View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_low_31 (Length: 254)
Name: NF11828_low_31
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 22073857 - 22073616
Alignment:
| Q |
1 |
tgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaagaattctctaccaaagtaaggcacttgctgcatccaaaaaagtttgtgttcattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22073857 |
tgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaagaattctctaccaaagtaaggcacttgctgcatcaaaaaaagtttgtgttcattc |
22073758 |
T |
|
| Q |
101 |
tcctcaactgcccaatccaaaacaatttgatggaagcagaatccaaccagaggtcgcggttctaagcagagaaaaaagaaatataattattcaaaataac |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| | ||||||||| |
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| T |
22073757 |
tcctcaactgcccaatccaaaacaatttaatggaagcagaatccaaccagaggtcgcagttctaagcagagaaaaaagaaaaagaattttgcaaaataac |
22073658 |
T |
|
| Q |
201 |
aagttacatgtgccattaacaggtcatgccgaatcttcatct |
242 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||| |
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| T |
22073657 |
aagttagatgtgccattaacaggtcatgctgaatcttcatct |
22073616 |
T |
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