View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_low_6 (Length: 482)
Name: NF11828_low_6
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 25 - 464
Target Start/End: Complemental strand, 47806239 - 47805800
Alignment:
| Q |
25 |
gttttcaagttcagcaagagcataaaacaagtcataaatcaattatggatttaacagtatctctaagaaaaaatttggtaaatattctacaatccaagta |
124 |
Q |
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| T |
47806239 |
gttttcaagttcagcaagagcataaaacaagtcataaaacaattatggatttaacattatctctaagaaaaaatttggtaaatattctacaatccaagta |
47806140 |
T |
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| Q |
125 |
aatacactaagccctaaatcccatccaagtcatggtccaaattttgttctacaatctataccatcttcaattaaataatacacttacctcatccgaatca |
224 |
Q |
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| T |
47806139 |
aatacactaaaccctaaatcccatccaagtcatggtccaaattttgttctacaatctataccatcttcaattaaataatacacttacctcatccgagtca |
47806040 |
T |
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| Q |
225 |
tggtcctggctatctgtttccccactttcttcatcagaatcattatgcattacctccataagctcgggggaaactgatggtacacgccttaacaactgtt |
324 |
Q |
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| T |
47806039 |
tggtcctggctatctgtttccccactttcttcatcagaatcattatgcattacctccataagctcgggggaaactgatggtacacgccttaacaactgtt |
47805940 |
T |
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| Q |
325 |
ttagtttctgtggttgctcaagctcttccctttcatttagtaatgcaatttttgtacaacacaaacagtcaaggaggcactataatatactagtccagac |
424 |
Q |
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| T |
47805939 |
ttagtttctgtggttgctcaagctcttccctttcatttagtaatgcaatttttgtacaacacaaacagtcaaggaggcactacaatatactagttcagac |
47805840 |
T |
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| Q |
425 |
ttaagaagaagaaaaatgtgtatttaatctaaacgtgaac |
464 |
Q |
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| T |
47805839 |
ttaagaagaagaaaaatgtgtatttaatctaaacgtgaac |
47805800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 413
Target Start/End: Complemental strand, 47808497 - 47808336
Alignment:
| Q |
252 |
tcttcatcagaatcattatgcattacctccataagctcgggggaaactgatggtacacgccttaacaactgttttagtttctgtggttgctcaagctctt |
351 |
Q |
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| T |
47808497 |
tcttcatcagaatgatcatattttacctccacatgctcgggagaaaccgatggaacacgccttaacagttgttcttgtttctctggtcgttcaagctctt |
47808398 |
T |
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| Q |
352 |
ccctttcatttagtaatgcaatttttgtacaacacaaacagtcaaggaggcactataatata |
413 |
Q |
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| T |
47808397 |
ccctttcatctagtaatgcaatttttgtactgcacaaatggtcaaggaggcactatagtata |
47808336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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