View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11828_low_14 (Length: 383)
Name: NF11828_low_14
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 49655922 - 49656268
Alignment:
| Q |
8 |
ataataatactcctaactatttcaattacaaatttaaaaccgtccccaagcgcatagttcatttatata------ggttgagatgttgaaagagtattac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49655922 |
ataataatactcctaactatttcaattacaaatttaaaaccgtccccgagcgcatagttcatttatatatatataggttgagatgttgaaagagtattac |
49656021 |
T |
|
| Q |
102 |
aaaaaaggtccatatatgactctaacattaacaaattaatcactaacgtttgtctattaaaaaattataagtctaaaactattcaagacgttaccaatta |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49656022 |
aaaaaaggtccata----------acattaacaaattaatcactaacgtttgtctattaaaaaattataagtctaaaactattcaaaacgttaccaatta |
49656111 |
T |
|
| Q |
202 |
ttcaagtgctttataggttcttgttaatgaaatcatattgagacaagtaagtggctaatcaaacttttccaatagatatgttttgtagaagttagaattt |
301 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49656112 |
ttcaagtgctt-----------gttaatgaaatcatattgagacaagtaagtggctaatcaaacttttccaatagatatgttttgtagaaattagaattt |
49656200 |
T |
|
| Q |
302 |
cacgtcagacaccgtattccaaacacattctacatggtttctgattatatattaactccctcaccctc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49656201 |
cacgtcagacaccgtattccaaacacattctacatggtttctgattatatattaactccctcaccctc |
49656268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University