3863470-3863507)
chr3 (73-106)||(20938057-20938090)
chr3 (227-256)||(20938210-20938239)
chr3 (215-252)||(23523087-23523124)
chr3 (70-115)||(37444144-37444189)
chr3 (215-252)||(38389588-38389625)
chr3 (70-115)||(47386919-47386964)
chr3 (215-252)||(50204544-50204581)
chr3 (215-252)||(51618188-51618225)
chr3 (216-252)||(2571410-2571446)
chr3 (215-251)||(8165787-8165823)
chr3 (216-252)||(10307908-10307944)
chr3 (70-106)||(13495291-13495327)
chr3 (70-111)||(28992917-28992960)
chr3 (215-255)||(35414806-35414846)
chr3 (71-115)||(46845576-46845620)
chr3 (74-106)||(51339328-51339360)
chr3 (219-251)||(54016169-54016201)
[»] chr1 (44 HSPs)
chr1 (70-115)||(3168204-3168249)
chr1 (71-115)||(6180184-6180228)
chr1 (71-115)||(7824994-7825038)
chr1 (70-115)||(13321873-13321918)
chr1 (70-115)||(23591695-23591740)
chr1 (71-115)||(22167333-22167377)
chr1 (71-115)||(35512723-35512767)
chr1 (71-108)||(22331621-22331658)
chr1 (74-115)||(25186840-25186881)
chr1 (70-115)||(38812737-38812782)
chr1 (71-115)||(30171877-30171921)
chr1 (71-115)||(30187418-30187462)
chr1 (70-106)||(34801965-34802001)
chr1 (71-113)||(23808433-23808475)
chr1 (70-116)||(25532206-25532252)
chr1 (215-252)||(13322017-13322054)
chr1 (71-112)||(34050422-34050463)
chr1 (70-115)||(39150462-39150507)
chr1 (70-106)||(1502864-1502900)
chr1 (216-256)||(23591840-23591880)
chr1 (75-115)||(41624832-41624872)
chr1 (70-106)||(51382369-51382405)
chr1 (71-106)||(313748-313783)
chr1 (71-121)||(399552-399602)
chr1 (215-257)||(38812881-38812923)
chr1 (72-106)||(44918024-44918058)
chr1 (215-252)||(313890-313927)
chr1 (215-252)||(6180327-6180364)
chr1 (70-107)||(6307500-6307537)
chr1 (215-252)||(6569985-6570022)
chr1 (70-115)||(6754469-6754514)
chr1 (70-115)||(17919451-17919496)
chr1 (215-252)||(25465299-25465336)
chr1 (215-252)||(30172020-30172057)
chr1 (215-252)||(30187561-30187598)
chr1 (74-115)||(31737669-31737710)
chr1 (215-252)||(34802108-34802145)
chr1 (215-252)||(35512866-35512903)
chr1 (215-252)||(41624970-41625007)
chr1 (227-256)||(51920427-51920456)
chr1 (216-252)||(1502720-1502756)
chr1 (215-251)||(5875216-5875252)
chr1 (216-252)||(23576414-23576450)
chr1 (74-106)||(32716307-32716339)
[»] chr2 (43 HSPs)
chr2 (71-115)||(26003627-26003671)
chr2 (74-115)||(7720116-7720157)
chr2 (70-115)||(16754968-16755013)
chr2 (70-111)||(43806357-43806398)
chr2 (70-115)||(36612867-36612912)
chr2 (70-115)||(36620718-36620763)
chr2 (71-115)||(38148337-38148381)
chr2 (215-254)||(23932706-23932745)
chr2 (215-257)||(5853458-5853500)
chr2 (215-257)||(16493527-16493569)
chr2 (215-257)||(22704678-22704720)
chr2 (70-111)||(29981364-29981405)
chr2 (215-256)||(45062339-45062380)
chr2 (70-106)||(12016664-12016700)
chr2 (71-107)||(15411766-15411802)
chr2 (70-106)||(16126703-16126739)
chr2 (70-106)||(19228423-19228459)
chr2 (71-107)||(23932563-23932599)
chr2 (70-106)||(26229997-26230033)
chr2 (71-115)||(27665179-27665223)
chr2 (71-107)||(35729114-35729150)
chr2 (71-106)||(5583702-5583737)
chr2 (76-115)||(8064842-8064881)
chr2 (71-106)||(10690781-10690816)
chr2 (215-254)||(11660892-11660931)
chr2 (71-106)||(16919298-16919333)
chr2 (71-106)||(22705453-22705488)
chr2 (71-106)||(39904192-39904227)
chr2 (215-257)||(15231972-15232014)
chr2 (215-252)||(6109530-6109567)
chr2 (215-252)||(8065264-8065301)
chr2 (215-252)||(12016807-12016844)
chr2 (74-107)||(12919495-12919528)
chr2 (215-252)||(16126559-16126596)
chr2 (70-107)||(29795055-29795092)
chr2 (215-252)||(43388481-43388518)
chr2 (70-115)||(43388902-43388947)
chr2 (216-252)||(4576326-4576362)
chr2 (71-115)||(14377423-14377467)
chr2 (71-107)||(20566161-20566197)
chr2 (216-252)||(24729577-24729613)
chr2 (216-252)||(29157829-29157865)
chr2 (216-252)||(38248420-38248456)
[»] scaffold0129 (1 HSPs)
scaffold0129 (71-115)||(13794-13838)
[»] scaffold0036 (2 HSPs)
scaffold0036 (215-256)||(94014-94055)
scaffold0036 (74-115)||(94154-94195)
[»] scaffold0028 (1 HSPs)
scaffold0028 (70-115)||(31836-31881)
[»] scaffold0111 (2 HSPs)
scaffold0111 (71-106)||(37259-37294)
scaffold0111 (215-252)||(37114-37151)
[»] scaffold0061 (2 HSPs)
scaffold0061 (70-106)||(52923-52959)
scaffold0061 (215-252)||(52779-52816)
[»] scaffold0017 (2 HSPs)
scaffold0017 (70-106)||(145675-145711)
scaffold0017 (215-252)||(145818-145855)
[»] scaffold0631 (1 HSPs)
scaffold0631 (74-115)||(443-484)
[»] scaffold0011 (2 HSPs)
scaffold0011 (215-252)||(13226-13263)
scaffold0011 (70-106)||(13083-13119)
[»] scaffold0009 (1 HSPs)
scaffold0009 (73-106)||(193377-193410)
[»] scaffold0007 (1 HSPs)
scaffold0007 (224-253)||(2447-2476)
[»] scaffold0727 (1 HSPs)
scaffold0727 (74-106)||(5692-5724)
[»] scaffold0305 (1 HSPs)
scaffold0305 (73-101)||(17951-17979)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 265 - 441
Target Start/End: Complemental strand, 16883567 - 16883393
Alignment:
Q  265 gctgaaatcaaattcagttaacacatgttgcatatgctgagattgaacaagttgtatgcaggaaagaattgtccgcagttttttgaataagtatttttgt 364  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16883567 gctgaaatcaaattcagttaacac--gttgcatatgctgagatcgaacaagttgtatgcaggaaagaattgtccgcagttttttgaataagtatttttgt 16883470  T
Q  365 gcataaaacattacacaaatttacagtaattatcacaactcaaccctccacaagttgagctaccattgctgaaaaaa 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16883469 gcataaaacattacacaaatttacagtaattatcacaactcaaccctccacaagttgagctaccattgctgaaaaaa 16883393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 16883844 - 16883747
Alignment:
Q  17 cagagactgtaaaggatgtctgcaagtacaagttgcagatatgttatattagcagggtttgtctaacatgtgcaacattgcacatgttaaaacaacta 114  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16883844 cagagactgtaaaggatgtctgcaagtacaagttgcagataagttatattagtagggtttgtctaacatgtgcaacattgcacatgttaaaacaacta 16883747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 3398218 - 3398262
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3398218 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 3398262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 18841885 - 18841841
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18841885 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 18841841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 24014866 - 24014823
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24014866 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 24014823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 29856048 - 29856005
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  29856048 ggtttctctaacatgtgcaacattgcacatgttaaaacaactaa 29856005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 3738052 - 3738011
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  3738052 tttgtctaatatgtgcaacattgcacatgttaaaacaactaa 3738011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 26376750 - 26376709
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  26376750 agggtttgtctaacatgtgcaacattgtacatgttaaaacaa 26376709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 16883632 - 16883588
Alignment:
Q  220 taaaatatgcaaatttgcacatgatagaaaaactcatagtagtat 264  Q
    |||||| |||||||||| |||||||||||||||||||||||||||    
T  16883632 taaaatgtgcaaatttgtacatgatagaaaaactcatagtagtat 16883588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 2795508 - 2795557
Alignment:
Q  57 atgttatattagcagggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||| ||||||  |||||||||||||||||||||| ||||||||||||||    
T  2795508 atgtaatattaaaagggtttgtctaacatgtgcaatattgcacatgttaa 2795557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 11250137 - 11250092
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||    
T  11250137 agggtttgtttaacatgtgcaatattgcacatgttaaagcaactaa 11250092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 11636729 - 11636766
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| |||||||||||||||    
T  11636729 agggtttgtctaacatgtgcaatattgcacatgttaaa 11636766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 30328507 - 30328462
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||    
T  30328507 agggtttgtctaacatgtgcaatattgcacatgttaagataactaa 30328462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 14466670 - 14466634
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  14466670 agggtttgtctaacatgtgcaatattgcacatgttaa 14466634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 30839779 - 30839815
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30839779 agggtttgtctaacatgtgcaatattgcacatgttaa 30839815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 31366132 - 31366096
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31366132 agggtttgtctaacatgtgcaatattgcacatgttaa 31366096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 36597577 - 36597613
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  36597577 agggtttgtctaacatgtgcaatattgcacatgttaa 36597613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 40166250 - 40166294
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||| |  |||||||||||||||||||||||    
T  40166250 gggtttgtctaacatgtggagtattgcacatgttaaaacaactaa 40166294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 2795664 - 2795706
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  2795664 cttcttaacatgtgcaaatttgcacatgatagaaaaacccata 2795706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 32020020 - 32019982
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaactc 254  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  32020020 ttcttaacatgtgcaaatttgcacatgatagaaaaactc 32019982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 33072677 - 33072719
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||| |||||||||||| ||||||||||||||| |||||||    
T  33072677 gtttgtttaacatgtgcaatattgcacatgttaaatcaactaa 33072719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 39043150 - 39043192
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||    
T  39043150 gtttatctaacatgtgcaccattgcatatgttaaaacaactaa 39043192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 40512951 - 40512985
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||| ||||||||||||||    
T  40512951 ggtttgtctaacatgtgcaatattgcacatgttaa 40512985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 3398361 - 3398398
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  3398361 cttcttaacatgtgcaaatttgcacatgatagaaaaac 3398398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 4047553 - 4047590
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  4047553 cttcttaacatgtgcaaatttgcacatgatagaaaaac 4047590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 5958304 - 5958267
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  5958304 agggtttgtctaacatgtgcaatattacacatgttaaa 5958267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 11692808 - 11692767
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||| ||| |||||||||||||||| ||||||    
T  11692808 tttgtctaacatgtacaatattgcacatgttaaaataactaa 11692767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 18150376 - 18150413
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  18150376 agggtttgtctaacatgtgcaatattgcatatgttaaa 18150413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 8103755 - 8103715
Alignment:
Q  75 ttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||| ||||||||||||||  |||||||    
T  8103755 ttgtctaacatgtgcaatattgcacatgttaaggcaactaa 8103715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 12642030 - 12641990
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactca 255  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  12642030 cttcttaacatgtgcaaatttgcacattatagaaaaactca 12641990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 15241272 - 15241236
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  15241272 gggtttgtctaacatatgcaatattgcacatgttaaa 15241236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 16160889 - 16160933
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||  |||||||| || |||||||||||||||||||||||    
T  16160889 gggtttgtaaaacatgtgtaatattgcacatgttaaaacaactaa 16160933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 26265226 - 26265182
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||  ||||||| | ||||||||||||||||    
T  26265226 gggtttgtctaacatgtttaacattgtatatgttaaaacaactaa 26265182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 30839923 - 30839959
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  30839923 ttcttaacatgtgcaaatttgcacatgatagaaaaac 30839959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 34333211 - 34333183
Alignment:
Q  224 atatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||||||||||||||||||||||||    
T  34333211 atatgcaaatttgcacatgatagaaaaac 34333183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 36597721 - 36597757
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  36597721 ttcttaacatgtgcaaatttgcacatgatagaaaaac 36597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 57)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 38843701 - 38843746
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38843701 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 38843746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 45005968 - 45006012
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45005968 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 45006012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 38213131 - 38213081
Alignment:
Q  65 ttagcagggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  38213131 ttagaagggtttgtttaacatgtgcaacattgcacatgttaaaacaactaa 38213081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 9580289 - 9580245
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  9580289 gggtttgtctaatatgtgcaacattgcacatgttaaaacaactaa 9580245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 7750667 - 7750710
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  7750667 ggtttgtctaacatgtgcaatattgcacatgttaaaacaactaa 7750710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 26682068 - 26682110
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  26682068 gtttgtctaacatgtgcaatattgcacatgttaaaacaactaa 26682110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 36967251 - 36967206
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  36967251 agggtttgtctaacatgtgcaacattgtacatgttaagacaactaa 36967206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 11117177 - 11117133
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  11117177 gggtttgtctaacatgtgcaatattgcacatgttaaagcaactaa 11117133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 12131981 - 12132017
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||||||||||||||||||    
T  12131981 gggtttgtctaacatgtgcaacattgcacatgttaaa 12132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 12189768 - 12189724
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  12189768 gggtttgtttaacatgtgcagcattgcacatgttaaaacaactaa 12189724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 12434196 - 12434152
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  12434196 gggtttgtttaacatgtgcagcattgcacatgttaaaacaactaa 12434152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 31812111 - 31812146
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||||||||||||||||||    
T  31812111 gggtttgtctaacatgtgcaacattgcacatgttaa 31812146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 34869701 - 34869658
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||| ||||||||||||||||||| |||||||||||||||    
T  34869701 ggtttgtcaaacatgtgcaacattgcacgtgttaaaacaactaa 34869658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 11923013 - 11923055
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaact 113  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  11923013 gggtttgtctaacatgtgcaatattgcacaagttaaaacaact 11923055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 40226024 - 40225982
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  40226024 cttcttaacatgtgcaaatttgcacatgatagaaaaactcata 40225982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 2161376 - 2161421
Alignment:
Q  61 tatattagcagggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||    
T  2161376 tatattaaaagggtttgtctaacatgtgcaatattgcacatgttaa 2161421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 5912024 - 5911983
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  5912024 tttgtctaacatgtgcaacattgctcatattaaaacaactaa 5911983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 11977318 - 11977281
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaaca 110  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  11977318 gtttgtctaacatgtgcaacattacacatgttaaaaca 11977281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 14816306 - 14816269
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| |||||||||||||||    
T  14816306 agggtttgtctaacatgtgcaatattgcacatgttaaa 14816269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 14829434 - 14829471
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| |||||||||||||||    
T  14829434 agggtttgtctaacatgtgcaatattgcacatgttaaa 14829471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 23840237 - 23840274
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  23840237 tttgtctaacatgtgcaacatggcacatgttaaaacaa 23840274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 33430290 - 33430249
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  33430290 tttgtctaacatgttcaacattgcacatattaaaacaactaa 33430249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 38212981 - 38212940
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcat 256  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  38212981 cttcttaacatgtgcaaatttgcacatgatagaaaaactcat 38212940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 3306235 - 3306199
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  3306235 agggtttgtctaacatgtgcaatattgcacatgttaa 3306199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 8284749 - 8284705
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||    
T  8284749 gggtttgtctaacatgtgcagtattgcacatgttaaagcaactaa 8284705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 13496912 - 13496876
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    ||||||||||||||||||||| |||||||||||||||    
T  13496912 gggtttgtctaacatgtgcaatattgcacatgttaaa 13496876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 26834703 - 26834739
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26834703 ttcttaatatatgcaaatttgcacatgatagaaaaac 26834739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 32186184 - 32186228
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||    
T  32186184 gggtttgtttaacatgagcaacattgcaaatgttaaaacaactaa 32186228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 38527819 - 38527863
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||    
T  38527819 gggtttgtctaacatgtgcaatattgcacatgttaaggcaactaa 38527863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 43717732 - 43717688
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||  |||||||||||||| |||||||    
T  43717732 gggtttgtctaacatgtgcaatgttgcacatgttaaagcaactaa 43717688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 7140638 - 7140603
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7140638 gggtttgtctaacatgtgcaatattgcacatgttaa 7140603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 10129102 - 10129137
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10129102 gggtttgtctaacatgtgcaatattgcacatgttaa 10129137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 12346006 - 12346044
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  12346006 gtttgtctgacatgtgcaacattacacatgttaaaacaa 12346044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 35678452 - 35678418
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    ||||||||||||||||||| |||||||||||||||    
T  35678452 gtttgtctaacatgtgcaatattgcacatgttaaa 35678418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 37523758 - 37523800
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||    
T  37523758 gtttgtctaacatgtacaatattgcacatgttaaaacagctaa 37523800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 2161529 - 2161570
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    ||||||| || |||||||||||||||||||||||||| ||||    
T  2161529 ttcttaacatgtgcaaatttgcacatgatagaaaaacccata 2161570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 7140496 - 7140459
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  7140496 cttcttaatatgtgcaaatttgcacatgatagaaaaac 7140459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 10129244 - 10129281
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  10129244 cttcttaacatgtgcaaatttgcacatgatagaaaaac 10129281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 11947076 - 11947035
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||| ||| |||||||| ||||||||||||||    
T  11947076 tttgtctaacatgtacaatattgcacaagttaaaacaactaa 11947035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 13496746 - 13496709
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  13496746 cttcttaacatgtgcaaatttgcacatgatagaaaaac 13496709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 18567453 - 18567416
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  18567453 cttcttaacatgtgcaaatttgcacatgatagaaaaac 18567416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 22838366 - 22838403
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  22838366 cttcttaacatgtgcaaatttgcacatgatagaaaaac 22838403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 27874718 - 27874681
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  27874718 cttcttaacatgtgcaaatttgcacatgatagaaaaac 27874681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 28014895 - 28014858
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  28014895 cttcttaacatgtgcaaatttgcacatgatagaaaaac 28014858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 31812254 - 31812291
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  31812254 cttcttaatatgtgcaaatttgcacatgatagaaaaac 31812291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 3306091 - 3306055
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  3306091 ttcttaacatgtgcaaatttgcacatgatagaaaaac 3306055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 13327978 - 13327942
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaa 251  Q
    |||||||| || |||||||||||||||||||||||||    
T  13327978 cttcttaacatgtgcaaatttgcacatgatagaaaaa 13327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 13328121 - 13328085
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| |||||| |||||||    
T  13328121 agggtttgtctaacatgtgcaatattgcatatgttaa 13328085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 19344017 - 19343981
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  19344017 agggtttgtcttacatgtgcaatattgcacatgttaa 19343981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 26682210 - 26682246
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  26682210 ttcttaacatgtgcaaatttgcacatgatagaaaaac 26682246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 26834558 - 26834590
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatg 102  Q
    |||||||||||||||| ||||||||||||||||    
T  26834558 agggtttgtctaacatatgcaacattgcacatg 26834590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 28866968 - 28866932
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaa 251  Q
    |||||||| |||| |||||||||||||||||||||||    
T  28866968 cttcttaatatatacaaatttgcacatgatagaaaaa 28866932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 29642753 - 29642781
Alignment:
Q  224 atatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||||||||||||||||||||||||    
T  29642753 atatgcaaatttgcacatgatagaaaaac 29642781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 33514681 - 33514645
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  33514681 agggtttgcctaacatgtgcaatattgcacatgttaa 33514645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 39701979 - 39701947
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||| ||||||||||||||    
T  39701979 tttgtctaacatgtgcaatattgcacatgttaa 39701947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 40211001 - 40210965
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| |||||| |||||||    
T  40211001 agggtttgtctaacatgtgcaatattgcatatgttaa 40210965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 40716272 - 40716308
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  40716272 agggtttatctaacatgtgcaatattgcacatgttaa 40716308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 4969770 - 4969815
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4969770 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 4969815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 29398295 - 29398250
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29398295 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 29398250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 29692720 - 29692676
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  29692720 gggtttgtctaacatgtgcatcattgcacatgttaaaacaactaa 29692676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 45501457 - 45501501
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  45501457 gggtttgtctaacatgtgcaacattgcacatgttaaaataactaa 45501501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 39475853 - 39475890
Alignment:
Q  78 tctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39475853 tctaacatgtgcaacattgcacatgttaaaacaactaa 39475890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 47457638 - 47457597
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  47457638 tttgtctaacatgtgcaatattgcacatgttaaaacaactaa 47457597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 19868114 - 19868156
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  19868114 gtttgtctaacatgtgcaatattgcacatgttaagacaactaa 19868156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 19889338 - 19889383
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||    
T  19889338 agggtttgtctaacatgtgcaatattgcacatgttaaggcaactaa 19889383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 820713 - 820673
Alignment:
Q  75 ttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  820713 ttgtctaacatgtgcaacattactcatgttaaaacaactaa 820673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 9331959 - 9331995
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9331959 agggtttgtctaacatgtgcaatattgcacatgttaa 9331995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 24250311 - 24250347
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  24250311 agggtttgtctaacatgtgcaatattgcacatgttaa 24250347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 33342986 - 33343022
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  33342986 agggtttgtctaacatgtgcaatattgcacatgttaa 33343022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 34270263 - 34270299
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34270263 agggtttgtctaacatgtgcaatattgcacatgttaa 34270299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 2444084 - 2444049
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaa 108  Q
    |||||||||||||||||||||||||| |||||||||    
T  2444084 gtttgtctaacatgtgcaacattgcatatgttaaaa 2444049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 45501600 - 45501639
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactc 254  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  45501600 cttcttaagatgtgcaaatttgcacatgatagaaaaactc 45501639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 46290009 - 46290044
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  46290009 gggtttgtctaacatgtgcaaaattgcacatgttaa 46290044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 3561915 - 3561873
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  3561915 cttcttaacatgtgcaaatttgcacatgatagaaaaacccata 3561873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 24857497 - 24857535
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaa 108  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  24857497 agggtttgtctaacatgtgcaatattgcacatgataaaa 24857535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 25709436 - 25709398
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaact 253  Q
    |||||||| || |||||||||||||||||||||||||||    
T  25709436 cttcttaacatgtgcaaatttgcacatgatagaaaaact 25709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 26300573 - 26300615
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||| || |||||| ||||||||||||||||    
T  26300573 gtttgtctaacatgtgtaatattgcatatgttaaaacaactaa 26300615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 39757147 - 39757105
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  39757147 cttcttaacatgtgcaaatttgcacatgatagaaaaacccata 39757105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 47120373 - 47120339
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgtta 105  Q
    ||||||||||||||||||||| |||||||||||||    
T  47120373 gggtttgtctaacatgtgcaatattgcacatgtta 47120339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 820578 - 820541
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  820578 cttcttaacatgtgcaaatttgcacatgatagaaaaac 820541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 4969914 - 4969951
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  4969914 cttcttaacatgtgcaaatttgcacatgatagaaaaac 4969951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 5909462 - 5909417
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||| ||||||||||||| ||||||||||||||  |||||||    
T  5909462 agggtttgactaacatgtgcaatattgcacatgttaaggcaactaa 5909417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 7170000 - 7170045
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||| ||||||||||||||||| ||||||||||||||  |||||||    
T  7170000 agggattgtctaacatgtgcaatattgcacatgttaaggcaactaa 7170045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 9332102 - 9332139
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  9332102 cttcttaacatgtgcaaatttgcacatgatagaaaaac 9332139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 27696705 - 27696746
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaac 112  Q
    |||||||||||||||||| || ||||||||||||||| ||||    
T  27696705 gggtttgtctaacatgtggaatattgcacatgttaaagcaac 27696746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 39757287 - 39757254
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||| ||||||||||||||    
T  39757287 gtttgtctaacatgtgcaatattgcacatgttaa 39757254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 39869120 - 39869157
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  39869120 agggtttgtctaacatatgcaatattgcacatgttaaa 39869157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 3562054 - 3562022
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||| ||||||||||||||    
T  3562054 tttgtctaacatgtgcaatattgcacatgttaa 3562022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 32117812 - 32117848
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  32117812 agggtttatctaacatgtgcaatattgcacatgttaa 32117848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 32117956 - 32117992
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  32117956 ttcttaacatgtgcaaatttgcacatgatagaaaaac 32117992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 33343130 - 33343166
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  33343130 ttcttaacatgtgcaaatttgcacatgatagaaaaac 33343166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 34270403 - 34270439
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  34270403 ttcttaacatgtgcaaatttgcacatgatagaaaaac 34270439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 36548636 - 36548604
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||| ||||||||||||||    
T  36548636 tttgtctaacatgtgcaatattgcacatgttaa 36548604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 46290152 - 46290188
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  46290152 ttcttaacatgtgcaaatttgcacatgatagaaaaac 46290188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 24979330 - 24979285
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24979330 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 24979285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 34692352 - 34692396
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34692352 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 34692396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 30623323 - 30623368
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  30623323 agggtttgtctaacatgtgcaacattacacatgttaaaacaactaa 30623368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 18332869 - 18332833
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||||||||||||||||||    
T  18332869 agggtttgtctaacatgtgcaacattgcacatgttaa 18332833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 1814960 - 1814917
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  1814960 ggtttgtctaacatgtgcaatattgcacatgttaaagcaactaa 1814917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 4371840 - 4371881
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  4371840 tttgtctaatatgtgcaacattgtacatgttaaaacaactaa 4371881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 6016853 - 6016898
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  6016853 agggtttgtctaacatgtgcaacattgcacatggtaagacatctaa 6016898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 17596310 - 17596355
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||    
T  17596310 agggattgtctaacatgtgcaatattgcacatgttaagacaactaa 17596355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 29863483 - 29863446
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| |||||||||||||||    
T  29863483 agggtttgtctaacatgtgcaatattgcacatgttaaa 29863446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 31791097 - 31791060
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| |||||||||||||||    
T  31791097 agggtttgtctaacatgtgcaatattgcacatgttaaa 31791060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 14228306 - 14228270
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  14228306 agggtttgtctaacatgtgcaatattgcacatgttaa 14228270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 17552767 - 17552731
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17552767 agggtttgtctaacatgtgcaatattgcacatgttaa 17552731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 33017722 - 33017758
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  33017722 agggtttgtctaacatgtgcaatattgcacatgttaa 33017758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 8977646 - 8977611
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8977646 gggtttgtctaacatgtgcaatattgcacatgttaa 8977611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 106
Target Start/End: Original strand, 10887031 - 10887062
Alignment:
Q  75 ttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||||||||||||||    
T  10887031 ttgtctaacatgtgcaacattgcacatgttaa 10887062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 10887170 - 10887209
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactc 254  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  10887170 cttcttaacatgtgcaaatttgcacatgatagaaaaactc 10887209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 28943948 - 28943913
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  28943948 gggtttgtctaacatgtgcaatattgcacatgttaa 28943913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 5363071 - 5363037
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||| ||||||||||||||    
T  5363071 ggtttgtctaacatgtgcaatattgcacatgttaa 5363037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 34692495 - 34692537
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  34692495 cttcttaacatgtgcaaatttgcacatgatagaaaaacccata 34692537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 2087032 - 2086999
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgtta 105  Q
    |||||||||||||||||||| |||||||||||||    
T  2087032 ggtttgtctaacatgtgcaatattgcacatgtta 2086999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 29863339 - 29863302
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  29863339 cttcttaacatgtgcaaatttgcacatgatagaaaaac 29863302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 3853085 - 3853121
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  3853085 ttcttaacatgtgcaaatttgcacatgatagaaaaac 3853121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 10345719 - 10345683
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||| |||||||||||||||| |||||||||||||||    
T  10345719 gggtctgtctaacatgtgcaatattgcacatgttaaa 10345683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 12220548 - 12220584
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  12220548 gggtttgtctagcatttgcaacattgcacatgttaaa 12220584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 14228162 - 14228126
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14228162 ttcttaacatgtgcaaatttgcacatgatagaaaaac 14228126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 17552623 - 17552587
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  17552623 ttcttaacatgtgcaaatttgcacatgatagaaaaac 17552587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 26602611 - 26602575
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  26602611 agggtttgtctaacatgtgcaatattgcacatattaa 26602575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 28943805 - 28943769
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  28943805 ttcttaacatgtgcaaatttgcacatgatagaaaaac 28943769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 31568110 - 31568146
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  31568110 agggtttgtctaacacgtgcaatattgcacatgttaa 31568146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 45742365 - 45742410
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45742365 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 45742410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 17409822 - 17409866
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17409822 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 17409866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 23545474 - 23545518
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23545474 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 23545518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 19468193 - 19468236
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19468193 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 19468236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 19451081 - 19451036
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  19451081 aggggttgtctaacatgtgcaacattgcacatgttaaaacaactaa 19451036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 27019257 - 27019302
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  27019257 agggtttgtctaacgtgtgcaacattgcacatgttaaaacaactaa 27019302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 3085350 - 3085390
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3085350 gggtttgtctaacatgtgcaacattgcacatgttaaaacaa 3085390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 8736991 - 8736946
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  8736991 agggtttgtctaacatgtgcaacattgcacatgttaagacatctaa 8736946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 16667565 - 16667520
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  16667565 agggtttgtctaacatgtgcaacattgcacatgttaagacatctaa 16667520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 19838866 - 19838825
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  19838866 tttgtctaacatgtggaacattgcacatgttaaaacaactaa 19838825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 54495818 - 54495782
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||||||||||||||||||    
T  54495818 agggtttgtctaacatgtgcaacattgcacatgttaa 54495782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 4779473 - 4779431
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  4779473 cttcttaacatgtgcaaatttgcacatgatagaaaaactcata 4779431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 6875501 - 6875543
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  6875501 gtttgtctaacatttgcaatattgcacatgttaaaacaactaa 6875543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 24243067 - 24243029
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  24243067 gtttgtctaacatgtgcaacattacacatgttaaaacaa 24243029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 47326929 - 47326887
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  47326929 cttcttaacatgtgcaaatttgcacatgatagaaaaactcata 47326887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 47341725 - 47341683
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  47341725 cttcttaacatgtgcaaatttgcacatgatagaaaaactcata 47341683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 3085811 - 3085848
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3085811 cttcttaaaatgtgcaaatttgcacatgatagaaaaac 3085848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 9971745 - 9971700
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||    
T  9971745 agggtttgtctaacatgtgcaatattgcacatgttacagcaactaa 9971700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 31955939 - 31955898
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  31955939 agggtttgtctaacatgtccaacattgaacatgttaaaacaa 31955898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 47327073 - 47327028
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||    
T  47327073 agggtttgtctaacctgtgcaacattgcacatgttaagacatctaa 47327028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 47341869 - 47341824
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||    
T  47341869 agggtttgtctaacctgtgcaacattgcacatgttaagacatctaa 47341824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 51691343 - 51691384
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  51691343 tttgtctaaaatgtgcaacattgcacatgttaaagcaactaa 51691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 2096869 - 2096913
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||    
T  2096869 gggtttgtctaacatgtgcaatattgcacaagttaaatcaactaa 2096913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 24684834 - 24684878
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||    
T  24684834 gggtttgtttaacatttgcaacattacacatgttaaaacaactaa 24684878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 40049557 - 40049593
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    ||||||||||||||||||||| |||||||||||||||    
T  40049557 gggtttgtctaacatgtgcaatattgcacatgttaaa 40049593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 48911014 - 48910970
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||    
T  48911014 gggtttgtctaacatgtgcaatattgcacatgttaagataactaa 48910970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 50352300 - 50352336
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  50352300 agggtttgtctaacatgtgcaatattgcacatgttaa 50352336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 3726934 - 3726976
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaac 112  Q
    ||||||||||| |||||||||| |||||||||||||| |||||    
T  3726934 agggtttgtcttacatgtgcaatattgcacatgttaacacaac 3726976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 9759320 - 9759286
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||| ||||||||||||||    
T  9759320 ggtttgtctaacatgtgcaatattgcacatgttaa 9759286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 16069382 - 16069348
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaa 108  Q
    ||||||||||||||||||||||||||| |||||||    
T  16069382 tttgtctaacatgtgcaacattgcacacgttaaaa 16069348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 35999984 - 35999942
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  35999984 cttcttaacatgtgcaaatttgcacatgatagaaaaacccata 35999942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 46803952 - 46803982
Alignment:
Q  227 tgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||||||||||||||||||||||||||    
T  46803952 tgcaaatttgcacatgatagaaaaactcata 46803982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 4329739 - 4329772
Alignment:
Q  219 ttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||| |||||||||||||||||||||||||||||    
T  4329739 ttaacatatgcaaatttgcacatgatagaaaaac 4329772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 7349686 - 7349731
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||| |||||| ||||||||||||||  |||||||    
T  7349686 agggtttgtctaacacgtgcaatattgcacatgttaaggcaactaa 7349731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 18882304 - 18882267
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  18882304 cttcttaacatgtgcaaatttgcacatgatagaaaaac 18882267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 27019405 - 27019438
Alignment:
Q  219 ttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||| |||||||||||||||||||||||||||||    
T  27019405 ttaacatatgcaaatttgcacatgatagaaaaac 27019438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 27362532 - 27362569
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  27362532 cttcttaacatgtgcaaatttgcacatgatagaaaaac 27362569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 29190853 - 29190816
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  29190853 cttcttaacatgtgcaaatttgcacatgatagaaaaac 29190816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 33632379 - 33632338
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||  |||||| |||||||||||    
T  33632379 tttgtctaacatgtgcaacattatacatgtaaaaacaactaa 33632338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 53376590 - 53376549
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||| |||||||| |||||||||||||||| ||||||    
T  53376590 tttgtctaagatgtgcaatattgcacatgttaaaagaactaa 53376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 54495674 - 54495637
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  54495674 cttcttaacatgtgcaaatttgcacatgatagaaaaac 54495637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 16667421 - 16667385
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaa 251  Q
    |||||||| || |||||||||||||||||||||||||    
T  16667421 cttcttaacatgtgcaaatttgcacatgatagaaaaa 16667385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 23553571 - 23553603
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||| ||||||||||||||    
T  23553571 tttgtctaacatgtgcaatattgcacatgttaa 23553603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 48910839 - 48910803
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaa 251  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  48910839 cttcttaacatatgcaaatttgcatatgatagaaaaa 48910803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 49228354 - 49228390
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| |||||| |||||||    
T  49228354 agggtttgtctaacatgtgcaatattgcatatgttaa 49228390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 49332330 - 49332366
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  49332330 agggtttgtctaacatgtgcaatatttcacatgttaa 49332366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 50204400 - 50204445
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50204400 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 50204445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 42180050 - 42180094
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42180050 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 42180094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 54527884 - 54527842
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54527884 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 54527842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 8165643 - 8165688
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  8165643 agggtttgtctaacatgtgcaacattgcacattttaaaacaactaa 8165688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 24086983 - 24087032
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaaccgtag 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24086983 ggtttgtctaacatgtgcaacattgcacatcttaaaacaactaacagtag 24087032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 51567999 - 51567954
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  51567999 agggtttgtctaacatgcgcaacattgcacatgttaaaacaactaa 51567954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 51618048 - 51618092
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  51618048 gggtttgtctaacatgtgcaatattgcacatgttaaaacaactaa 51618092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 27549537 - 27549580
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  27549537 ggtttgtctaatatgtgcaacattgcacatgttaaaacaactaa 27549580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 51400165 - 51400203
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51400165 agggtttgtctaacatgtgcaacattgcacatgttaaaa 51400203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 8497594 - 8497559
Alignment:
Q  80 taacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||    
T  8497594 taacatgtgcaacattgcacatgttaaaacaactaa 8497559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 38389445 - 38389480
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||||||||||||||||||    
T  38389445 gggtttgtctaacatgtgcaacattgcacatgttaa 38389480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 26499567 - 26499609
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaac 112  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  26499567 agggtttatctaacatgtgcaacattgcatatgttaaaacaac 26499609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 33474510 - 33474468
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  33474510 cttcttaacatgtgcaaatttgcacatgatagaaaaactcata 33474468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 11610912 - 11610957
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||    
T  11610912 agggtttgtctaacatgtgcaatattgcacatgttaaggcaactaa 11610957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 40930054 - 40930095
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  40930054 agggtttgtctaacatgcgcaaaattgcacatgttaaaacaa 40930095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 3863327 - 3863363
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  3863327 agggtttgtctaacatgtgcaatattgcacatgttaa 3863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 2571267 - 2571302
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  2571267 gggtttgtctaacatgtgcaatattgcacatgttaa 2571302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 12515653 - 12515618
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  12515653 gggtttgtctaacatgtgcaatattgcacatgttaa 12515618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 15665031 - 15664992
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaac 112  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  15665031 gtttgtctaacatgtgcaacatagcacgtgttaaaacaac 15664992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 39365310 - 39365275
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||| |||||||||||||||    
T  39365310 ggtttgtctaacatgtgcaatattgcacatgttaaa 39365275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 35415199 - 35415157
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||| |||||||||||||  |||||||||||||||||||||||    
T  35415199 gtttatctaacatgtgcattattgcacatgttaaaacaactaa 35415157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 36426592 - 36426554
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaa 108  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  36426592 agggtttttctatcatgtgcaacattgcacatgttaaaa 36426554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 40930192 - 40930230
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaact 253  Q
    |||||||| || |||||||||||||||||||||||||||    
T  40930192 cttcttaacatgtgcaaatttgcacatgatagaaaaact 40930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 2379238 - 2379205
Alignment:
Q  82 acatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||| |||||||||||||||||||||||    
T  2379238 acatgtgcaatattgcacatgttaaaacaactaa 2379205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 3863470 - 3863507
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  3863470 cttcttaacatgtgcaaatttgcacatgatagaaaaac 3863507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 20938057 - 20938090
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||| ||||||||||||||    
T  20938057 gtttgtctaacatgtgcaatattgcacatgttaa 20938090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 20938210 - 20938239
Alignment:
Q  227 tgcaaatttgcacatgatagaaaaactcat 256  Q
    ||||||||||||||||||||||||||||||    
T  20938210 tgcaaatttgcacatgatagaaaaactcat 20938239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 23523087 - 23523124
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  23523087 cttcttaacatgtgcaaatttgcacatgatagaaaaac 23523124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 37444144 - 37444189
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||| ||||||||||||||||| ||||||||||||||  |||||||    
T  37444144 agggattgtctaacatgtgcaatattgcacatgttaaggcaactaa 37444189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 38389588 - 38389625
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  38389588 cttcttaacatgtgcaaatttgcacatgatagaaaaac 38389625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 47386919 - 47386964
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||| ||||| ||| ||||| |||||||    
T  47386919 agggtttgtctaacatgtgcaatattgcgcatattaaagcaactaa 47386964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 50204544 - 50204581
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  50204544 cttcttaacatgtgcaaatttgcacatgatagaaaaac 50204581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 51618188 - 51618225
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  51618188 cttcttaacatgtgcaaatttgcacatgatagaaaaac 51618225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 2571410 - 2571446
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  2571410 ttcttaacatgtgcaaatttgcacatgatagaaaaac 2571446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 8165787 - 8165823
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaa 251  Q
    |||||||| || |||||||||||||||||||||||||    
T  8165787 cttcttaacatgtgcaaatttgcacatgatagaaaaa 8165823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 10307908 - 10307944
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  10307908 ttcttaacatgtgcaaatttgcacatgatagaaaaac 10307944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 13495291 - 13495327
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||||  |||||||||||||    
T  13495291 agggtttgtctaacatgtgcaaatttgcacatgttaa 13495327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 28992960 - 28992917
Alignment:
Q  70 agggtttgtctaacatgtgca--acattgcacatgttaaaacaa 111  Q
    |||||||||||||||||||||  | |||||||||||||||||||    
T  28992960 agggtttgtctaacatgtgcaatatattgcacatgttaaaacaa 28992917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 35414846 - 35414806
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactca 255  Q
    |||||||| || || ||||||||||||||||||||||||||    
T  35414846 cttcttaacatgtgtaaatttgcacatgatagaaaaactca 35414806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 46845620 - 46845576
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||| |||||||| ||||||||| ||||| |||||||    
T  46845620 gggtttgtctaatatgtgcaatattgcacatcttaaagcaactaa 46845576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 51339360 - 51339328
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||| ||||||||||||||    
T  51339360 tttgtctaacatgtgcaatattgcacatgttaa 51339328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 54016201 - 54016169
Alignment:
Q  219 ttaaaatatgcaaatttgcacatgatagaaaaa 251  Q
    ||||||| |||||||||||||||||||||||||    
T  54016201 ttaaaatgtgcaaatttgcacatgatagaaaaa 54016169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 3168249 - 3168204
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3168249 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 3168204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 6180184 - 6180228
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6180184 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 6180228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 7825038 - 7824994
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7825038 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 7824994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 13321873 - 13321918
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13321873 agggtttgtctaacatgtgcaacattgtacatgttaaaacaactaa 13321918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 23591695 - 23591740
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  23591695 agggtttgtctaacatgtgcaacattgcacatgttaaagcaactaa 23591740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 22167333 - 22167377
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  22167333 gggtttgtctaccatgtgcaacattgcacatgttaaaacaactaa 22167377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 35512723 - 35512767
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  35512723 gggtttgtctaacatgtgcaacattgcaaatgttaaaacaactaa 35512767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 22331621 - 22331658
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22331621 gggtttgtctaacatgtgcaacattgcacatgttaaaa 22331658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 25186840 - 25186881
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  25186840 tttgtctaatatgtgcaacattgcacatgttaaaacaactaa 25186881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 38812737 - 38812782
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  38812737 agggtttgtttaacatgtgcaacattgtacatgttaaaacaactaa 38812782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 30171877 - 30171921
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  30171877 gggtttgtctaacatgtgcaacattgcacatgttaagacatctaa 30171921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 30187418 - 30187462
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  30187418 gggtttgtctaacatgtgcaacattgcacatgttaagacatctaa 30187462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 34801965 - 34802001
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||||||||||||||||||    
T  34801965 agggtttgtctaacatgtgcaacattgcacatgttaa 34802001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 23808433 - 23808475
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaact 113  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  23808433 gggtttgtctaacatgtacaacattgcacatgttaaaataact 23808475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 25532206 - 25532252
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaac 116  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||    
T  25532206 agggtttgtctaacatgttcaacatcgcacatgttaaaataactaac 25532252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 13322017 - 13322054
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13322017 cttcttaacatatgcaaatttgcacatgatagaaaaac 13322054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 34050463 - 34050422
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaac 112  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  34050463 gggtttgtctaacatgtgcaatattgcacatgttaaagcaac 34050422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 39150507 - 39150462
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||    
T  39150507 agggtttgtctaacatgtgcaatattgcacatgttaaggcaactaa 39150462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 1502900 - 1502864
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1502900 agggtttgtctaacatgtgcaatattgcacatgttaa 1502864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 23591840 - 23591880
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaactcat 256  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  23591840 ttcttaacatgtgcaaatttgcacatgatagaaaaactcat 23591880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 41624832 - 41624872
Alignment:
Q  75 ttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  41624832 ttgtctaacatgtgcaatattgcacatgttaaagcaactaa 41624872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 51382369 - 51382405
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  51382369 agggtttgtctaacatgtgcaatattgcacatgttaa 51382405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 313748 - 313783
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  313748 gggtttgtctaacatgtgcaatattgcacatgttaa 313783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 399602 - 399552
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaaccgtag 121  Q
    |||||||||||||||| |||| ||||||||||||| | ||||||| |||||    
T  399602 gggtttgtctaacatgcgcaatattgcacatgttatagcaactaaacgtag 399552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 38812881 - 38812923
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  38812881 cttcttaacatgtgcaaatttgcacatgatagaaaaacccata 38812923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 44918024 - 44918058
Alignment:
Q  72 ggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||| ||||||||||||||    
T  44918024 ggtttgtctaacatgtgcaatattgcacatgttaa 44918058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 313890 - 313927
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  313890 cttcttaacatgtgcaaatttgcacatgatagaaaaac 313927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 6180327 - 6180364
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  6180327 cttcttaacatgtgcaaatttgcacatgatagaaaaac 6180364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 6307500 - 6307537
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  6307500 agggtttgtctaacatgtgcaaaattgcatatgttaaa 6307537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 6570022 - 6569985
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  6570022 cttcttaacatgtgcaaatttgcacatgatagaaaaac 6569985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 6754469 - 6754514
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||| ||||||||||||||||| ||||||||||||||  |||||||    
T  6754469 agggattgtctaacatgtgcaatattgcacatgttaaggcaactaa 6754514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 17919451 - 17919496
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||| |||| |||||||||  |||||||    
T  17919451 agggtttgtctaacatgtgcaatattgtacatgttaaggcaactaa 17919496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 25465299 - 25465336
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  25465299 cttcttaacatgtgcaaatttgcacatgatagaaaaac 25465336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 30172020 - 30172057
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  30172020 cttcttaacatgtgcaaatttgcacatgatagaaaaac 30172057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 30187561 - 30187598
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  30187561 cttcttaacatgtgcaaatttgcacatgatagaaaaac 30187598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 31737710 - 31737669
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||| ||||||||| |||||||||||| ||||||    
T  31737710 tttgtctaacatatgcaacattacacatgttaaaataactaa 31737669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 34802108 - 34802145
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  34802108 cttcttaacatgtgcaaatttgcacatgatagaaaaac 34802145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 35512866 - 35512903
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  35512866 cttcttaacatgtgcaaatttgcacatgatagaaaaac 35512903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 41624970 - 41625007
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||  |||||||||||||||||||||||||||||    
T  41624970 cttcttatcatatgcaaatttgcacatgatagaaaaac 41625007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 51920456 - 51920427
Alignment:
Q  227 tgcaaatttgcacatgatagaaaaactcat 256  Q
    ||||||||||||||||||||||||||||||    
T  51920456 tgcaaatttgcacatgatagaaaaactcat 51920427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 1502756 - 1502720
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  1502756 ttcttaacatgtgcaaatttgcacatgatagaaaaac 1502720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 5875252 - 5875216
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaa 251  Q
    |||||||| || |||||||||||||||||||||||||    
T  5875252 cttcttaacatgtgcaaatttgcacatgatagaaaaa 5875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 23576450 - 23576414
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  23576450 ttcttaacatgtgcaaatttgcacatgatagaaaaac 23576414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 32716339 - 32716307
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||| ||||||||||||||    
T  32716339 tttgtctaacatgtgcaatattgcacatgttaa 32716307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 26003671 - 26003627
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26003671 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 26003627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 7720116 - 7720157
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7720116 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 7720157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 16754968 - 16755013
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  16754968 agggtttgtctaacatgtgcaacattgcaaatgttaaaacaactaa 16755013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 43806357 - 43806398
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43806357 agggtttgtctaacatgtgcaacattgcacatgttaaaacaa 43806398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 36612912 - 36612867
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||    
T  36612912 agggtttgtctaacatgtgcaacattgctcatgttaaaataactaa 36612867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 36620763 - 36620718
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||    
T  36620763 agggtttgtctaacatgtgcaacattgctcatgttaaaataactaa 36620718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 38148381 - 38148337
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  38148381 gggtttgtctaccatgtgcaactttgcacatgttaaaacaactaa 38148337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 23932706 - 23932745
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactc 254  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  23932706 cttcttaatatatgcaaatttgcacatgatagaaaaactc 23932745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 5853500 - 5853458
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  5853500 cttcttaacatgtgcaaatttgcacatgatagaaaaactcata 5853458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 16493569 - 16493527
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  16493569 cttcttaacatgtgcaaatttgcacatgatagaaaaactcata 16493527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 22704678 - 22704720
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  22704678 cttcttaagatgtgcaaatttgcacatgatagaaaaactcata 22704720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 29981405 - 29981364
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaa 111  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  29981405 agggtttgtctaacatatgcaatattgcacatgttaaaacaa 29981364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 45062339 - 45062380
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcat 256  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  45062339 cttcttaatatgtgcaaatttgcacatgatagaaaaactcat 45062380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 12016664 - 12016700
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  12016664 agggtttgtctaacatgtgcaatattgcacatgttaa 12016700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 15411802 - 15411766
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    ||||||||||||||||||||| |||||||||||||||    
T  15411802 gggtttgtctaacatgtgcaatattgcacatgttaaa 15411766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 16126739 - 16126703
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  16126739 agggtttgtctaacatgtgcaatattgcacatgttaa 16126703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 19228423 - 19228459
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19228423 agggtttgtctaacatgtgcaatattgcacatgttaa 19228459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 23932563 - 23932599
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    ||||||||||||||||||||| |||||||||||||||    
T  23932563 gggtttgtctaacatgtgcaatattgcacatgttaaa 23932599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 26230033 - 26229997
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26230033 agggtttgtctaacatgtgcaatattgcacatgttaa 26229997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 27665223 - 27665179
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||    
T  27665223 gggtttgtctaacatgtgcaatattgcacatgttaaggcaactaa 27665179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 35729114 - 35729150
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    ||||||||||||||||||||| |||||||||||||||    
T  35729114 gggtttgtctaacatgtgcaatattgcacatgttaaa 35729150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 5583737 - 5583702
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  5583737 gggtttgtctaacatgtgcaatattgcacatgttaa 5583702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 8064842 - 8064881
Alignment:
Q  76 tgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  8064842 tgtctaacatgtgcaacattgcacgtgttaaaacatctaa 8064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 10690781 - 10690816
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10690781 gggtttgtctaacatgtgcaatattgcacatgttaa 10690816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 11660931 - 11660892
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactc 254  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  11660931 cttcttaacatgtgcaaatttgcacatgatagaaaaactc 11660892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 16919333 - 16919298
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  16919333 gggtttgtctaacatgtgcaatattgcacatgttaa 16919298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 22705453 - 22705488
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22705453 gggtttgtctaacatgtgcaatattgcacatgttaa 22705488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 39904227 - 39904192
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||| ||||||||||||||    
T  39904227 gggtttgtctaacatgtgcaatattgcacatgttaa 39904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 15231972 - 15232014
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcata 257  Q
    |||||||| || ||||||||||||||| |||||||||||||||    
T  15231972 cttcttaacatgtgcaaatttgcacataatagaaaaactcata 15232014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 6109530 - 6109567
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  6109530 cttcttaacatgtgcaaatttgcacatgatagaaaaac 6109567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 8065264 - 8065301
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  8065264 cttcttaacatgtgcaaatttgcacatgatagaaaaac 8065301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 12016807 - 12016844
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  12016807 cttcttaatatgtgcaaatttgcacatgatagaaaaac 12016844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 12919528 - 12919495
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||| |||||||||||||||    
T  12919528 tttgtctaacatgtgcaatattgcacatgttaaa 12919495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 16126596 - 16126559
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  16126596 cttcttaacatgtgcaaatttgcacatgatagaaaaac 16126559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 29795055 - 29795092
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  29795055 agggtttgtctaacatgtgcaatattgcacatattaaa 29795092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 43388518 - 43388481
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  43388518 cttcttaacatgtgcaaatttgcacatgatagaaaaac 43388481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 43388947 - 43388902
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||||||||||| |||||||| ||||||||| ||||| |||||||    
T  43388947 agggtttgtctaatatgtgcaatattgcacatcttaaagcaactaa 43388902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 4576362 - 4576326
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  4576362 ttcttaacatatgcgaatttgcacatgatagaaaaac 4576326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 14377423 - 14377467
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||| |||||| ||||||||||||||  |||||||    
T  14377423 gggtttgtctaacacgtgcaatattgcacatgttaaggcaactaa 14377467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 20566197 - 20566161
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaa 107  Q
    |||| |||||||||||||||| |||||||||||||||    
T  20566197 gggtctgtctaacatgtgcaatattgcacatgttaaa 20566161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 24729613 - 24729577
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  24729613 ttcttaacatgtgcaaatttgcacatgatagaaaaac 24729577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 29157865 - 29157829
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  29157865 ttcttaacatgtgcaaatttgcacatgatagaaaaac 29157829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 38248456 - 38248420
Alignment:
Q  216 ttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  38248456 ttcttaacatgtgcaaatttgcacatgatagaaaaac 38248420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 13838 - 13794
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  13838 gggtttttctaacatgtgcaacattgcacatgttaaaacaactaa 13794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 94055 - 94014
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaactcat 256  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  94055 cttcttaacatatgcaaatttgcacatgatagaaaaactcat 94014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 94195 - 94154
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  94195 tttgtctaacatatgcaacattgcacatgttaaatcaactaa 94154  T

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Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 31881 - 31836
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  31881 agggtttgtctaacatgtgcaacattgcacatgttagagcaactaa 31836  T

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Target: scaffold0111 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 37294 - 37259
Alignment:
Q  71 gggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||||||||||||||||||||    
T  37294 gggtttgtctaacatgtgcaacattgcacatgttaa 37259  T

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Target: scaffold0111; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 37151 - 37114
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  37151 cttcttaacatgtgcaaatttgcacatgatagaaaaac 37114  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 52959 - 52923
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  52959 agggtttgtctaacatgtgcaatattgcacatgttaa 52923  T

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Target: scaffold0061; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 52816 - 52779
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  52816 cttcttaacatgtgcaaatttgcacatgatagaaaaac 52779  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 145675 - 145711
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| ||||||||||||||    
T  145675 agggtttgtctaacatgtgcaatattgcacatgttaa 145711  T

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Target: scaffold0017; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 145818 - 145855
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  145818 cttcttaacatgtgcaaatttgcacatgatagaaaaac 145855  T

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Target: scaffold0631 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 443 - 484
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaaaacaactaa 115  Q
    ||||| |||||||||||| ||||||||||||||| |||||||    
T  443 tttgtttaacatgtgcaatattgcacatgttaaatcaactaa 484  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 13226 - 13263
Alignment:
Q  215 cttcttaaaatatgcaaatttgcacatgatagaaaaac 252  Q
    |||||||| || ||||||||||||||||||||||||||    
T  13226 cttcttaacatgtgcaaatttgcacatgatagaaaaac 13263  T

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Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 13083 - 13119
Alignment:
Q  70 agggtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||||||| |||||| |||||||    
T  13083 agggtttgtctaacatgtgcaatattgcatatgttaa 13119  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 193410 - 193377
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacatgttaa 106  Q
    ||||||||||||||||||| ||||||||||||||    
T  193410 gtttgtctaacatgtgcaatattgcacatgttaa 193377  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 2476 - 2447
Alignment:
Q  224 atatgcaaatttgcacatgatagaaaaact 253  Q
    ||||||||||||||||||||||||||||||    
T  2476 atatgcaaatttgcacatgatagaaaaact 2447  T

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Target: scaffold0727 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 5692 - 5724
Alignment:
Q  74 tttgtctaacatgtgcaacattgcacatgttaa 106  Q
    |||||||||||||||||| ||||||||||||||    
T  5692 tttgtctaacatgtgcaatattgcacatgttaa 5724  T

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Target: scaffold0305 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 17979 - 17951
Alignment:
Q  73 gtttgtctaacatgtgcaacattgcacat 101  Q
    |||||||||||||||||||||||||||||    
T  17979 gtttgtctaacatgtgcaacattgcacat 17951  T

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