View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_low_9 (Length: 450)
Name: NF11828_low_9
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 38370328 - 38370750
Alignment:
| Q |
18 |
ccttccagaaataaactgtttcccacaagttttacattcacacagttctttaccatctgcttcaattttaacaaagtagttccaaacattaaacctttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370328 |
ccttccagaaataaactgtttcccacaagttttacattcacacagttctttaccatctgcttcaattttaacaaagtagttccaaacattaaacctttta |
38370427 |
T |
|
| Q |
118 |
agcttcttatttggtggttcatggtcaccctcagaatatgctgagttacagctctcaccaataaaatccatactacatnnnnnnnnnnnnnnnnnnnntc |
217 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38370428 |
agcttcttatttggtggttcatgatcaccatcagaatatgctgagttacagctctcaccaataaaatccatactacataaaaaagaagaaaaaaaaaatc |
38370527 |
T |
|
| Q |
218 |
aaacaaacaaacacactcaaactctaccacattcgaaactcattagcgtgtatagcaatatacaaaaacgacaaccctgaggattaattttacttgcaat |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38370528 |
aaacaaataaacacactcaaactctaccacattcgaaactcattagcgtgtatagcaatatacaaaaacgacaaccctgaggattaattttacttgctat |
38370627 |
T |
|
| Q |
318 |
caaagagataacagactcttgaagtggagttaatgaaaatgccaaaagaattgttttcattattttcaaaattgcat-atcgcttagctaacatttcatt |
416 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38370628 |
caaagagataacagactcttgaagtggaattaatgaaaatgccaaaagaattgttttcattattttcaaaattgcatcatcgcttagctaacatttcatt |
38370727 |
T |
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| Q |
417 |
ttctctacatcacaacggttcat |
439 |
Q |
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| T |
38370728 |
ttctctacattacaacggttcat |
38370750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 38375049 - 38375179
Alignment:
| Q |
40 |
ccacaagttttacattcacacagttctttaccatctgcttcaattttaacaaagtagttccaaacattaaaccttttaagcttcttatttggtggttcat |
139 |
Q |
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|||||||| |||| ||||||| |||||| |||| | | |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38375049 |
ccacaagtcatacactcacacatttcttttccatttttattaattttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcag |
38375148 |
T |
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| Q |
140 |
ggtcaccct---cagaatatgctgagttaca |
167 |
Q |
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| T |
38375149 |
aatcaccgtcaccagaatatgctgagttaca |
38375179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 38380238 - 38380337
Alignment:
| Q |
38 |
tcccacaagttttacattcacacagttctttaccatctgcttcaattttaacaaagtagttccaaacattaaaccttttaagcttcttatttggtggttc |
137 |
Q |
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|||||||||| |||||||||||| |||||| |||||| | || ||| ||||||||||||||||||||||||||||||||| | || ||||| ||||| |
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| T |
38380238 |
tcccacaagtcatacattcacacatttcttttccatctttatgaactttgacaaagtagttccaaacattaaaccttttaagccttttctttggaggttc |
38380337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 438
Target Start/End: Original strand, 12573996 - 12574073
Alignment:
| Q |
361 |
aaaagaattgttttcattattttcaaaattgcat-atcgcttagctaacatttcattttctctacatcacaacggttca |
438 |
Q |
| |
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|||||||||||||||||||||| || || ||||| ||| | |||||| |||||||| |||||| |||||||| |||||| |
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| T |
12573996 |
aaaagaattgttttcattatttccataaatgcatcatc-catagctagcatttcatcttctctccatcacaatggttca |
12574073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 38217089 - 38217051
Alignment:
| Q |
356 |
atgccaaaagaattgttttcattattttcaaaattgcat |
394 |
Q |
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| T |
38217089 |
atgccaaaagaattgttttcattatttccaaaaatgcat |
38217051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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