View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_low_12 (Length: 427)
Name: NF11828_low_12
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 45930788 - 45930387
Alignment:
| Q |
10 |
cagaacctgtgaaaagaaatatatatgatagttagtatattctaaatacagtcgagttgtataatgtatacagtattttctagaataagatattgtacaa |
109 |
Q |
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| T |
45930788 |
cagaaactgtgaaaagaaatatatatgatagttagtatattctaaatacagtcgagttgtataatgtatacagtattttctagaataagatattgtacaa |
45930689 |
T |
|
| Q |
110 |
gtagcatggtacttcacnnnnnnngtaaattaataagatacaatatcaacaaatatgttagaccgacactctttgtaccacatgtatttcataagcatcg |
209 |
Q |
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| T |
45930688 |
gtagcatggtacttcactttttttgtaaattaataagatacaatatcaacaaatatgttagaccgacactctttgtaccacatgtatttcataagcatcg |
45930589 |
T |
|
| Q |
210 |
attgtttgaaactcggctgtaattacgaagtaaatgattgcataaccacttctccccatcaaagacataacgtagacaacattgaaagtcaataaaacat |
309 |
Q |
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| T |
45930588 |
attgtttgaaactcggctgcaattacgaagtaaatgattgcataaccacttctccccatcaaagacataacgtagacaacattgaaagtcaataaaacat |
45930489 |
T |
|
| Q |
310 |
taaaactgagagaaatgttcttagcatgtgtgaattaaccgggtgggtcaacactgattactgttaacgtaggatcttaagtgggtcgagaagtgacctt |
409 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45930488 |
taaaacagagagaaatgttcttagcatgtgtgaattaaccgggtgggtcaacactgattactgttaacgtaggatcttaagtgggtcgagaagtgacctt |
45930389 |
T |
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| Q |
410 |
ac |
411 |
Q |
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|| |
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| T |
45930388 |
ac |
45930387 |
T |
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