View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_low_17 (Length: 362)
Name: NF11828_low_17
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 46438641 - 46438307
Alignment:
| Q |
19 |
attcgttcatagaaaagcttgttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaataagaaaaatattcaaaagaaaatcg |
118 |
Q |
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| T |
46438641 |
attcgttcataaaaaagcttgttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaataagaaaaatattcaaaagaaaatcg |
46438542 |
T |
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| Q |
119 |
cttcaggaatggaactaattcagtgatatttatgacatttttcctcatcaatgttattttgaccattataataagatattctccaaatttatgcaaacat |
218 |
Q |
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| T |
46438541 |
cgtcaggaatggaactaattcagtgatatttatgacatttttcctcatcgatgttattttgaccattataataagatattctccaaatttatgcaaacat |
46438442 |
T |
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| Q |
219 |
atataaaactgcattatcataactagctgcgtaccagcaagctctgactagacaaagcctctaccactgactttcctgcaaaaaagccgcgaccaagggg |
318 |
Q |
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| T |
46438441 |
atataaaactgcattatcataactagctgcgtaccagcaagctctgactagacaaagcctctaccactgactttcctgcaaaaaagccgcgaccaagggg |
46438342 |
T |
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| Q |
319 |
gctgtatgctacaattccaatgccaagctctctgc |
353 |
Q |
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| T |
46438341 |
gctgtatgctacaattccaatgccaagctctctgc |
46438307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 46432999 - 46432926
Alignment:
| Q |
19 |
attcgttcatagaaaagcttgttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaa |
92 |
Q |
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|||| |||||||| | |||||||||||||| |||| |||| |||||||| ||||||||| |||||||||||| |
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| T |
46432999 |
attctttcatagattatcttgttcttttccagatttactccagtgaacctgggatgcatattctgttacagaaa |
46432926 |
T |
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