View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_low_29 (Length: 275)
Name: NF11828_low_29
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 48445917 - 48445673
Alignment:
| Q |
17 |
caaaggtcaattatatcttaaatttctaaaacacattgttttgnnnnnnnnnnnnn-taataatatgaaactggcaaaaataatttgacaggagagatat |
115 |
Q |
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| T |
48445917 |
caaaggtcaattatatcttaaatttctaaaacacattgttttgaaaaagaaaaaaaataataatatgaaactggcaaaaataatttgacaggagagatat |
48445818 |
T |
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| Q |
116 |
tcatacctgttctagatgcaaaatctttgccttgcaaaacaaagtcatcatatcatccataccataacaaatccttactttggccaaattaagtaaagca |
215 |
Q |
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| T |
48445817 |
tcatacctgttctagatgcaaaatctttgccttgcaaaacaaagtcatcatatcatccataccataacaaatccttactttggccaaattaagtaaagca |
48445718 |
T |
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| Q |
216 |
ttcaactttactgttggatcatcaaacaactccggcgaacttaat |
260 |
Q |
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| T |
48445717 |
ttcaactttactgctggatcatcaaacaactccggcgaacttaat |
48445673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 7175571 - 7175678
Alignment:
| Q |
113 |
tattcatacctgttctagatgcaaaatctttgccttgcaaaacaaagtcatcatatcatccataccataacaaatccttactttggccaaattaagtaaa |
212 |
Q |
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||||||||||| ||||| ||||| |||||||||||| |||| ||||||||||| | ||||||| ||| ||||| |||||||| |||||||| ||||| |
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| T |
7175571 |
tattcataccttttctacatgcataatctttgccttacaaaccaaagtcatcaaagtatccatatcatggcaaatacttactttcaccaaattaggtaaa |
7175670 |
T |
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| Q |
213 |
gcattcaa |
220 |
Q |
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| T |
7175671 |
gcattcaa |
7175678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 43098801 - 43098760
Alignment:
| Q |
179 |
ataacaaatccttactttggccaaattaagtaaagcattcaa |
220 |
Q |
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| T |
43098801 |
ataacgaatccttactttgaccaaattaggtaaagcattcaa |
43098760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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