View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_low_28 (Length: 284)
Name: NF11828_low_28
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 110 - 266
Target Start/End: Original strand, 24309357 - 24309515
Alignment:
| Q |
110 |
ggtacccttcataagagacatagtagttcaattccttctattta--aatgctttggttggtgctatttaacattctcaaaaacaaaacctaacatacaat |
207 |
Q |
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| T |
24309357 |
ggtacccttcataagagacatagtagttcaattccttctatatataaattctttggttctatttatttaccattctcaaaaacaaaacctaacatacaat |
24309456 |
T |
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| Q |
208 |
ttttgttttcttcttaggatggagccacctcatcacattttcttagcaagtgaagagga |
266 |
Q |
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| T |
24309457 |
ttttgttttcttcttaggatggagccacctcatcacattttcttagcaagtgaagagga |
24309515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 24309259 - 24309307
Alignment:
| Q |
12 |
agagagatgaagggataagtattttcaggtgttcagaacacttctatag |
60 |
Q |
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| T |
24309259 |
agagagatgaagggataagtattttcaggtgttcagaacacttctatag |
24309307 |
T |
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