View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_low_36 (Length: 233)
Name: NF11828_low_36
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 40583630 - 40583423
Alignment:
| Q |
16 |
tagggccttttgaaaagatagagttacttttcttttcaatgttttcaaggtcaccaatcttaaccgactctcaatcataaaatagcatcatcaatcaata |
115 |
Q |
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| T |
40583630 |
tagggccttttgaaaagatagagttacttttcttttcaatgttttcaaggtcaccaatcttaaccgactctcaatcataaaatagcatcatcaatcaata |
40583531 |
T |
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| Q |
116 |
atagattgaaactatttacttcatcgttactctttccctcccaaaatattagttattttttcaaagaggtacgtgttagttaattgttagatttcaaaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40583530 |
atagattgaaactatttacttcatcgttactctttccctcccaaaatattagttattttttcaaagaggtacgtgttagttaattgttagatttcaaaac |
40583431 |
T |
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| Q |
216 |
caaaactt |
223 |
Q |
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|||||||| |
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| T |
40583430 |
caaaactt |
40583423 |
T |
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