View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11829_high_3 (Length: 443)
Name: NF11829_high_3
Description: NF11829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11829_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 425
Target Start/End: Complemental strand, 32491318 - 32490912
Alignment:
| Q |
10 |
atgagatggataatcatgaaccattctcttgtaatactcttcaagattctcactttcttgcaaatttggcacaaacatatcatcactgataataaaatta |
109 |
Q |
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| T |
32491318 |
atgagatggataatcatgaaccattatcttataatactcttgaagattctcactttcttgcaaatttggcacaaacatatcatcactgataataaaatta |
32491219 |
T |
|
| Q |
110 |
ttatcagacacaacatcaccaccatcaacaccaagtcctgttgcaagatacataggaggagtagatggttgaannnnnnnnnnnnnnnnnnnnacaccca |
209 |
Q |
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| T |
32491218 |
ttatcagacacaacatcaccaccatcaactccaagtcctgtagcaagaaacataggaggagtagatggttgaacatcatcaaca---------acaccca |
32491128 |
T |
|
| Q |
210 |
gattctgaatctcagttgaccaatcattttcattatcttcttcttcttgaatcaaatccattttgcttctttcaaaggtgaagtcactagttacaatgga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32491127 |
gattctgaatctcagttgaccaatcattttcattatcttcttcttcttgaatcaaatccattttgcttctttcaaaggtgaagtcactagttccaatgga |
32491028 |
T |
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| Q |
310 |
ttctaaactcataacagttcttttcaaaacttgttcaggatcgttgttgttgtatatttcaaatgatggagatgagcgtaaggggtattgaaactcatct |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32491027 |
ttctaaactcataacagttcttttcaaaacttgttcaggatcgttgttgttgtatatttcaaatgatggagatgaacgtaaggggtattgaaactcatct |
32490928 |
T |
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| Q |
410 |
tccgttggtgttttgt |
425 |
Q |
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|||||||||||||||| |
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| T |
32490927 |
tccgttggtgttttgt |
32490912 |
T |
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