View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11828_low_13 (Length: 421)
Name: NF11828_low_13
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_13 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 21 - 421
Target Start/End: Original strand, 11263347 - 11263749
Alignment:
| Q |
21 |
caatcaaggtgaacaactgataaggtccgtgagataagatgcgggccaaggtgaacaaccaacatggtctatggtttagaagtacacacagaccaaaatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11263347 |
caatcaaggtgaacaactgataaggtccgtgagataagatgcgggccaaggtgaacaaccaacatggtctatggtttagaagtacacacagaccaaaatg |
11263446 |
T |
|
| Q |
121 |
tgaacaaccggaatggtctttggcataaatccactaaaggataagctctacagctgtccttcaaaggacaatagtcgttcgtaaatggagcacgattgtc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11263447 |
tgaacaaccggaatggtctttggcataaatccac----------------cagctgtccttcaaaggacaatagttgttcgtaaatggagcacgattgtc |
11263530 |
T |
|
| Q |
221 |
ctttcgagacaactgtgcatgcaaaggtacaaggacctaaaccctaatcctactataactactagctcttaagcctaggaccatgtatgttctctattta |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11263531 |
ctttcgagacaactgtgcatgcaaaggtacaaggacctaaaccctaatcctactataaatactagctcttgagcctaggaccatgtatgttctctattta |
11263630 |
T |
|
| Q |
321 |
ctacacaaacctatcgtcatgtactca------------------cacgtgcaggtacaccactctcattagcctggagaagaaggccgagggcaacaga |
402 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
11263631 |
ctacacaaacctatcgtcatgtactcactgacttgagcgttggagcacgtgcaggtacaccactctcattcgcctggagaagaaggccgagggcaacgga |
11263730 |
T |
|
| Q |
403 |
gaagaaggcaacaattgac |
421 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11263731 |
gaagaaggcaacaattgac |
11263749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University