View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11828_low_38 (Length: 219)

Name: NF11828_low_38
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11828_low_38
NF11828_low_38
[»] scaffold0035 (2 HSPs)
scaffold0035 (10-186)||(80085-80265)
scaffold0035 (118-186)||(84136-84204)
[»] chr8 (21 HSPs)
chr8 (1-186)||(1656170-1656359)
chr8 (10-184)||(6334111-6334289)
chr8 (10-187)||(36797721-36797902)
chr8 (14-186)||(14033418-14033594)
chr8 (12-186)||(36803897-36804075)
chr8 (12-186)||(417446-417625)
chr8 (15-186)||(24516864-24517039)
chr8 (12-186)||(23712605-23712782)
chr8 (13-186)||(6337888-6338065)
chr8 (12-185)||(14029629-14029805)
chr8 (12-182)||(12876976-12877150)
chr8 (21-186)||(1659902-1660070)
chr8 (21-185)||(413432-413597)
chr8 (32-186)||(12880581-12880739)
chr8 (51-186)||(37404553-37404692)
chr8 (116-187)||(24512834-24512905)
chr8 (10-108)||(27276712-27276812)
chr8 (10-61)||(24512923-24512974)
chr8 (132-187)||(27276805-27276860)
chr8 (37-111)||(27243341-27243419)
chr8 (37-111)||(27254916-27254994)
[»] chr5 (13 HSPs)
chr5 (10-186)||(31173917-31174097)
chr5 (10-186)||(28396307-28396487)
chr5 (12-186)||(27261427-27261605)
chr5 (12-186)||(31170155-31170333)
chr5 (13-187)||(41882128-41882306)
chr5 (15-186)||(28392339-28392514)
chr5 (12-186)||(41873327-41873506)
chr5 (40-185)||(27265537-27265685)
chr5 (74-187)||(24089396-24089513)
chr5 (10-112)||(20892996-20893098)
chr5 (10-112)||(20914445-20914547)
chr5 (29-83)||(24090378-24090432)
chr5 (61-112)||(20922135-20922187)
[»] chr7 (8 HSPs)
chr7 (10-187)||(31297880-31298061)
chr7 (10-187)||(31297632-31297814)
chr7 (10-185)||(24050566-24050745)
chr7 (12-186)||(39751447-39751625)
chr7 (10-186)||(5098228-5098407)
chr7 (10-185)||(39755220-39755381)
chr7 (10-160)||(24059110-24059262)
chr7 (64-186)||(5094165-5094291)
[»] chr3 (9 HSPs)
chr3 (10-185)||(44185270-44185449)
chr3 (13-186)||(37982168-37982344)
chr3 (20-185)||(3808809-3808978)
chr3 (30-186)||(3805237-3805397)
chr3 (33-186)||(37974856-37975014)
chr3 (48-186)||(44174729-44174870)
chr3 (48-186)||(44181429-44181570)
chr3 (68-186)||(44174590-44174711)
chr3 (68-186)||(44181290-44181411)
[»] chr2 (7 HSPs)
chr2 (10-183)||(40325705-40325883)
chr2 (15-184)||(40322002-40322175)
chr2 (10-186)||(36216127-36216307)
chr2 (12-187)||(2387165-2387342)
chr2 (10-152)||(2381717-2381863)
chr2 (10-149)||(8264581-8264724)
chr2 (49-109)||(1577225-1577284)
[»] chr4 (11 HSPs)
chr4 (12-187)||(50998027-50998206)
chr4 (10-184)||(22158611-22158789)
chr4 (10-186)||(25920225-25920405)
chr4 (15-186)||(45698270-45698445)
chr4 (10-184)||(25923050-25923227)
chr4 (10-185)||(23314163-23314343)
chr4 (12-186)||(23317922-23318095)
chr4 (35-185)||(54397547-54397701)
chr4 (85-187)||(51754664-51754770)
chr4 (116-186)||(51754468-51754538)
chr4 (31-103)||(43433575-43433647)
[»] chr6 (2 HSPs)
chr6 (10-186)||(13845036-13845215)
chr6 (116-186)||(13848902-13848972)
[»] chr1 (4 HSPs)
chr1 (12-187)||(8026541-8026712)
chr1 (14-187)||(8272153-8272337)
chr1 (73-186)||(25644564-25644681)
chr1 (40-146)||(21826237-21826345)
[»] scaffold0265 (1 HSPs)
scaffold0265 (40-146)||(6439-6547)


Alignment Details
Target: scaffold0035 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 80265 - 80085
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80265 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 80166  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  80165 tacttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatgaaaacttttgattggtttgg 80085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 84136 - 84204
Alignment:
Q  118 ttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  84136 ttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaaattttgattggtttgg 84204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 1656359 - 1656170
Alignment:
Q  1 tcaactaaattggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1656359 tcaactaaattggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaa 1656260  T
Q  101 ataataaaatacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    |||||||||||| ||    ||||||||||||||| |||||||||||||||||| |||||||||| | ||| ||| |||||||||||||||    
T  1656259 ataataaaatacttgctaaatttttgcaaaataaaataataaatgttattattttaatggagtacatatggaaacttttgattggtttgg 1656170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 6334289 - 6334111
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6334289 ttggagagtgattgaattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 6334190  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggttt 184  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  6334189 tacttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatgaaaacttttgattggttt 6334111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 36797902 - 36797721
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36797902 ttggagagtgattggattagaggtgaaatttaattattgtaatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 36797803  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||    
T  36797802 tacttgctaaatttttgcaaaataaaataataaatgttattattctaatggggtacacatggaaacttttgattggtttgga 36797721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 14033418 - 14033594
Alignment:
Q  14 agagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacg 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  14033418 agagtgattggattagagatgaaatttaattattgtgatggtttaaattgtaaaaaatcatcaatttaagatggggtgaatatgcaaataataaaatact 14033517  T
Q  114 tg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||    ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  14033518 tgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacataaaaacttttgattggtttgg 14033594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 36803897 - 36804075
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36803897 ggagagtgattggattagaggagaaatttagttattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 36803996  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    | ||    ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||  ||||||||||||||||    
T  36803997 catgctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatgaatttttttgattggtttgg 36804075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 417446 - 417625
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtg-aatatgcaaataataaaat 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  417446 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaaatatgcaaataataaaat 417545  T
Q  111 acgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    || ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||    
T  417546 acatgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaaattttgattagtttgg 417625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 24516864 - 24517039
Alignment:
Q  15 gagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgt 114  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24516864 gagtgattggattagaggataaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacat 24516963  T
Q  115 g----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    |    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  24516964 gctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatggaaaattttgattggtttgg 24517039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 23712782 - 23712605
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23712782 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgta-aaaatcattaatttaagatggggtgaatatgcaaataataaaata 23712684  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    | ||    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  23712683 catgctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatggaaaattttgattggtttgg 23712605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 6337888 - 6338065
Alignment:
Q  13 gagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatac 112  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6337888 gagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatac 6337987  T
Q  113 gtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
     ||    |||| |||||||||| ||||||||| ||||||||||||||||||| | ||| ||| |||||||||||||||    
T  6337988 atgctaaatttgtgcaaaataaaataataaatattattattctaatggagtacaaatggaaaattttgattggtttgg 6338065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 14029805 - 14029629
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14029805 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgta-aaaatcattaatttaagatggggtgaatatgcaaataataaaata 14029707  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttg 185  Q
    | ||    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||    
T  14029706 catgctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatggaaaattttgattggtttg 14029629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 12877150 - 12876976
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12877150 ggagagtgattggattagaggagaaatttaattattatgatggtttaaattgtaaataatcattaatttaagatggggtgaatatgcaaataataaaata 12877051  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggt 182  Q
    | ||    |||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  12877050 catgctaaatttttacaaaataaaataataaatattattattctaatggagtatacatggaaaattttgattggt 12876976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 1659902 - 1660070
Alignment:
Q  21 ttggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----a 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||    |    
T  1659902 ttggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattagtttaagat-gggtgaatatgcaaataataaaatacatgctaaa 1660000  T
Q  117 tttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  1660001 tttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaaattttgattggtttgg 1660070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 413597 - 413432
Alignment:
Q  21 ttggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----a 116  Q
    ||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |    
T  413597 ttggattagaggtaaaatttaattattgtgat---ttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacttgctaaa 413501  T
Q  117 tttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttg 185  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||    
T  413500 tttttgcaaaataaaataataaatgttattattctaatgaagtacacatgaaaacttttgattgatttg 413432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 12880581 - 12880739
Alignment:
Q  32 gtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaa 127  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||    ||||||||||||    
T  12880581 gtgaaatttaattattatgatggtttaaattgtaaaaaattattaatttaagatgaggtgaatatgcaaataataaaatacttgctaaatttttgcaaaa 12880680  T
Q  128 taagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  12880681 taaaataataaatgttattattctaatggagtacacatggaaacttttgattggtttgg 12880739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 37404553 - 37404692
Alignment:
Q  51 atggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataagataataaatgttatt 146  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||     |||||||||||| | |||||||||||||||    
T  37404553 atggtttaaattgtaaaaaatcattaatttaagacggggtgaatatgcaaataataaaatacttgttaattttttgcaaaattaaataataaatgttatt 37404652  T
Q  147 attctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    |||||||||||||| ||||| ||| |||||||||||||||    
T  37404653 attctaatggagtacacatggaaacttttgattggtttgg 37404692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 24512905 - 24512834
Alignment:
Q  116 atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  24512905 atttttgcaaaataaaataataaatgttattattctaatggagtacacatgaaaacttttgattggtttgga 24512834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 27276712 - 27276812
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaa----gatggggtgaatatgcaaataat 105  Q
    |||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    |||||||||||||||||||||||    
T  27276712 ttggagagtgattggattggagg-gaaatt-aattaatgtgatggtttaaattgtaaaacatcattaatttaagatggatggggtgaatatgcaaataat 27276809  T
Q  106 aaa 108  Q
    |||    
T  27276810 aaa 27276812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 24512974 - 24512923
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaat 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24512974 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaat 24512923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 27276805 - 27276860
Alignment:
Q  132 ataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  27276805 ataataaatgttattattctaatggagtacacatgaaattttttgattgatttgga 27276860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 27243419 - 27243341
Alignment:
Q  37 atttaattattgtgatggtttaaattgtaaaaaatcattaatttaag----atggggtgaatatgcaaataataaaata 111  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||    ||||| |||||||||||||| |||||||    
T  27243419 atttaattaatgtgatggtttaaattgtaaaatattattaatttaagatgtatgggttgaatatgcaaatagtaaaata 27243341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 27254994 - 27254916
Alignment:
Q  37 atttaattattgtgatggtttaaattgtaaaaaatcattaatttaag----atggggtgaatatgcaaataataaaata 111  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||    ||||| |||||||||||||| |||||||    
T  27254994 atttaattaatgtgatggtttaaattgtaaaatattattaatttaagatgtatgggttgaatatgcaaatagtaaaata 27254916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 31173917 - 31174097
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31173917 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 31174016  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  31174017 tacttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaacttttgattggtttgg 31174097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 28396307 - 28396487
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28396307 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaattattaatttaagatggggtgaatatgcaaataataaaa 28396406  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  28396407 tacttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaacttttgattggtttgg 28396487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 27261605 - 27261427
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27261605 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 27261506  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    | ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  27261505 catgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatgaaaaattttgattgatttgg 27261427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 31170333 - 31170155
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31170333 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 31170234  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    | ||    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  31170233 catgctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatggaaaattttgattggtttgg 31170155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 41882128 - 41882306
Alignment:
Q  13 gagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatac 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  41882128 gagagtgattggattagaagtgaaatttaattattgtgatggtttaaatcgtaaaaaatcattaatttaagatgaagtgaatatgcaaataataaaatac 41882227  T
Q  113 gtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
     ||    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41882228 ttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtatacatgaaaacttttgattggtttgga 41882306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 28392514 - 28392339
Alignment:
Q  15 gagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgt 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  28392514 gagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatgggatgaatatgcaaataataaaatacat 28392415  T
Q  115 g----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    |    ||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||| |||||||||||||||    
T  28392414 gctaaatttttgcaaaataaaataataaatgttattattctaatggagcacacatggaaaattttgattggtttgg 28392339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 41873506 - 41873327
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagat-ggggtgaatatgcaaataataaaat 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  41873506 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaatatcattaatttaagatgggggtgaatatgcaaataataaaat 41873407  T
Q  111 acgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    || ||    ||||||| ||||||| ||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  41873406 acatgctaaatttttgtaaaataaaataataaatattattattctaatggagtacacatggaaaattttgattggtttgg 41873327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 27265537 - 27265685
Alignment:
Q  40 taattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataagataa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    ||||||||||||||| ||||    
T  27265537 taattattgtgatggtttaaattgtaaaaaatcattaatttaagatggg-tgaatatgcaaataataaaatacttgctaaatttttgcaaaataaaataa 27265635  T
Q  136 taaatgttattattctaatggagtatacatgaaaatttttgattggtttg 185  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  27265636 taaatgttattattctaatggagtacacatggaaacttttgattggtttg 27265685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 24089513 - 24089396
Alignment:
Q  74 ttaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaa 169  Q
    ||||||||| ||||||||||||||||||||||||||||| ||    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||    
T  24089513 ttaatttaaaatggggtgaatatgcaaataataaaatacatgctaaatttttgcaaaataaaataataaatgtgattattctaatggagtacacatggaa 24089414  T
Q  170 atttttgattggtttgga 187  Q
    |  ||| |||||||||||    
T  24089413 aaatttaattggtttgga 24089396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 20893098 - 20892996
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||  | |  |||| |||||| | |||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  20893098 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaagtgtcattaatttaaaatggggtgaatatgcaaataataaaa 20892999  T
Q  110 tac 112  Q
    |||    
T  20892998 tac 20892996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 20914445 - 20914547
Alignment:
Q  10 ttggagagtgattggattagaggtg-aaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 108  Q
    |||||||||||||||||| ||  || |||| |||||| | ||||||||| ||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  20914445 ttggagagtgattggatt-gaaatgaaaatctaattaatttgatggtttgaattgtaaaaggtcattaatttaaaatggggtgaatatgcaaataataaa 20914543  T
Q  109 atac 112  Q
    ||||    
T  20914544 atac 20914547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 24090432 - 24090378
Alignment:
Q  29 gaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaag 83  Q
    |||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  24090432 gaggggaaatttaattaatgtgatgggttaaattgtaaaacatcattaatttaag 24090378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 20922135 - 20922187
Alignment:
Q  61 ttgtaaaaaatcattaatttaagat-ggggtgaatatgcaaataataaaatac 112  Q
    ||||||||  |||||||||||| || |||||||||||| ||||||||||||||    
T  20922135 ttgtaaaatgtcattaatttaaaattggggtgaatatgaaaataataaaatac 20922187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 31297880 - 31298061
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31297880 ttggagagtgtttggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 31297979  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  31297980 tacttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaacttttgattggtttgga 31298061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 31297814 - 31297632
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaa-tcattaatttaagatggggtgaatatgcaaataataaa 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31297814 ttggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 31297715  T
Q  109 atacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
    |||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  31297714 atacatgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatgaaattttttgattggtttgga 31297632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 24050745 - 24050566
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24050745 ttggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 24050646  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttg 185  Q
    ||| ||    ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||    
T  24050645 tacatgctaaatttttgcaaaataaaataataattgttattattctaatggagtacacatgaaattttttgattgatttg 24050566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 39751625 - 39751447
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39751625 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 39751526  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    | ||    ||||||||||||||| ||||||||| |||||||| |||||||||| ||||| ||| |||||||||||||||    
T  39751525 catgctaaatttttgcaaaataaaataataaatattattattttaatggagtacacatggaaaattttgattggtttgg 39751447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 5098228 - 5098407
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  5098228 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaaatgtaaaaaatcattaatttaagat-gggtgaatatgcaaataataaaa 5098326  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||  ||| |||||||||||||||    
T  5098327 tacttgttaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatagaaacttttgattggtttgg 5098407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 39755220 - 39755381
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  39755220 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattcatttaaaatgaggtgaatatgcaaataataaaa 39755319  T
Q  110 tacgtgatttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttg 185  Q
    |              |||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  39755320 t--------------aaataaaataataaatgttattattctaatggagtacacatgaaaacttttaattggtttg 39755381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 24059110 - 24059262
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgt--aaaaaatcattaatttaagatggggtgaatatgcaaataataa 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  24059110 ttggagagtgatttgattagaggtgaaatttaattattgtgatggcttaaattgtaaaaaaaatcattaatttaagatggggtgaatatgcaaataataa 24059209  T
Q  108 aatacgtg----atttttgcaaaataagataataaatgttattattctaatggagta 160  Q
    ||||| ||    |||| |||||||||| ||    |||||||||||||||||||||||    
T  24059210 aatacttgctaaatttctgcaaaataaaat----aatgttattattctaatggagta 24059262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 5094291 - 5094165
Alignment:
Q  64 taaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataagataataaatgttattattctaatggagt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||||| ||||||||||||||||||||||||||||    
T  5094291 taaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacatgctaaatttttgcaaaataaaataataaatgttattattctaatggagt 5094192  T
Q  160 atacatgaaaatttttgattggtttgg 186  Q
    | ||||| ||| ||||||||| |||||    
T  5094191 acacatggaaaattttgattgatttgg 5094165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 44185270 - 44185449
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44185270 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 44185369  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttg 185  Q
    ||  ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  44185370 tatttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatgaaaacttttgattagtttg 44185449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 37982168 - 37982344
Alignment:
Q  13 gagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatac 112  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37982168 gagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagat-gggtgaatatgcaaataataaaatac 37982266  T
Q  113 gtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
     ||    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  37982267 atgctaaatttttgcaaaataaaataataaatgttattattctaatggagtatacatggaaaattttgattggtttgg 37982344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 3808809 - 3808978
Alignment:
Q  20 attggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg---- 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||        
T  3808809 attggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggcgaatatgcaaataataaaatacatgttaa 3808908  T
Q  116 atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttg 185  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  3808909 atttttgcaaaataaaataataaatgttattattctaatggagtacacatgaaattttttgattggtttg 3808978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 3805397 - 3805237
Alignment:
Q  30 aggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    ||||||||||    
T  3805397 aggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagacggggtgaatatgcaaataataaaatacttgctaaatttttgcaa 3805298  T
Q  126 aataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| | ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  3805297 aattaaataataaatgttattattctaatggagtacacatggaaacttttgattggtttgg 3805237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 37975014 - 37974856
Alignment:
Q  33 tgaaatttaattattgtgatggtttaaattgtaaaaaa-tcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaa 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||    
T  37975014 tgaaatttaattattgtgatggtttaaattgtaaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacttgctaaatttttgcaaaa 37974915  T
Q  128 taagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  37974914 taaaataataaatgttattattctaatggagtacacatggaaacttttgattggtttgg 37974856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 44174870 - 44174729
Alignment:
Q  48 gtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataagataataaatgtt 143  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||    ||||||||||||||| ||||||||||||    
T  44174870 gtgatggtttaaattgtaaaaaatcatta-tttaagatggggtgaatatgcaaataataaaatatttgctaaatttttgcaaaataaaataataaatgtt 44174772  T
Q  144 attattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||    
T  44174771 attattctaatggagtacacatggaaaattttgattggtttgg 44174729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 44181570 - 44181429
Alignment:
Q  48 gtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataagataataaatgtt 143  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||    ||||||||||||||| ||||||||||||    
T  44181570 gtgatggtttaaattgtaaaaaatcatta-tttaagatggggtgaatatgcaaataataaaatatttgctaaatttttgcaaaataaaataataaatgtt 44181472  T
Q  144 attattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||    
T  44181471 attattctaatggagtacacatggaaaattttgattggtttgg 44181429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 44174711 - 44174590
Alignment:
Q  68 aaatcattaatttaagatggggtgaatatgcaaataataaaatacgtgat---ttttgcaaaataagataataaatgttattattctaatggagtataca 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |   ||||||||||||| ||||||||| ||||||||||||||||||| |||    
T  44174711 aaatcattaatttaagatggggtgaatatgcaaataataaaatacatgctaaattttgcaaaataaaataataaatattattattctaatggagtacaca 44174612  T
Q  165 tgaaaatttttgattggtttgg 186  Q
    || ||| |||||||||||||||    
T  44174611 tggaaaattttgattggtttgg 44174590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 44181411 - 44181290
Alignment:
Q  68 aaatcattaatttaagatggggtgaatatgcaaataataaaatacgtgat---ttttgcaaaataagataataaatgttattattctaatggagtataca 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |   ||||||||||||| ||||||||| ||||||||||||||||||| |||    
T  44181411 aaatcattaatttaagatggggtgaatatgcaaataataaaatacatgctaaattttgcaaaataaaataataaatattattattctaatggagtacaca 44181312  T
Q  165 tgaaaatttttgattggtttgg 186  Q
    || ||| |||||||||||||||    
T  44181311 tggaaaattttgattggtttgg 44181290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 40325705 - 40325883
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgt-aaaaaatcattaatttaagatggggtgaatatgcaaataataaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40325705 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 40325804  T
Q  109 atacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtt 183  Q
    |||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  40325805 atacttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatgaaaacttttgattggtt 40325883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 40322175 - 40322002
Alignment:
Q  15 gagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgt 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40322175 gagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacat 40322076  T
Q  115 g----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggttt 184  Q
    |    ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  40322075 gctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatgaaaatttttgattggttt 40322002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 36216127 - 36216307
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36216127 ttggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 36216226  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||    ||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||| ||||||||| |||||    
T  36216227 tacatgctaaatttttgcaaaataaaataataaatattattattctaatagagtacacatgaaaaattttgattgatttgg 36216307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 2387165 - 2387342
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2387165 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 2387264  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
    | ||    ||||||||||||||| ||||||||| |||||||||  |||||||| ||||| ||| ||||||||||||||||    
T  2387265 catgctaaatttttgcaaaataaaataataaatattattattc--atggagtacacatggaaaattttgattggtttgga 2387342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 2381863 - 2381717
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381863 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 2381764  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattcta 152  Q
    ||| ||    ||||||||||||||| |||||||||||||||||||||    
T  2381763 tacttgctaaatttttgcaaaataaaataataaatgttattattcta 2381717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 8264724 - 8264581
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8264724 ttggagagtgattggattagaggggaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgtaaataataaaa 8264625  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattatt 149  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||    
T  8264624 tacatgctaaatttttgcaaaataaaataataaatgttattatt 8264581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 1577225 - 1577284
Alignment:
Q  49 tgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||| |||||| |||||||  ||||||||||||| |||| ||||||| ||||||||||||    
T  1577225 tgatgatttaaaatgtaaaatgtcattaatttaag-tgggatgaatatacaaataataaaa 1577284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 50998027 - 50998206
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50998027 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 50998126  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
    | ||    ||||||||||||||| |||||||||||||||||||||||||||||  |||| |||||||| |||||||||||    
T  50998127 catgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacgcatggaaattttttattggtttgga 50998206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 22158789 - 22158611
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22158789 ttggagagtgattgaattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatagggtgaatatgcaaataataaaa 22158690  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggttt 184  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  22158689 tacttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaacttttgattggttt 22158611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 25920405 - 25920225
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25920405 ttggagagttattagattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaattattaatttaagatggggtgaatatgcaaataataaaa 25920306  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  25920305 tacttgctaaatttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaacttttgattggtttgg 25920225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 45698445 - 45698270
Alignment:
Q  15 gagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgt 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45698445 gagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacat 45698346  T
Q  115 g----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    |    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||    
T  45698345 gctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatgaaaaattttgattgatttgg 45698270  T

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Target: chr4; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 25923050 - 25923227
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  25923050 ttggagagtgattggattagaggagaaatttaattattgtgatggtttaaattataaaaaatcattaatttaagat-gggtgaatatgcaaataataaaa 25923148  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggttt 184  Q
    ||| ||    ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  25923149 tacatgctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatgaaattttttgattggttt 25923227  T

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Target: chr4; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 23314343 - 23314163
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314343 ttggggagtgattggattagaggtgaaatttaattagtgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 23314244  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaa-tttttgattggtttg 185  Q
    ||| ||    ||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||  ||||||||||||||    
T  23314243 tacttgctaaatttttgcaaaataaaataataaatattattattctaatagagtacacatgaaaaccttttgattggtttg 23314163  T

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Target: chr4; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 23317922 - 23318095
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  23317922 ggagagtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatca-----ttaagatggggtgaatatgcaaataataaaata 23318016  T
Q  112 cgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    | ||    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||| ||||||||| |||||    
T  23318017 catgctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatggaaaattttgattgatttgg 23318095  T

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Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 54397701 - 54397547
Alignment:
Q  35 aaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataa 130  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||  ||    |||||||||||||||    
T  54397701 aaatttaattattgtgatagtttaaattgtaaaaaatcattaatttaagatggagtaaatatgcaaataataaattatttgctaaatttttgcaaaataa 54397602  T
Q  131 gataataaatgttattattctaatggagtatacatgaaaatttttgattggtttg 185  Q
     ||||||||| |||||||||||||| ||||  |||||||| |||||||| |||||    
T  54397601 aataataaatattattattctaatgaagtaggcatgaaaacttttgattagtttg 54397547  T

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Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 51754664 - 51754770
Alignment:
Q  85 tggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattg 180  Q
    |||||||||||||||||||||||||||| ||    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||| |||||||||    
T  51754664 tggggtgaatatgcaaataataaaatacatgctaaatttttgcaaaataaaataataaatattattattctaatggagtacacatggaaaattttgattg 51754763  T
Q  181 gtttgga 187  Q
     ||||||    
T  51754764 atttgga 51754770  T

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Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 51754538 - 51754468
Alignment:
Q  116 atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  51754538 atttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaacttttgattggtttgg 51754468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 43433575 - 43433647
Alignment:
Q  31 ggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaata 103  Q
    ||||||||  ||||| | ||||||| ||||||||||||  |||||||||||| ||||||||||||||||||||    
T  43433575 ggtgaaatcaaattaatttgatggtgtaaattgtaaaatgtcattaatttaaaatggggtgaatatgcaaata 43433647  T

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Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 13845215 - 13845036
Alignment:
Q  10 ttggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13845215 ttggagagtgattggattagaggtgaaatttaattattgtga-ggtttaaattgtaaaaaatcattaatttaagatggggcgaatatgcaaataataaaa 13845117  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||| ||    ||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||    
T  13845116 tacttgctatatttttgcaaaataaaataataaatgttattattttaatggagtacacatggaaacttttgattggtttgg 13845036  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 13848902 - 13848972
Alignment:
Q  116 atttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgg 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  13848902 atttttgcaaaataaaataataaatgttattattctaatggagtacacatggaaaattttgattggtttgg 13848972  T

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Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 8026712 - 8026541
Alignment:
Q  12 ggagagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaata 111  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||    | ||     
T  8026712 ggagagtgattggattagaggagaaatttaattattacgatggtttaaattgtaaataatcattaatttaagatggggtgaatatgcaaat----acatg 8026617  T
Q  112 cgtgatttttgcaaaataagataataaatgttattattctaatggagtatacatgaaaatttttgattggtttgga 187  Q
    |   ||||||||||||||| ||||||||| |||||||||||||||| || ||||||||| ||||||||||| ||||    
T  8026616 ctaaatttttgcaaaataaaataataaatattattattctaatggaatacacatgaaaaattttgattggtgtgga 8026541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 8272337 - 8272153
Alignment:
Q  14 agagtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaa----ataataaaa 109  Q
    ||||| ||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||    ||||| |||    
T  8272337 agagtaattggattagaggagaaatttaaataatgtgatggtttaaattgtaaaacatcattaatttaaaatggggtaaatatgcaaatatataatgaaa 8272238  T
Q  110 tacgtg----atttttgcaaaataagataataaatgttattattctaatgg---agtatacatgaaaatttttgattggtttgga 187  Q
    ||| ||    ||||||||||||||||||||||||| | |||||||||||||   |||| ||||| ||| ||||||||||||||||    
T  8272237 tacatgttaaatttttgcaaaataagataataaatatgattattctaatggagtagtacacatggaaaattttgattggtttgga 8272153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 25644681 - 25644564
Alignment:
Q  73 attaatttaagatggggtgaatatgcaaataataaaatacgtg----atttttgcaaaataagataataaatgttattattctaatggagtatacatgaa 168  Q
    ||||||||||||||||| |||||||||||||||||||||| ||    ||||||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  25644681 attaatttaagatggggggaatatgcaaataataaaatacttgctaaatttttgcaaaataaaataataaatgttattattctaatgaagtacacatgaa 25644582  T
Q  169 aatttttgattggtttgg 186  Q
    || |||||||||||||||    
T  25644581 aacttttgattggtttgg 25644564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 21826237 - 21826345
Alignment:
Q  40 taattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg--atttttgcaaaataagataata 137  Q
    |||||| | ||||| ||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||| ||  | | ||| ||||||| ||||||    
T  21826237 taattaatttgatgatttaaattgtaaaatgacattaatttaaaatggggtgaatatgcaaataataaaatacatgctaatattgtaaaataaaataata 21826336  T
Q  138 aatgttatt 146  Q
    ||| |||||    
T  21826337 aattttatt 21826345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 6547 - 6439
Alignment:
Q  40 taattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaaatacgtg--atttttgcaaaataagataata 137  Q
    |||||| | ||||| ||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||| ||  | | ||| ||||||| ||||||    
T  6547 taattaatttgatgatttaaattgtaaaatgacattaatttaaaatggggtgaatatgcaaataataaaatacatgctaatattgtaaaataaaataata 6448  T
Q  138 aatgttatt 146  Q
    ||| |||||    
T  6447 aattttatt 6439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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