View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11828_low_4 (Length: 609)

Name: NF11828_low_4
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11828_low_4
NF11828_low_4
[»] chr2 (15 HSPs)
chr2 (20-525)||(18025561-18026071)
chr2 (189-462)||(29395383-29395656)
chr2 (199-462)||(6892780-6893043)
chr2 (189-379)||(25342123-25342309)
chr2 (272-430)||(3221442-3221600)
chr2 (211-355)||(3216584-3216728)
chr2 (189-284)||(25345456-25345551)
chr2 (310-379)||(25346606-25346675)
chr2 (349-419)||(3217001-3217071)
chr2 (20-81)||(17231308-17231369)
chr2 (285-420)||(21473132-21473268)
chr2 (285-422)||(33457968-33458103)
chr2 (81-159)||(25342319-25342402)
chr2 (285-342)||(34478619-34478675)
chr2 (82-168)||(29395657-29395748)
[»] chr3 (9 HSPs)
chr3 (82-462)||(37494395-37494769)
chr3 (204-461)||(26569730-26569987)
chr3 (184-447)||(9688932-9689194)
chr3 (203-462)||(11992814-11993071)
chr3 (285-354)||(39759754-39759822)
chr3 (285-345)||(43823144-43823203)
chr3 (286-354)||(53286059-53286126)
chr3 (286-364)||(2993565-2993642)
chr3 (121-168)||(26569676-26569723)
[»] scaffold0004 (1 HSPs)
scaffold0004 (82-491)||(35548-35950)
[»] chr5 (11 HSPs)
chr5 (189-489)||(34113845-34114145)
chr5 (84-458)||(34091636-34092018)
chr5 (189-411)||(40941446-40941662)
chr5 (235-490)||(31204839-31205091)
chr5 (297-434)||(40539379-40539515)
chr5 (285-490)||(41992706-41992908)
chr5 (81-159)||(34113752-34113835)
chr5 (286-352)||(17731562-17731627)
chr5 (286-345)||(37369318-37369376)
chr5 (86-126)||(18528372-18528412)
chr5 (334-389)||(35000432-35000488)
[»] chr6 (7 HSPs)
chr6 (189-489)||(8365910-8366210)
chr6 (194-376)||(20771778-20771960)
chr6 (347-489)||(20771959-20772101)
chr6 (82-163)||(20771686-20771767)
chr6 (297-389)||(16502251-16502343)
chr6 (286-420)||(11843628-11843763)
chr6 (285-345)||(3288170-3288229)
[»] chr4 (19 HSPs)
chr4 (189-489)||(56290421-56290716)
chr4 (181-426)||(46203688-46203933)
chr4 (285-368)||(11945166-11945248)
chr4 (297-368)||(11945076-11945146)
chr4 (286-368)||(44420641-44420721)
chr4 (297-366)||(28623760-28623828)
chr4 (116-168)||(56290368-56290420)
chr4 (285-353)||(2469352-2469419)
chr4 (285-345)||(41055147-41055206)
chr4 (285-345)||(55682407-55682466)
chr4 (285-348)||(374617-374679)
chr4 (285-489)||(7199630-7199831)
chr4 (303-348)||(48236499-48236543)
chr4 (285-345)||(37517128-37517187)
chr4 (285-345)||(37521344-37521403)
chr4 (402-489)||(48197281-48197363)
chr4 (285-348)||(49812045-49812107)
chr4 (81-130)||(28624011-28624060)
chr4 (286-354)||(13763217-13763284)
[»] chr8 (9 HSPs)
chr8 (82-411)||(23003837-23004146)
chr8 (194-377)||(18952494-18952678)
chr8 (313-462)||(20189724-20189870)
chr8 (230-382)||(1089840-1089991)
chr8 (181-486)||(18964684-18964994)
chr8 (297-432)||(12524887-12525021)
chr8 (285-345)||(38567737-38567796)
chr8 (82-130)||(12524657-12524705)
chr8 (306-366)||(26278643-26278702)
[»] scaffold0311 (1 HSPs)
scaffold0311 (81-383)||(1186-1487)
[»] chr7 (14 HSPs)
chr7 (204-432)||(46841834-46842062)
chr7 (116-384)||(31379866-31380136)
chr7 (313-462)||(44274236-44274382)
chr7 (80-168)||(42772777-42772865)
chr7 (297-394)||(13096287-13096384)
chr7 (290-368)||(36828168-36828244)
chr7 (285-345)||(11591844-11591903)
chr7 (286-368)||(34500035-34500118)
chr7 (285-345)||(43614160-43614219)
chr7 (285-345)||(46066866-46066925)
chr7 (285-345)||(33516112-33516171)
chr7 (286-346)||(37068425-37068484)
chr7 (285-353)||(48827204-48827271)
chr7 (86-161)||(32788577-32788657)
[»] chr1 (13 HSPs)
chr1 (297-491)||(3967793-3967986)
chr1 (306-489)||(41012658-41012840)
chr1 (287-368)||(8114512-8114592)
chr1 (285-489)||(52539691-52539894)
chr1 (336-411)||(34570758-34570833)
chr1 (81-130)||(41013010-41013059)
chr1 (286-368)||(3170373-3170453)
chr1 (285-345)||(20993654-20993713)
chr1 (285-348)||(42871965-42872028)
chr1 (285-345)||(52004506-52004565)
chr1 (206-244)||(34570713-34570751)
chr1 (285-354)||(28198360-28198428)
chr1 (286-354)||(126120-126187)
[»] scaffold0534 (1 HSPs)
scaffold0534 (80-168)||(10861-10949)
[»] scaffold0044 (1 HSPs)
scaffold0044 (286-368)||(83725-83806)
[»] scaffold0368 (1 HSPs)
scaffold0368 (285-348)||(8560-8623)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Complemental strand, 18026071 - 18025561
Alignment:
Q  20 cttgtgatagttgatttctaaagcttttagtgaattcttttccatgaatgactggtagtagcctctgttgtcaatagcggccgcgctgaccgctatagcg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||    
T  18026071 cttgtgatagttgatttctaaagcttttagtgaattcttttccatgaatgactggtagtagcctctgttttcaatagcggccgtgctgactgctatagcg 18025972  T
Q  120 gagcgga-----aaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcacgtgccaaaagttgaaaacggccaaagcgaacct 214  Q
    |||||||     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18025971 gagcggagcggaaaaatcaggaccgccgcaccaggccgcgtcggcgcgtctcaggcggtgtcagcacgtgtcaaaagttgaaaacggccaaagcgaacct 18025872  T
Q  215 ataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataaatacttcatga 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18025871 ataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgattttgcaatcccttttatttcatattataaatacttcatga 18025772  T
Q  315 aattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaaatagcgcctgc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  18025771 aattttgagtaatgcttaaggtattttagtatttctttttgaatagtatcgtatctagtattaaatttattagtggccgcactaccaaaatagtgcctgc 18025672  T
Q  415 tacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacagaggtagtagctatgaagttgattttac 514  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18025671 tacgcgccccgctcccgcattgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacagaggtagtagctatgaagttgattttac 18025572  T
Q  515 cgcgatcccgt 525  Q
    |||||||||||    
T  18025571 cgcgatcccgt 18025561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 189 - 462
Target Start/End: Complemental strand, 29395656 - 29395383
Alignment:
Q  189 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 288  Q
    |||| |||| ||||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  29395656 aagtggaaagcggccaaaatggacctataaatagtaaaacaataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttt 29395557  T
Q  289 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagt 388  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| | |||||||||||||| |||    
T  29395556 tatttcatattatgaatacttcatgaaattttgagtaatgtttaaggtattttagtatttctctttggatagtatggtaccaagtattaaatttattagt 29395457  T
Q  389 ggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccg 462  Q
    |||| ||| ||| ||| |||||  ||||||||||||||||||||||   ||||||||||| |||||||||||||    
T  29395456 ggccgcaccaccgaaaaagcgcacgctacgcgccccgctcccgcaccccgccaattattgggttggccgcgccg 29395383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 199 - 462
Target Start/End: Original strand, 6892780 - 6893043
Alignment:
Q  199 cggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatat 298  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||| ||||||| ||||||||||||||||||    
T  6892780 cggccaaagcggacctataaatagtaaaacaaaaacttgtactagttgtatataactagtattagccattttcaattttgctatcccttttatttcatat 6892879  T
Q  299 tataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacacta 398  Q
     || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |    
T  6892880 gatgaatacttcatgaaattttgagtaatgtttaaggtattttagtatttctttttgaataatatggtatctagtattaaatttattagtggccacacca 6892979  T
Q  399 ccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccg 462  Q
    || |||||||||| ||    ||||||||||| |||| | ||||||||||| |||||||||||||    
T  6892980 ccgaaatagcgcccgcacaacgccccgctcctgcaccgcgccaattattgggttggccgcgccg 6893043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 189 - 379
Target Start/End: Complemental strand, 25342309 - 25342123
Alignment:
Q  189 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 288  Q
    |||| |||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||    
T  25342309 aagtggaaagcggccaaagcggac-tataaatactataacaataacttgtactagttgtatataattggtattattcattttcgattttgctatcccttt 25342211  T
Q  289 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaa 379  Q
    ||||||||||||| ||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25342210 tatttcatattatgaata---catgaaattttgagtaatgtttaaggtattttagtatttctttttgaatagtatggtatctagtattaaa 25342123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 3221600 - 3221442
Alignment:
Q  272 gattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatcta 371  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  3221600 gattttgctatcccttttatttcatattatgaatacttcatgaaactttgagtaatgtttaaggtattttagtatttctttttgaatagtatggtattta 3221501  T
Q  372 gtattaaatttatcagtggccacactaccaaaatagcgcctgctacgcgccccgctccc 430  Q
    ||||||||||||  ||||||||||| ||| ||| |||||||||||||| || |||||||    
T  3221500 gtattaaatttaatagtggccacacaaccgaaacagcgcctgctacgcaccacgctccc 3221442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 3216584 - 3216728
Alignment:
Q  211 acctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataaatacttc 310  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  ||| ||| ||| |||||||||| ||||||||||||||||||||| ||||||||    
T  3216584 acctataaatagtaaaacgataacttgtactagttgtatataattcttattagcgattatcgattttgctatcccttttatttcatattatgaatacttc 3216683  T
Q  311 atgaaattttgagtaatgcttaaggtattttagtatttctttttg 355  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||    
T  3216684 atgaaactttgagtaatgtttaaggtattttggtatttctttttg 3216728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 25345456 - 25345551
Alignment:
Q  189 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcc 284  Q
    |||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  25345456 aagtggaaagcggccaaagcggacctataaatagtataacaataacttgtactagttgtatataattggtattagccattttcgattttgctatcc 25345551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 25346675 - 25346606
Alignment:
Q  310 catgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaa 379  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25346675 catgaaattttgagtaatgtttaaggtattttagtatttctttttgaatagtatggtatctagtattaaa 25346606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 3217001 - 3217071
Alignment:
Q  349 ctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaaatagcgcctgctacgc 419  Q
    ||||| |||||||||||||| ||||||||||||||| ||||| ||||| ||| ||| ||||||||||||||    
T  3217001 cttttagaatagtatggtatttagtattaaatttattagtggtcacaccaccgaaacagcgcctgctacgc 3217071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 17231308 - 17231369
Alignment:
Q  20 cttgtgatagttgatttctaaagcttttagtgaattcttttccatgaatgactggtagtagc 81  Q
    ||||||||| ||||||||||||||| |||||||||||||||  ||||||||||| |||||||    
T  17231308 cttgtgatatttgatttctaaagctgttagtgaattcttttggatgaatgactgatagtagc 17231369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 420
Target Start/End: Original strand, 21473132 - 21473268
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttcttttt-gaatagtatggta-tctagtattaaattt 382  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| | | ||||||||||||||| |||||  || | ||| ||| | || |||||||| |    
T  21473132 cttttatttcagattaggaatacttcatgaa-ttttgagtaatgttaatggtattttagtatttttttttccaacaatatagtattttaatattaaatat 21473230  T
Q  383 atcagtggccacactaccaaaatagcgcctgctacgcg 420  Q
    || |||| || ||| |||||||||||||||||||||||    
T  21473231 attagtgtccgcaccaccaaaatagcgcctgctacgcg 21473268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 422
Target Start/End: Complemental strand, 33458103 - 33457968
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggta-tctagtattaaattta 383  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||| |  ||||| || ||||| ||| | || |||||||| ||    
T  33458103 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagtaat--ttttttaacagtatagtattttaatattaaatata 33458007  T
Q  384 tcagtggccacactaccaaaatagcgcctgctacgcgcc 422  Q
    |||||| || |   ||| |||||||||| ||||||||||    
T  33458006 tcagtgtccgcgtcaccgaaatagcgcccgctacgcgcc 33457968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 25342402 - 25342319
Alignment:
Q  81 cctctgttgtcaatagcggccgcgctgaccgctatagcggagcg-----gaaaaatcaggaccgccgcaccaggccacgtcggc 159  Q
    ||||||||||||| |||||||||||   |||||| |||||||||     |||||||||||||| |||||||||||| |||||||    
T  25342402 cctctgttgtcaaaagcggccgcgccagccgctacagcggagcgtagtggaaaaatcaggaccaccgcaccaggccgcgtcggc 25342319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 34478675 - 34478619
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtatttta 342  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||    
T  34478675 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtatttta 34478619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 29395748 - 29395657
Alignment:
Q  82 ctctgttgtcaatagcggccgcgctgaccgctata-----gcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 168  Q
    ||||||| |||||||||||||||| | |||||| |     |||||||||||||||||  ||| |||||||||||| |||||||| || ||||    
T  29395748 ctctgttatcaatagcggccgcgccggccgctacaccagagcggagcggaaaaatcaataccaccgcaccaggccgcgtcggcgtgtgtcag 29395657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 82 - 462
Target Start/End: Complemental strand, 37494769 - 37494395
Alignment:
Q  82 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcac 181  Q
    ||||||||||||||||||||||||  || |||||||     |||||||||||||||| ||||||||||||| ||||||||||||||||| | | |||| |    
T  37494769 ctctgttgtcaatagcggccgcgccaactgctatag-----cggaaaaatcaggaccaccgcaccaggccatgtcggcgcgtctcaggccgcgacagcgc 37494675  T
Q  182 gtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaa 281  Q
    ||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |    
T  37494674 gtgtcaaaagttgaaagcggccaaagcggacctataaatagtaaaacaataacttgtactggttgtatataattggtattagccattttcgattttgcta 37494575  T
Q  282 tcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatt 381  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37494574 tcccttttatttcatattatgaatacttcatgaaattttgagtaatgtttaaggtattttagtatttctttttg-atagtatggtatctagtattaaatt 37494476  T
Q  382 tatcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccg 462  Q
    ||||||||||||| ||| | ||||||||||  |||| |||||||||||||||| | |||||||||||||||||||||||||    
T  37494475 tatcagtggccacgctaacgaaatagcgcccactacccgccccgctcccgcaccgcgccaattattgagttggccgcgccg 37494395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 204 - 461
Target Start/End: Original strand, 26569730 - 26569987
Alignment:
Q  204 aaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataa 303  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||  || |||||||||||||| ||||||||||||||||||||| |    
T  26569730 aaagcggacctataaatagtaaaacaataacttgtactggttgtatataattggtattggctattttcgattttgctatcccttttatttcatattatga 26569829  T
Q  304 atacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaa 403  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||  || ||    
T  26569830 atacttcatgaaattttgagtaatgtttaaggtattttagtatttctttttgagtagtatggtatctattattaaatttattagtggccgcaccgccgaa 26569929  T
Q  404 atagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgcc 461  Q
    |||||||| ||||||  |||||||||||||| ||||||||||||| ||||| ||||||    
T  26569930 atagcgcccgctacgtaccccgctcccgcaccgtgccaattattgggttggtcgcgcc 26569987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 184 - 447
Target Start/End: Complemental strand, 9689194 - 9688932
Alignment:
Q  184 gccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatc 283  Q
    ||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||     
T  9689194 gccaaaagtggaaagcggccaaagcggacctataaatagtaaatcaataacttgtactagttgtatataattggtattagccatttttgattttgctatt 9689095  T
Q  284 ccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaattta 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||  ||||||||| ||||||||||||    
T  9689094 ccttttatttcatattatgaatacttcatgaaattttgagtaatgattaaggtattttgctatttctttttgaataaaatggtatct-gtattaaattta 9688996  T
Q  384 tcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattatt 447  Q
    | ||||| | ||| |||||||||||||| ||||||||||||||||| |||| | ||||||||||    
T  9688995 ttagtggtcgcaccaccaaaatagcgcccgctacgcgccccgctcctgcaccgcgccaattatt 9688932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 203 - 462
Target Start/End: Complemental strand, 11993071 - 11992814
Alignment:
Q  203 caaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattata 302  Q
    ||||||| ||||||  |||||||||| ||||||||||||| |||||||| |||| ||| ||| |||||||||||||| ||||| |||||||||||||||     
T  11993071 caaagcggacctatcgatagtaaaacgataacttgtactaattgtatatgattgttattagcgattttcgattttgctatcccatttatttcatattatg 11992972  T
Q  303 aatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaa 402  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||  ||| ||| |    
T  11992971 aatacttcaagaaattttgagtaatgtttaaggtattttagtatttctttttgaatagtatggtatttagtattatatttattagtggc--caccaccga 11992874  T
Q  403 aatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccg 462  Q
    |||||| || ||||||| ||| |||||||||| | ||||||| ||| |||||| ||||||    
T  11992873 aatagcccccgctacgcaccctgctcccgcaccgcgccaatttttgggttggctgcgccg 11992814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 39759754 - 39759822
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttcttttt 354  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||| || |||||    
T  39759754 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagtaatttttttt 39759822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 43823203 - 43823144
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  43823203 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 43823144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 53286126 - 53286059
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttcttttt 354  Q
    |||||||||| ||||  ||||||| ||||| |||||||||||| ||||||||||||||||||| |||||    
T  53286126 ttttatttcaaattaagaatacttaatgaa-ttttgagtaatgtttaaggtattttagtattttttttt 53286059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 2993642 - 2993565
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatg 364  Q
    |||||||||| || || |||||||||| |||||| |||||||  ||||||||||||||||| | |||||| ||||||||    
T  2993642 ttttatttcaaatcatgaatacttcataaaattt-gagtaatatttaaggtattttagtatatttttttgtatagtatg 2993565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 26569676 - 26569723
Alignment:
Q  121 agcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 168  Q
    |||||||||||||||||| |||||||||||| |||||| |||| ||||    
T  26569676 agcggaaaaatcaggaccaccgcaccaggccgcgtcggtgcgtgtcag 26569723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 82 - 491
Target Start/End: Complemental strand, 35950 - 35548
Alignment:
Q  82 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcac 181  Q
    ||||||||||||||| |||||||| |||||||||||||||     |||||||||||| ||| ||||| || ||||||||||| |||||| | ||| ||      
T  35950 ctctgttgtcaatagtggccgcgccgaccgctatagcgga-----aaaatcaggaccaccgtaccagaccgcgtcggcgcgtgtcaggccgcgtcggcct 35856  T
Q  182 gtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaa 281  Q
    ||| ||||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |    
T  35855 gtgtcaaaagtggaaagtggccaaagcggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagcgattttcgattttgcta 35756  T
Q  282 tcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatt 381  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  35755 tcccttttatttcatattatgaatacttcatgaaattttgagtaatgtttaaggtattttagtatt--ttttttaatagtatggtatctagtattaaatt 35658  T
Q  382 tatcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattga 481  Q
    ||| ||||||  ||| ||| |||||||  | |||||| ||||||||||||||| | ||||||||||||||||||||||  | |||  |||||||||||||    
T  35657 tattagtggctgcacaaccgaaatagcatccgctacgtgccccgctcccgcaccgcgccaattattgagttggccgcgatgcgccgcatttccgcattga 35558  T
Q  482 caacagaggt 491  Q
    ||||||||||    
T  35557 caacagaggt 35548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 189 - 489
Target Start/End: Original strand, 34113845 - 34114145
Alignment:
Q  189 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 288  Q
    |||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  34113845 aagtggaaagcggccaaagtggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttt 34113944  T
Q  289 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagt 388  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34113945 tatttcatattatgaatacatcatgaaattttgagtaatgtttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttattagt 34114044  T
Q  389 ggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacaga 488  Q
    |||||||| ||| |||||||||| ||||||||||| ||||||||||   ||||||||||  ||||||| |||| ||||  ||||||||||| ||||||||    
T  34114045 ggccacaccaccgaaatagcgcccgctacgcgccctgctcccgcaccacgccaattattaggttggccacgccatgccgcatttccgcattcacaacaga 34114144  T
Q  489 g 489  Q
    |    
T  34114145 g 34114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 84 - 458
Target Start/End: Complemental strand, 34092018 - 34091636
Alignment:
Q  84 ctgttgtcaatagcggccgcgctgaccgctatagcggagc-----ggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcag 178  Q
    ||||||||||||||||||| ||   |||||||||||||||     ||||||||||||||  |||||||||||| |||||||| || |||||| | ||| |    
T  34092018 ctgttgtcaatagcggccgtgcctgccgctatagcggagcagagcggaaaaatcaggacaaccgcaccaggccgcgtcggcgtgtgtcaggctgcgtcgg 34091919  T
Q  179 cacgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataat---tggtatcagccattttcgatt 275  Q
    | |||| || |||  |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  34091918 cgcgtgtcagaagcggaaagcagccaaagcggacctataaatagtaaaacaataacttgtactagttgtatataataattggtattagccattttcgatt 34091819  T
Q  276 ttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtat 375  Q
    |||| ||||||||||||||||||||| |||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34091818 ttgctatcccttttatttcatattatgaatacttcatgaacatttaagtaatgtttaaggtattttagtatttctttttgaatagtatggtatctagtat 34091719  T
Q  376 taaatttatcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgc 458  Q
    ||||||||| ||||||  ||| ||| |||||| ||| ||||||| |||| ||||||||| ||||||||||||| |||||||||    
T  34091718 taaatttattagtggctgcaccaccgaaatagtgcccgctacgcaccccactcccgcaccgtgccaattattgggttggccgc 34091636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 189 - 411
Target Start/End: Complemental strand, 40941662 - 40941446
Alignment:
Q  189 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 288  Q
    |||| |||| ||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||    
T  40941662 aagtggaaagcggtcaaagcggacccatcaatagtaaaacaataacttgtactagttgtatataattggtattagcgatttttgattttgctatcccttt 40941563  T
Q  289 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagt 388  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||      |||| ||||||||||||||| |||    
T  40941562 tatttcatattatgaatacttaatgaaattttgagtaatgtttaaggtattttagtatttctttttgaat------gtatttagtattaaatttattagt 40941469  T
Q  389 ggccacactaccaaaatagcgcc 411  Q
    |||| ||| ||| ||||||||||    
T  40941468 ggccccaccaccgaaatagcgcc 40941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 235 - 490
Target Start/End: Complemental strand, 31205091 - 31204839
Alignment:
Q  235 ttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaag 334  Q
    ||||||||||||||||||||||||||  || |||||| ||||||| |||| ||||||||||||| |   ||||||||||||||||||||||||  |||||    
T  31205091 ttgtactagttgtatataattggtattggctattttcaattttgctatcctttttatttcatatga---atacttcatgaaattttgagtaatatttaag 31204995  T
Q  335 gtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcac 434  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||  |||||||||| ||||||| | | ||||||||||    
T  31204994 gtatttttgcatttctttttgaatagtatggtatttagtattaaatttattagtggccacaccactgaaatagcgcccgctacgcactctgctcccgcac 31204895  T
Q  435 tgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacagagg 490  Q
        |||||| ||  ||||||||| | | |||| ||||  ||||||||||||||||    
T  31204894 cactccaatttttttgttggccgctctgcgccacatttttgcattgacaacagagg 31204839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 297 - 434
Target Start/End: Complemental strand, 40539515 - 40539379
Alignment:
Q  297 attataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggt-atctagtattaaatttatcagtggccaca 395  Q
    ||||| ||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||| | ||||||  | ||||||||||| |||||||| |  |     
T  40539515 attatgaatacttcatgaa-ttttaagtaatgtttaaggtattttagtatatctttttgaacaatatggtcttttagtattaaatatatcagtgtctgcg 40539417  T
Q  396 ctaccaaaatagcgcctgctacgcgccccgctcccgcac 434  Q
    | | |||||||||| | ||||| || |||||||||||||    
T  40539416 cca-caaaatagcgtccgctacacgacccgctcccgcac 40539379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 285 - 490
Target Start/End: Original strand, 41992706 - 41992908
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggta-tctagtattaaattta 383  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||| ||||||||||   ||||| || ||||| ||| | || |||||||| ||    
T  41992706 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggaattttagtat---ttttttaacagtatagtattttaatattaaatata 41992801  T
Q  384 tcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgaca 483  Q
    | |||| || |   ||| |||||||||| |||||||||||    ||||| | | | ||||| ||| | ||||||||||| |||  |||||||| ||||||    
T  41992802 ttagtgtccgcgtcaccgaaatagcgcccgctacgcgcccgcaccccgcgccgcgtcaatttttggggtggccgcgccgcgccgcatttccgctttgaca 41992901  T
Q  484 acagagg 490  Q
    |||||||    
T  41992902 acagagg 41992908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 34113752 - 34113835
Alignment:
Q  81 cctctgttgtcaatagcggccgcgctgaccgctat-----agcggagcggaaaaatcaggaccgccgcaccaggccacgtcggc 159  Q
    ||||||||||||| |||||||||||   |||||||     |||| |||||||||||||||||| |||||||||||| |||||||    
T  34113752 cctctgttgtcaaaagcggccgcgccagccgctatagcagagcgtagcggaaaaatcaggaccaccgcaccaggccgcgtcggc 34113835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 17731562 - 17731627
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttcttt 352  Q
    |||||||||| ||||| ||| ||||||||  |||||||||||| ||||| |||||||||||||||||    
T  17731562 ttttatttcaaattatgaatgcttcatgac-ttttgagtaatgtttaagatattttagtatttcttt 17731627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 37369376 - 37369318
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    |||||||||| ||||  ||||||||||||| |||| ||||||| ||||||||||||||||    
T  37369376 ttttatttcaaattaggaatacttcatgaa-ttttaagtaatgtttaaggtattttagta 37369318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 18528372 - 18528412
Alignment:
Q  86 gttgtcaatagcggccgcgctgaccgctatagcggagcgga 126  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  18528372 gttgtcaaaagcggccgcgctggccgctatagcggtgcgga 18528412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 35000432 - 35000488
Alignment:
Q  334 ggtattttagtatttctttttgaatagtatggta-tctagtattaaatttatcagtg 389  Q
    |||||||||||||||  ||||||||||||||||| | ||||||||||| ||| ||||    
T  35000432 ggtattttagtattttgttttgaatagtatggtattttagtattaaatatattagtg 35000488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 189 - 489
Target Start/End: Complemental strand, 8366210 - 8365910
Alignment:
Q  189 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 288  Q
    |||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  8366210 aagtggaaagcggccaaagtggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttt 8366111  T
Q  289 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagt 388  Q
    ||||||||||||| ||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8366110 tatttcatattatgaatacatcatgaaaatttaagtaatgtttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttattagt 8366011  T
Q  389 ggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacaga 488  Q
    |||||||| ||| |||||||||| ||||| ||||| |||||||||| | ||||||||||  ||||||||||||  |||  ||||||||||||||||||||    
T  8366010 ggccacaccaccgaaatagcgcccgctacacgccctgctcccgcaccgcgccaattattaggttggccgcgccacgccgcatttccgcattgacaacaga 8365911  T
Q  489 g 489  Q
    |    
T  8365910 g 8365910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 20771778 - 20771960
Alignment:
Q  194 gaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttattt 293  Q
    |||| ||||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  20771778 gaaagcggccaaaatggacctataaatagtaaaacaataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttttattt 20771877  T
Q  294 catattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtatt 376  Q
    |||||||| || |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||    
T  20771878 catattatgaaaacttcatgaaattttgagtaacatttaaggtattttagtatttctttttgaatagtatggtatcaagtatt 20771960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 347 - 489
Target Start/End: Original strand, 20771959 - 20772101
Alignment:
Q  347 ttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattat 446  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||| ||||||| |  |||||||||||||||||||||| | |||||||||    
T  20771959 ttctttttgaatagtatggtatcaagtattaaatttattagtggccgcaccaccgaaatagcacacgctacgcgccccgctcccgcaccgcgccaattat 20772058  T
Q  447 tgagttggccgcgccgtgccatatttccgcattgacaacagag 489  Q
    |  |||||  | |||| |||| |||||| ||||||||| ||||    
T  20772059 ttggttggttgtgccgcgccacatttccacattgacaatagag 20772101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 20771686 - 20771767
Alignment:
Q  82 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgt 163  Q
    ||||||||| |||||||||||| | | || |||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  20771686 ctctgttgttaatagcggccgcaccggccactatagcggagcgggaaaatcaagaccaccgcaccaggccacgtcggcgcgt 20771767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 16502343 - 16502251
Alignment:
Q  297 attataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggta-tctagtattaaatttatcagtg 389  Q
    ||||| ||||| ||||||| |||| |||| || |||||||||||||||||||||||||||| | ||||||| | ||||||||||| ||| ||||    
T  16502343 attatgaatacctcatgaa-ttttaagtattgtttaaggtattttagtatttctttttgaacaatatggtattttagtattaaatatattagtg 16502251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 420
Target Start/End: Original strand, 11843628 - 11843763
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttg-aatagtatggtatct-agtattaaattta 383  Q
    |||||||||| ||||  ||||||| ||||| |||||||||||| ||||||||||||||||||| |||||  || ||||  |||| | | |||||||| ||    
T  11843628 ttttatttcaaattaagaatacttaatgaa-ttttgagtaatgtttaaggtattttagtattttttttttcaacagtaaagtattttaatattaaatata 11843726  T
Q  384 tcagtggccacactaccaaaatagcgcctgctacgcg 420  Q
    | |||| || | | ||| |||||||||||||||||||    
T  11843727 ttagtgtccgcgcaaccgaaatagcgcctgctacgcg 11843763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 3288229 - 3288170
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||| ||||||    
T  3288229 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtatcttagta 3288170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 189 - 489
Target Start/End: Original strand, 56290421 - 56290716
Alignment:
Q  189 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 288  Q
    |||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  56290421 aagtggaaagcggccaaagtggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgatttttctatcccttt 56290520  T
Q  289 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagt 388  Q
    |||||||||||||||||| ||| ||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||     
T  56290521 tatttcatattataaatatttcttgaaactttgagtcatgtttaaggtattttagtatttcttttttaatagtatggtatctagtattaaatttattagc 56290620  T
Q  389 ggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacaga 488  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||| ||||      ||||||||||||||||||||    
T  56290621 ggccgcaccaccaaaatagcgcctgctacgcgccccgcccccgcaccgcgccaattattgggttggccgtgccgc-----atttccgcattgacaacaga 56290715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 181 - 426
Target Start/End: Original strand, 46203688 - 46203933
Alignment:
Q  181 cgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgca 280  Q
    |||| ||||||| ||||  |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||     
T  46203688 cgtgtcaaaagtggaaagaggccaaagcagacctataaatagtaaaacaataacttgtacaagttgtatataattggtattagccattttcgattttgct 46203787  T
Q  281 atcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaat 380  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46203788 atcccttttatttcatatgatgaatacttcatgtaattttgagtaacgtttaagttattttagtatttctttttgaatagtatggtatctagtattaaat 46203887  T
Q  381 ttatcagtggccacactaccaaaatagcgcctgctacgcgccccgc 426  Q
    |||| ||||||| ||| ||| |||||||||| ||  ||||||||||    
T  46203888 ttattagtggccgcaccaccgaaatagcgcccgcaccgcgccccgc 46203933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 285 - 368
Target Start/End: Complemental strand, 11945248 - 11945166
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtat 368  Q
    ||||||||||  ||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||| ||||    
T  11945248 cttttatttcgaattatgaatacttcatgaa-ttttgagtaatgtttaaggtattttagtatttgtttttgaacagtatagtat 11945166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 11945146 - 11945076
Alignment:
Q  297 attataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtat 368  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||| ||||    
T  11945146 attatgaatacttcatgaa-ttttgagtaatgtttaaggtattttagtatttgtttttgaacagtatagtat 11945076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 44420721 - 44420641
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtat 368  Q
    |||||||||| ||||| |||||||||| ||||||||||||||  ||||||||||||||||| | |||||| ||||||||||||    
T  44420721 ttttatttcaaattatgaatacttcat-aaattttgagtaatatttaaggtattttagtatat-tttttgtatagtatggtat 44420641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 366
Target Start/End: Complemental strand, 28623828 - 28623760
Alignment:
Q  297 attataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggt 366  Q
    ||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| | ||||||    
T  28623828 attatgaatacttcatgaa-ttttaagtaatgtttaaggtattttagtatttctttttgaacaatatggt 28623760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 56290368 - 56290420
Alignment:
Q  116 agcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 168  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  56290368 agcggagcggaaaaatcaggaccaccgcaccaggccgcgtcggcgcgtgtcag 56290420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 2469352 - 2469419
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttt 353  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  2469352 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaagatattttagtatttatttt 2469419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 41055206 - 41055147
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  41055206 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 41055147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 55682407 - 55682466
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  55682407 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 55682466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 374679 - 374617
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtattt 348  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||| ||||||||||||    
T  374679 cttttatttcaaattaagaatacttcatgaa-ttttgagtaatgtttaaggaattttagtattt 374617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 489
Target Start/End: Original strand, 7199630 - 7199831
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggta-tctagtattaaattta 383  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||| ||||||| |  ||||| || ||||| ||| | || |||||||| ||    
T  7199630 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggta-tttagtaat--ttttttaacagtatagtattttaatattaaatata 7199725  T
Q  384 tcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgaca 483  Q
    | |||| || |   |||||||||||||| |||||||||||    ||||| | | | ||||| ||  | ||||||||||| |||  |||||||| ||||||    
T  7199726 ttagtgtccgcgtcaccaaaatagcgcccgctacgcgcccgcaccccgcgccgcgtcaattttttgggtggccgcgccgcgccgcatttccgctttgaca 7199825  T
Q  484 acagag 489  Q
    ||||||    
T  7199826 acagag 7199831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 48236499 - 48236543
Alignment:
Q  303 aatacttcatgaaattttgagtaatgcttaaggtattttagtattt 348  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  48236499 aatacttcatgaa-ttttgagtaatgtttaaggtattttagtattt 48236543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 37517187 - 37517128
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||| | ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  37517187 cttttattttaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 37517128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 37521403 - 37521344
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||| | ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  37521403 cttttattttaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 37521344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 489
Target Start/End: Original strand, 48197281 - 48197363
Alignment:
Q  402 aaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacagag 489  Q
    ||||||||||  |||||| |||||||||||||| | | ||||| ||| |||||||||||||      |||||||||||||||||||||    
T  48197281 aaatagcgccctctacgccccccgctcccgcaccgcgtcaatttttgggttggccgcgccg-----catttccgcattgacaacagag 48197363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 49812045 - 49812107
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtattt 348  Q
    ||||||||||| ||||  | ||||||||||| |||||||||||| ||||| |||||||||||||    
T  49812045 cttttatttcaaattaggagtacttcatgaa-ttttgagtaatgtttaagttattttagtattt 49812107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 28624060 - 28624011
Alignment:
Q  81 cctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaa 130  Q
    ||||||||||||||||| |||||||   ||||||||||| ||||||||||    
T  28624060 cctctgttgtcaatagcagccgcgccacccgctatagcgaagcggaaaaa 28624011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 13763217 - 13763284
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttcttttt 354  Q
    |||||||||| ||||| ||||| | ||||| |||||||||||  ||||| | |||||||||||||||||    
T  13763217 ttttatttcaaattatgaatacattatgaa-ttttgagtaatatttaagttgttttagtatttcttttt 13763284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 4e-95; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 82 - 411
Target Start/End: Original strand, 23003837 - 23004146
Alignment:
Q  82 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcac 181  Q
    |||||||||||| |||| |||||| | ||||||||||| |||||||||||||||||| |||||||||||| |||||||| || ||||                 
T  23003837 ctctgttgtcaaaagcgtccgcgccggccgctatagcgtagcggaaaaatcaggaccaccgcaccaggccgcgtcggcgtgtgtcag------------- 23003923  T
Q  182 gtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaa 281  Q
           |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  23003924 -------aagtggaaagcggccaaagcggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgattttgcta 23004016  T
Q  282 tcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatt 381  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23004017 tcccttttatttcatattacgaatacttcatgaaattttgactaatgtttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatt 23004116  T
Q  382 tatcagtggccacactaccaaaatagcgcc 411  Q
    ||||||||||| ||| ||  ||||||||||    
T  23004117 tatcagtggccgcaccactgaaatagcgcc 23004146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 194 - 377
Target Start/End: Original strand, 18952494 - 18952678
Alignment:
Q  194 gaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttattt 293  Q
    |||| ||| ||||||| |||||| |||||||||| ||||||||||||||||||| ||||| |||||| ||| |||||||||||||| |||  ||||||||    
T  18952494 gaaagcggtcaaagcggacctatcaatagtaaaagaataacttgtactagttgtgtataactggtattagcaattttcgattttgctatcttttttattt 18952593  T
Q  294 catattataaatacttcatgaaattttgagtaatgcttaaggta-ttttagtatttctttttgaatagtatggtatctagtatta 377  Q
    |||||||| |||  || ||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||  |||||||    
T  18952594 catattatgaatgttttatgaaatttggagtaatgttttaggtatttttagtatttctttttgaatagtatggtattaagtatta 18952678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 20189870 - 20189724
Alignment:
Q  313 gaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaaatagcgcct 412  Q
    |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||| ||| |||||||||||    
T  20189870 gaaattttaagcaatgtttaaggtattttagtatttctttttgaatagtatggtatctaggattaaatttattagtgtccgcaccaccgaaatagcgcct 20189771  T
Q  413 gctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccg 462  Q
    |||||||||||||||||||||| | ||||   ||||||||||||||||||    
T  20189770 gctacgcgccccgctcccgcaccgcgcca---attgagttggccgcgccg 20189724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 230 - 382
Target Start/End: Original strand, 1089840 - 1089991
Alignment:
Q  230 ataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgc 329  Q
    |||||||||||||||||||||||||||||||  || |||||   |||||| |||| || |||||||| |||| ||||||||| |||||||||||||| |     
T  1089840 ataacttgtactagttgtatataattggtatttgcgattttttcttttgctatcc-ttctatttcatgttatgaatacttcaagaaattttgagtaaagt 1089938  T
Q  330 ttaaggtattttagtatttctttttgaatagtatggtatctagtattaaattt 382  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  1089939 ttaaggtattttagtatttctttttgaatagtatgatatttagtattaaattt 1089991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 181 - 486
Target Start/End: Complemental strand, 18964994 - 18964684
Alignment:
Q  181 cgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttg----tatataattggtatcagccattttcgattt 276  Q
    ||||||| |||  |||| ||| ||||||| |||||| |||||||||||||||||||||||||||||    | ||||| |||||| ||| |||||| ||||    
T  18964994 cgtgccagaaggggaaagcggtcaaagcggacctattaatagtaaaacaataacttgtactagttgtgtatttataactggtattagcgattttctattt 18964895  T
Q  277 tgc-aatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggta-ttttagtatttctttttgaatagtatggtatctagta 374  Q
    ||| ||    |||||||||||||||| | || || ||||||||| |||||||| | |||||| ||||||||||||||||||||||||||| |||  ||||    
T  18964894 tgctaactttttttatttcatattatgattattttatgaaatttggagtaatgttgaaggtatttttagtatttctttttgaatagtatgatattaagta 18964795  T
Q  375 ttaaatttatcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttcc 474  Q
    || ||||||| || ||||  || ||| ||||| | |||| |||  ||||  ||||||||| ||||||||| ||  |||||| |||||| |||| ||||||    
T  18964794 tt-aatttattagcggccgtaccaccgaaataacacctgatacatgccctcctcccgcaccgtgccaatttttaggttggctgcgccgcgccacatttcc 18964696  T
Q  475 gcattgacaaca 486  Q
    |||| |||||||    
T  18964695 gcatcgacaaca 18964684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 432
Target Start/End: Original strand, 12524887 - 12525021
Alignment:
Q  297 attataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggt-atctagtattaaatttatcagtggccaca 395  Q
    ||||| ||||||||||||| |||| ||||||| | ||||||||||||||||| |||||||| | ||||||  | ||||||||||| ||  |||| ||||     
T  12524887 attatgaatacttcatgaa-ttttaagtaatgttcaaggtattttagtatttgtttttgaacaatatggtcttttagtattaaatatagtagtgtccacg 12524985  T
Q  396 ctaccaaaatagcgcctgctacgcgccccgctcccgc 432  Q
    | | |||||||||||| |||||| | || ||||||||    
T  12524986 cca-caaaatagcgcccgctacgtgacctgctcccgc 12525021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 38567737 - 38567796
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  38567737 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 38567796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 12524657 - 12524705
Alignment:
Q  82 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaa 130  Q
    |||||||||||||||| |||||||   ||||||||||||||||||||||    
T  12524657 ctctgttgtcaatagctgccgcgccacccgctatagcggagcggaaaaa 12524705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 26278702 - 26278643
Alignment:
Q  306 acttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggt 366  Q
    |||||||||| |||| ||||||| |||||||| ||||||||||||||||||| | ||||||    
T  26278702 acttcatgaa-ttttaagtaatgtttaaggtagtttagtatttctttttgaacaatatggt 26278643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 81 - 383
Target Start/End: Original strand, 1186 - 1487
Alignment:
Q  81 cctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagca 180  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||   ||| ||     
T  1186 cctcagttgtcaatagcggccgcgccggccgctatagcggagcggaaaaatcaagaccaccgcaccaggccgcgtcggcgcgtgtcaggccacgtcggct 1285  T
Q  181 cgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgca 280  Q
    |||| || |||| |||| |||||||   | ||||||||||||||||  |||||||||||||  ||||||||||||||||| ||||||||||||||||||     
T  1286 cgtgtcagaagtggaaagcggccaagatggacctataaatagtaaattaataacttgtactcattgtatataattggtattagccattttcgattttgct 1385  T
Q  281 atcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaat 380  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||  ||||| |||||||||||||| ||||||||||    
T  1386 atcccttttatttcatattatgaatacttcatgaaattttgagtaat-attaaggtattttagtattatttttttaatagtatggtatcaagtattaaat 1484  T
Q  381 tta 383  Q
    |||    
T  1485 tta 1487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 5e-76; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 204 - 432
Target Start/End: Original strand, 46841834 - 46842062
Alignment:
Q  204 aaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataa 303  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||| |||| ||||||||| |||||| |||||||||||||  |    
T  46841834 aaagcggacctatcaatagtaaaacaataacttgtactagttgtatatagttgatattagctatttccgattttgctatccctattatttcatattacga 46841933  T
Q  304 atacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaa 403  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||| ||    
T  46841934 atacttcatgaaattttgagtaatgtttaaggtattttagtatttcttttttaatagtatggtatttagtattaaatttattagtggccacaccaccgaa 46842033  T
Q  404 atagcgcctgctacgcgccccgctcccgc 432  Q
    |||||||| |||||||  ||| |||||||    
T  46842034 atagcgcccgctacgcaacccactcccgc 46842062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 116 - 384
Target Start/End: Original strand, 31379866 - 31380136
Alignment:
Q  116 agcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcacgtgccaaaagttgaaaacggccaaagcgaaccta 215  Q
    |||| ||||||||||| |||||| || ||||||||| |||||| | || || ||| | ||  || | || || |||| |||| |||||||||||   |||    
T  31379866 agcgtagcggaaaaat-aggaccaccacaccaggccgcgtcggtgtgtgtctggccgcgttggcgcatgtcagaagtggaaagcggccaaagcgggacta 31379964  T
Q  216 taaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttc--atattataaatacttcatg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||  ||||||| |||||||||||    
T  31379965 taaatagtaaaacaataacttgtactagttgtatataattggtattagccatttttgattttgctatcccttttatttcatatattatgaatacttcatg 31380064  T
Q  314 aaattttgagtaatgcttaaggtattttagta-tttctttttgaatagtatggtatctagtattaaatttat 384  Q
    ||||||||||||||| | || ||||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  31380065 aaattttgagtaatgttaaatgtattttagtattttattattgaatagtatggtatctagtattaaatttat 31380136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 44274382 - 44274236
Alignment:
Q  313 gaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaaatagcgcct 412  Q
    |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||| ||| |||||||||||    
T  44274382 gaaattttaagcaatgtttaaggtattttagtatttctttttgaatagtatggtatctaggattaaatttattagtgtccgcaccaccgaaatagcgcct 44274283  T
Q  413 gctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccg 462  Q
    |||||||||||||||||||||| | ||||   ||||||||||||||||||    
T  44274282 gctacgcgccccgctcccgcaccgcgcca---attgagttggccgcgccg 44274236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 42772865 - 42772777
Alignment:
Q  80 gcctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 168  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||  ||||| |||| || |||||||||| ||||    
T  42772865 gcctctgttgtcaaaagcggccacgctggccgctatagcggagcggaaaaattaggacaaccgcaacaggtcatgtcggcgcgtgtcag 42772777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 297 - 394
Target Start/End: Original strand, 13096287 - 13096384
Alignment:
Q  297 attataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggta-tctagtattaaatttatcagtggccac 394  Q
    ||||| ||||||||||||| |||| |||| || |||||||||||||||||||||||||||| | ||||||| | ||||||||||| ||| |||| ||||    
T  13096287 attatgaatacttcatgaa-ttttaagtattgtttaaggtattttagtatttctttttgaacaatatggtattttagtattaaatatattagtgtccac 13096384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 36828244 - 36828168
Alignment:
Q  290 atttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtat 368  Q
    |||||| ||||| |||||||||| ||||||||||||||  ||||||||||||||||| | |||||| ||||||||||||    
T  36828244 atttcaaattatgaatacttcat-aaattttgagtaatatttaaggtattttagtatat-tttttgtatagtatggtat 36828168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 11591844 - 11591903
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  11591844 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 11591903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 34500118 - 34500035
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgctt-aaggtattttagtat-ttctttttgaatagtatggtat 368  Q
    |||||||||| ||||| |||||||||| ||||||||||||||  || ||||||||||||||| || |||||| ||||||||||||    
T  34500118 ttttatttcaaattatgaatacttcat-aaattttgagtaataatttaaggtattttagtatattttttttgtatagtatggtat 34500035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 43614160 - 43614219
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  43614160 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 43614219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 46066925 - 46066866
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  46066925 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 46066866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 33516171 - 33516112
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| |||||||| ||| ||||||||||||||||    
T  33516171 cttttatttcaaattaggaatacttcatgaa-ttttgagtgatgtttaaggtattttagta 33516112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 37068425 - 37068484
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtat 346  Q
    |||||||||| ||||| ||||||||||||  |||||| ||||| |||||||||||||||||    
T  37068425 ttttatttcaaattatgaatacttcatgat-ttttgattaatgtttaaggtattttagtat 37068484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 48827204 - 48827271
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttt 353  Q
    ||||||||||| ||||  ||||||| ||||| |||||||||||| ||||||||||||||| ||| ||||    
T  48827204 cttttatttcaaattaggaatacttaatgaa-ttttgagtaatgtttaaggtattttagtttttttttt 48827271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 32788657 - 32788577
Alignment:
Q  86 gttgtcaatagcggccgcgctgaccgctata-----gcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgc 161  Q
    |||||||| ||||||||| | | ||||||||     ||||||||||||||||| |||| ||||||| |||| |||||||||    
T  32788657 gttgtcaaaagcggccgcaccggccgctatagcggtgcggagcggaaaaatcacgaccaccgcacctggccgcgtcggcgc 32788577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 297 - 491
Target Start/End: Original strand, 3967793 - 3967986
Alignment:
Q  297 attataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggt-atctagtattaaatttatcagtggccaca 395  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||||  | ||||||||||| ||| |||| || |     
T  3967793 attatgaatacttcatgaa-ttttaagtaatgcttaaggtattttagtatttctttttgaacaatatggtcttttagtattaaatatattagtgtccgcg 3967891  T
Q  396 ctaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacagaggt 491  Q
    | | |||||||||||| |||||||| ||| ||||| | | |  |||||| ||| | |||||||||||||||  |||||||| ||||||||||||||    
T  3967892 cca-caaaatagcgcccgctacgcgacccactccctcgccgcaccaatttttggggtggccgcgccgtgccgcatttccgctttgacaacagaggt 3967986  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 306 - 489
Target Start/End: Complemental strand, 41012840 - 41012658
Alignment:
Q  306 acttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtatct-agtattaaatttatcagtggccacactaccaaaa 404  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||||||||| | |||||||| | |||||||||| | | || | || | | || ||||    
T  41012840 acttcatgaa-ttttaagtaatgtttaaggtattttagtatttctttttgaacaatatggtattttagtattaaatattttagggtccgcgccac-aaaa 41012743  T
Q  405 tagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgacaacagag 489  Q
    ||||||| ||||||| |||||||||||||| |  ||||||  |||| ||||||||||| |||  |||||||| ||||||||||||    
T  41012742 tagcgcccgctacgcaccccgctcccgcaccgcaccaatttgtgaggtggccgcgccgcgccgcatttccgctttgacaacagag 41012658  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 287 - 368
Target Start/End: Original strand, 8114512 - 8114592
Alignment:
Q  287 tttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtat 368  Q
    ||||||| | ||||| |||||||||| ||||||||||||||| ||||||||||||||||| | |||||| ||||||||||||    
T  8114512 tttattttaaattatgaatacttcat-aaattttgagtaatgtttaaggtattttagtatatttttttgtatagtatggtat 8114592  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 285 - 489
Target Start/End: Original strand, 52539691 - 52539894
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggta-tctagtattaaattta 383  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||| |||||||||||| ||||| || ||||| ||| | || |||||||| ||    
T  52539691 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggaattttagtattt-ttttttaacagtatagtattttaatattaaatata 52539788  T
Q  384 tcagtggccacactaccaaaatagcgcctgctacgcgccccgctcccgcactgtgccaattattgagttggccgcgccgtgccatatttccgcattgaca 483  Q
    | |||| || ||  ||| |||||||||| ||||| | |||    ||||| | | | ||||| ||| | ||||||||||| ||| ||||||||| ||||||    
T  52539789 ttagtgtccgcatcaccgaaatagcgcccgctacacacccgcaccccgcgccgcgtcaatttttggggtggccgcgccgcgccgtatttccgctttgaca 52539888  T
Q  484 acagag 489  Q
    ||||||    
T  52539889 acagag 52539894  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 411
Target Start/End: Original strand, 34570758 - 34570833
Alignment:
Q  336 tattttagtatttctttttgaatagtatggtatctagtattaaatttatcagtggccacactaccaaaatagcgcc 411  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||| ||| ||  ||||||||||    
T  34570758 tattttagtatttctttttgaatagtatagtatttagaattaaatttattagtggccgcaccactgaaatagcgcc 34570833  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 41013059 - 41013010
Alignment:
Q  81 cctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaa 130  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  41013059 cctctgttgtcaatagcggccgcgccgcccgctatagcagagcggaaaaa 41013010  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 3170453 - 3170373
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttctttttgaatagtatggtat 368  Q
    |||||||||| ||||| |||||||||| ||||||||||||||  ||||| ||||||||||| | |||||| ||| ||||||||    
T  3170453 ttttatttcaaattatgaatacttcat-aaattttgagtaatatttaagatattttagtatat-tttttgtataatatggtat 3170373  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 20993713 - 20993654
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| || |  ||||||||||||| |||||||||||| ||||||||||||||||    
T  20993713 cttttatttcaaataaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagta 20993654  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 42872028 - 42871965
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgctt-aaggtattttagtattt 348  Q
    ||||||||||| ||||  ||||||||||| |||||||||||||| || |||||||||||||||||    
T  42872028 cttttatttcaaattaggaatacttcatg-aattttgagtaatgtttaaaggtattttagtattt 42871965  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 52004565 - 52004506
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagta 345  Q
    ||||||||||| ||||  ||||||||||||| | |||||||||| ||||||||||||||||    
T  52004565 cttttatttcaaattaggaatacttcatgaa-tcttgagtaatgtttaaggtattttagta 52004506  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 34570713 - 34570751
Alignment:
Q  206 agcgaacctataaatagtaaaacaataacttgtactagt 244  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  34570713 agcggacctatgaatagtaaaacaataacttgtactagt 34570751  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 28198360 - 28198428
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttcttttt 354  Q
    ||||||||||| ||||| ||||| |||| ||||||||||||    |||||||||||| ||||||||||||    
T  28198360 cttttatttcaaattatgaatacgtcat-aaattttgagtatcatttaaggtattttcgtatttcttttt 28198428  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 126120 - 126187
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagtatttcttttt 354  Q
    |||||||||| ||||| ||||| | ||||| |||||||||||  ||||| | |||||||||||||||||    
T  126120 ttttatttcaaattatgaatacattatgaa-ttttgagtaatatttaagttgttttagtatttcttttt 126187  T

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Target: scaffold0534 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 10861 - 10949
Alignment:
Q  80 gcctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 168  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||  || || ||||||| |||||||||| ||||    
T  10861 gcctctgttgtcaaaagcggccacgctggccgctatagcggagcggaaaaattaggacaaccacaacaggccatgtcggcgcgtgtcag 10949  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 286 - 368
Target Start/End: Original strand, 83725 - 83806
Alignment:
Q  286 ttttatttcatattataaatacttcatgaaattttgagtaa-tgcttaaggtattttagtatttctttttgaatagtatggtat 368  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |  ||||||||||||||||| | |||||| ||||||||||||    
T  83725 ttttatttcaaattatgaatacttcat-aaattttgagtaaatatttaaggtattttagtatat-tttttgtatagtatggtat 83806  T

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Target: scaffold0368 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 8560 - 8623
Alignment:
Q  285 cttttatttcatattataaatacttcatgaaattttgagtaatgctt-aaggtattttagtattt 348  Q
    ||||||||||| ||||  ||||||||||| |||||||||||||| || |||||||||||||||||    
T  8560 cttttatttcaaattaggaatacttcatg-aattttgagtaatgtttaaaggtattttagtattt 8623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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