View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11829_high_4 (Length: 402)

Name: NF11829_high_4
Description: NF11829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11829_high_4
NF11829_high_4
[»] chr2 (7 HSPs)
chr2 (2-387)||(2293723-2294108)
chr2 (12-387)||(2310054-2310429)
chr2 (1-381)||(2303342-2303722)
chr2 (1-381)||(2321043-2321424)
chr2 (1-387)||(2326891-2327277)
chr2 (2-381)||(2330612-2330991)
chr2 (5-381)||(2350918-2351294)
[»] chr8 (3 HSPs)
chr8 (5-277)||(41127028-41127300)
chr8 (31-168)||(26506746-26506883)
chr8 (104-153)||(26494716-26494765)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 387
Target Start/End: Complemental strand, 2294108 - 2293723
Alignment:
Q  2 cctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatga 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||  || ||||||||||||||||||||| |||||||||||| ||||| ||    
T  2294108 cctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacacgaggatccaacgccatctccgccagcaaga 2294009  T
Q  102 acttcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaa 201  Q
    | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2294008 aattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccccggtggatgacgcctcaa 2293909  T
Q  202 cccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctccttcacttcctccttctctccattttcatcaccacccatcacctcccga 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2293908 cccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccacccatcacctcccga 2293809  T
Q  302 atctcctccacaagcctcccctgcacttctgggtacttcaccacattcgccataatccactgcaaactagtggaagtagtgtctgt 387  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2293808 atctcctccacaagcctcccctgcacttctgggtacttcactacattcgccataatccactgcaaactagtggaagtagtgtctgt 2293723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 387
Target Start/End: Complemental strand, 2310429 - 2310054
Alignment:
Q  12 caaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatgaacttcaccgt 111  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||||||||| ||| | ||| ||||||||    
T  2310429 caaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgacgatccaacgccatctccgccagaaagaaattcaccgt 2310330  T
Q  112 cccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaacccttccaaa 211  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  2310329 cccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccccgatggatgacgcctcaacccttccaaa 2310230  T
Q  212 accacacacttcaaataccgaagtttctgcaagtcttcctccttcacttcctccttctctccattttcatcaccacccatcacctcccgaatctcctcca 311  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2310229 accacacacttcaaataccaaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccacccatcacctcccgaatctcctcca 2310130  T
Q  312 caagcctcccctgcacttctgggtacttcaccacattcgccataatccactgcaaactagtggaagtagtgtctgt 387  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2310129 caagcctccccttcacttctgggtacttcaccacattcgccataatccactccaaactagtggaagtagtgtctgt 2310054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 2303722 - 2303342
Alignment:
Q  1 ccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatg 100  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  2303722 ccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctccgccagcatg 2303623  T
Q  101 aacttcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctca 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||    
T  2303622 aaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaacagaaaatgccccggtggatgacgcctca 2303523  T
Q  201 acccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctccttcacttcctccttctctccattttcatcaccacccatcacctcccg 300  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2303522 acccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttcacttcctccttctctccattctcatcaccacccatcacctcccg 2303423  T
Q  301 aatctcctccacaagcctcccctgcacttctgggtacttcaccacattcgccataatccactgcaaactagtggaagtagt 381  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||    
T  2303422 aatctcctccacaagcctcctctgcacttctgggtacttaaccaaattcgccataatccattgcaaagtagtggaagtagt 2303342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 2321424 - 2321043
Alignment:
Q  1 ccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatg 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321424 ccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatcccacgccatctccgacagcatg 2321325  T
Q  101 aacttcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcatgtggcaacggaaatttcccc-ggtggatgacgcctc 199  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||  ||| | |||| |||||||||||||||    
T  2321324 aaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaacacaaaatgcccctggtggatgacgcctc 2321225  T
Q  200 aacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctccttcacttcctccttctctccattttcatcaccacccatcacctccc 299  Q
    | ||||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| | |||||||||| |    
T  2321224 atcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctctttcacttcctccttctctccattgtcatcactaaccatcacctcac 2321125  T
Q  300 gaatctcctccacaagcctcccctgcacttctgggtacttcaccacattcgccataatccactgcaaactagtggaagtagt 381  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  2321124 gaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagt 2321043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 2327277 - 2326891
Alignment:
Q  1 ccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| | || ||||    
T  2327277 ccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatg 2327178  T
Q  101 aacttcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctca 200  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||| ||  |||| ||||| ||||||  ||| | ||| ||||||||||||||||    
T  2327177 aaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacacaaaatgccctggtggatgacgcctca 2327078  T
Q  201 acccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctccttcacttcctccttctctccattttcatcaccacccatcacctcccg 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||    ||||||||||||| | |||||     
T  2327077 acccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctacaacaccatcaccacccatgaactccct 2326978  T
Q  301 aatctcctccacaagcctcccctgcacttctgggtacttcaccacattcgccataatccactgcaaactagtggaagtagtgtctgt 387  Q
    |||||||| |||||||||||  || || || ||||||||||||| ||||||||||||||| ||||||   ||||||||||| |||||    
T  2326977 aatctcctgcacaagcctcctttgaacgtccgggtacttcaccaaattcgccataatccaatgcaaagcggtggaagtagtatctgt 2326891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 381
Target Start/End: Complemental strand, 2330991 - 2330612
Alignment:
Q  2 cctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatga 101  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |  | ||| |    
T  2330991 cctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgagggtccaaccccatctctgcaaccataa 2330892  T
Q  102 acttcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaa 201  Q
    | ||||||||||||| |||||||||||||||||| |||||||||||||||||  |||| || || ||||||   || | ||| |||||||||||||||||    
T  2330891 aattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaaatgccctggtggatgacgcctcaa 2330792  T
Q  202 cccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctccttcacttcctccttctctccattttcatcaccacccatcacctcccga 301  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||   ||||| ||||||||||||||   |    
T  2330791 cccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctccagcatcatcgccacccatcacctctgta 2330692  T
Q  302 atctcctccacaagcctcccctgcacttctgggtacttcaccacattcgccataatccactgcaaactagtggaagtagt 381  Q
    ||||||||||||||| ||||||| || || ||||||||||||| ||||||||||||||| ||||||   |||||||||||    
T  2330691 atctcctccacaagcttcccctgaacgtccgggtacttcaccaaattcgccataatccattgcaaagcggtggaagtagt 2330612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 381
Target Start/End: Complemental strand, 2351294 - 2350918
Alignment:
Q  5 gtaatatcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatgaact 104  Q
    ||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | || ||| || |    
T  2351294 gtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaat 2351195  T
Q  105 tcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaaccc 204  Q
    | |||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||  |   | ||||||||||||||||||||||||    
T  2351194 tgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacattatgccccggtggatgacgcctcaaccc 2351095  T
Q  205 ttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctccttcacttcctccttctctccattttcatcaccacccatcacctcccgaatc 304  Q
    ||||||||||||||| |||| ||||  |||||||||||| |||||||| ||||||||| |||||||||||||| |||||| |||||||||||||| ||||    
T  2351094 ttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccatcacgacccatcacctccctaatc 2350995  T
Q  305 tcctccacaagcctcccctgcacttctgggtacttcaccacattcgccataatccactgcaaactagtggaagtagt 381  Q
    || |||||||||||||| ||||| || ||||||||||||| ||| ||||||||||| ||||||   |||||||||||    
T  2350994 tcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtggaagtagt 2350918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 277
Target Start/End: Complemental strand, 41127300 - 41127028
Alignment:
Q  5 gtaatatcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatgaact 104  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| |||| |||||| |||||||||| ||| |||| | | || || | || |||||| |    
T  41127300 gtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaacactagggtccctccctatgtctgccaccatgaaat 41127201  T
Q  105 tcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaaccc 204  Q
    ||||   | |||||||||||| ||| |||||||  |||||||||||||| ||||||||||| ||||||  ||| | ||||||||| |||| ||||| |||    
T  41127200 tcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacacctcagccc 41127101  T
Q  205 ttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctccttcacttcctccttctctccattt 277  Q
    |||||||| ||||||||| | |||  | || ||||||||||||||||| || | |||||  |||||| |||||    
T  41127100 ttccaaaatcacacactttagatatggtaggttctgcaagtcttcctctttaatttccttattctcttcattt 41127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 26506883 - 26506746
Alignment:
Q  31 aaacctttctggcttaaattccattggatcctcccaaacacgaggatcccacgccatctccgacagcatgaacttcaccgtcccatttttaggcaccaaa 130  Q
    |||||| |||||||| ||| |||| ||||||||||||||||  ||||||||| | | ||| | || ||| || || || ||||||||||||||||||||     
T  26506883 aaacctatctggcttgaatgccatgggatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaag 26506784  T
Q  131 taaccgttcaaaaccacatcctctttcaccgcatgtgg 168  Q
    |||||||| |||| |||||||||  |||| ||||||||    
T  26506783 taaccgttaaaaatcacatcctcggtcactgcatgtgg 26506746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 26494765 - 26494716
Alignment:
Q  104 ttcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctc 153  Q
    ||||| |||||||||||||||||||| ||||| |||||||| | ||||||    
T  26494765 ttcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc 26494716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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