View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11828_low_8 (Length: 467)
Name: NF11828_low_8
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_8 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 46315237 - 46314786
Alignment:
| Q |
16 |
aagaagcaaaacattaacaacaaatcgtacacacattatcaaagagtttctttacaccgacctcgtcaccgccacagatagtttctctgcagaaagctac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
46315237 |
aagaagcaaaacattaacaacaaatcgtacacacattatcaaagagtttctttacaccgacctcgtcaccgccacggatagtttctctgccgaaagctac |
46315138 |
T |
|
| Q |
116 |
ctcggcaaaggtagccacggcagagtttacaaagcaaagttaaacggcgacaacaataacatagttgtcgccgttaaaactacaaagctaactacaaaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46315137 |
ctcggcaaaggtagccacggcagagtttacaaagcaaagttaaacggcgacaaggataacatagttgtcgccgttaaaactacaaagctaactacaaaaa |
46315038 |
T |
|
| Q |
216 |
gcaaacatagtcacatcaatggcaacaacaaaaattgcactggttgtggtaattgtacaagtccagcagaaaacgagatcgagattctttcacaagttcc |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46315037 |
gcaaacatagtcacatcaacggcaacaacaaaaattgcactggttgtggtaattgtacaagtccagcagaaaacgagatcgagattctttcacaagttcc |
46314938 |
T |
|
| Q |
316 |
aaatcctcgtctcgtaaatctcataggatactgcaccgacccaaacggcaataaattaattgtcgttgaatacatgccaaacggttcactgcatgattta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46314937 |
aaatcctcgtctcgtaaatctcataggatactgcaccgacccaaacggcaataaattaattgtcgttgaatacatgccaaacggttcacttcatgattta |
46314838 |
T |
|
| Q |
416 |
ttacactcttcatctaaaccacccggttgtaccagacgtttccggttcgcat |
467 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46314837 |
ttacactcttcatctaaaccacccggttggaccagacgtttccggttcgcat |
46314786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University