View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11828_low_5 (Length: 560)
Name: NF11828_low_5
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 541
Target Start/End: Complemental strand, 53268001 - 53267471
Alignment:
| Q |
11 |
caaaggatcagatagtatagcaacaaatgtgtttagaaaaatcttcgattaaattagaactgaaataacaaactcaacgattggatcaaataaatatgtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53268001 |
caaaggatcagatagtatagcaacaaatgtgtttagaaaaatcttcgattaaattagaactgaaataacaaactcaacgattggatcaaataaatatgtt |
53267902 |
T |
|
| Q |
111 |
tacgtgtctagtgagcatcatatcaaatttataatatgttcaatggaag----taggtaatgactatttatggcacctacatgaaagatcatgatatttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53267901 |
tacgtgtctagtgagcatcatatcaaatttataatgtgttcaatggaaggaagtaggtaatgactatttatggcacctacatgaaagatcatgatatttt |
53267802 |
T |
|
| Q |
207 |
gttgcttatcaataatatttaaatctacctgtaagcctgtaacaataaccatattaatattattgggtagacgtttattcatgaaaattagtttttcatt |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53267801 |
gttgcttatcaata---tttaaatctacctgtaagcctgtaacaataaccatattaatattattgggtagacgtttattcatgaaaattagtttttcgtt |
53267705 |
T |
|
| Q |
307 |
gttgataatgacagcatatatacaatttaattttatgaagacaagtcacatgtacctttgtcacgcttgtttgaaaaacacctacttttaataaattttt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53267704 |
gttgataatgacagcatatatacaatttaattttatgaagacaagtcacatgtacctttgt-acgcttgtttgaaaaacacctacttttaataaattttt |
53267606 |
T |
|
| Q |
407 |
acttcgaatgaacttaagaactgatttaacattacaaaattgtgcatgtgaagtttttaaaatggaggaggtacggttgaactaaaacgtggatgccatt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53267605 |
acttcgaatgaacttaagaactgatttaacattacaaaattgtgcatgtgaagtttttaaaatggaggaggtacggttgaactaaaacgtggatgccatt |
53267506 |
T |
|
| Q |
507 |
aagagcgagtacaaaggacaatatctcagccttag |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
53267505 |
aagagcgagtacaaaggacaatatctcagccttag |
53267471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University