View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11829_high_1 (Length: 670)
Name: NF11829_high_1
Description: NF11829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11829_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 16 - 655
Target Start/End: Complemental strand, 34860569 - 34859930
Alignment:
| Q |
16 |
tcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactctgtgagttagttctgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860569 |
tcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactctgtgagttagttctgt |
34860470 |
T |
|
| Q |
116 |
tgttaatttgaatattgtggcatgtaagagtcgcctattctaaagatattagctggcttgccttgacatgatggataatttctctattttaacagtcttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860469 |
tgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacatgatggataatttctctattttaacagtcttc |
34860370 |
T |
|
| Q |
216 |
cctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaaggaccaattttgtttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860369 |
cctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaaggaccaattttgtttt |
34860270 |
T |
|
| Q |
316 |
ttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattggatttagactatgctt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860269 |
ttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattggatttagactatgctt |
34860170 |
T |
|
| Q |
416 |
aaaactgatatcatatttcggaagctggaatggactgtgattataggttccttctcatgtgctgatgatagcgctacttttcccgttacttcacttgagg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860169 |
aaaactgatatcatatttcggaagctggaatggactgtgattataggttccttctcatgtgctgatgatagcgctacttttcccgttacttcacttgagg |
34860070 |
T |
|
| Q |
516 |
atgctcgtagaattccataggatctattgtctcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaa |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860069 |
atgctcgtagaattccataggatctattgtcgcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaa |
34859970 |
T |
|
| Q |
616 |
gctagatgtttttgaagatccttattgctcgtcttctgtg |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34859969 |
gctagatgtttttgaagatccttattgctcgtcttctgtg |
34859930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 2242521 - 2242594
Alignment:
| Q |
16 |
tcaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
87 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| | ||||||| | ||||||||||||||| || || |||||| |
|
|
| T |
2242521 |
tcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University