View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11828_low_16 (Length: 370)
Name: NF11828_low_16
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 4803941 - 4803760
Alignment:
| Q |
20 |
gaaaaacatgtctatgaagctgacattgtgtttgtatatttcaatccagactgagttctcattggaggtagagaagcatcggaaggcgaaaaagcgattc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803941 |
gaaaaacatgtctatgaagctgacattgtgtttgtatatttcaatccagactgagttctcattggaggtagagaagcatcggaaggcgaaaaagcgattc |
4803842 |
T |
|
| Q |
120 |
aaattttgataccgacacaagaatcagaccgaagttcttgaatgcaagtgtcggttttcggtggttcttggtttcaaaaaga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803841 |
aaattttgataccgacacaagaatcagaccgaagttcttgaatgcaagtgtcggttttcggtggttcttggtttcaaaaaga |
4803760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 233 - 360
Target Start/End: Complemental strand, 4803759 - 4803632
Alignment:
| Q |
233 |
aatggtttaccagaagttgctgaatatcccttttgcaactctaagcaaacgttaagactgtcacacacaattcccttttaaaagtctaaagtcacaatgc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803759 |
aatggtttaccagaagttgctgaatatcccttttgcaactctaagcaaacgttaagactgtcacacacaattcccttttaaaagtctaaagtcacaatgc |
4803660 |
T |
|
| Q |
333 |
cgcattgcatttttctaataacatctca |
360 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
4803659 |
cgcatagcatttttctaataacatctca |
4803632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 129 - 259
Target Start/End: Complemental strand, 4806321 - 4806193
Alignment:
| Q |
129 |
taccgacacaagaatcagaccgaagttcttgaatgcaagtgtcggttttcggtggttcttggtttcaaaaagatatattgaacctggttttcatttgtat |
228 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| || | |||||||||||| |||||||||||||||||| | |
|
|
| T |
4806321 |
taccgacacaagaatcagactgaagttcttgaatgcaaacgtcggtttt-ggtggttctttcttccgaaaagatatatt-aacctggttttcatttgtgt |
4806224 |
T |
|
| Q |
229 |
gtgtaatggtttaccagaagttgctgaatat |
259 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
4806223 |
gtgtaatgatttaccagaagttgctgaatat |
4806193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 4824251 - 4824146
Alignment:
| Q |
153 |
gttcttgaatgcaagtgtcggttttcggtggttcttggtttcaaaaagatatattgaacctggttttcatttgtatgtgtaatggtttaccagaagttgc |
252 |
Q |
| |
|
||||| |||||||||| ||| |||| ||||||| ||| || ||||| ||||||||||||||||||| ||||||| |||| ||| ||||||||||||| | |
|
|
| T |
4824251 |
gttctagaatgcaagtatcgttttt-ggtggtttttgcttccaaaaggatatattgaacctggtttacatttgtgagtgtcatgttttaccagaagtttc |
4824153 |
T |
|
| Q |
253 |
tgaatat |
259 |
Q |
| |
|
||||||| |
|
|
| T |
4824152 |
tgaatat |
4824146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 4806977 - 4806919
Alignment:
| Q |
58 |
tttcaatccagactgagttctcattggaggtagagaagcatcggaaggcgaaaaagcga |
116 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
4806977 |
tttcaatctagactgagttctcgttggagatagagaagccccggaaggtgaaaaagcga |
4806919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 4819204 - 4819127
Alignment:
| Q |
182 |
ggttcttggtttcaaaaagatatattgaacctggttttcatttgtatgtgtaatggtttaccagaagttgctgaatat |
259 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||| |||||| ||| |||||||||| |||||| |||||||| |
|
|
| T |
4819204 |
ggttcttgcttccaaaaagatatactgaacctggtttacatttgcgtgtataatggtttatttgaagtttctgaatat |
4819127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 10779333 - 10779297
Alignment:
| Q |
20 |
gaaaaacatgtctatgaagctgacattgtgtttgtat |
56 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10779333 |
gaaaaacatgtctatgaagctaaaattgtgtttgtat |
10779297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University