View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11829_high_5 (Length: 300)
Name: NF11829_high_5
Description: NF11829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11829_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 10036182 - 10035912
Alignment:
| Q |
20 |
ctcggcacatcatggacgaatgggatcgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagcttctgttcaggagaaaatgctt |
119 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10036182 |
ctcggcacatcatggacaaatgggattgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagctgctgttcaggagaaaatgctt |
10036083 |
T |
|
| Q |
120 |
gtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctgtgcagaaccgtacct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10036082 |
gtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctgtgcagaaccgtacct |
10035983 |
T |
|
| Q |
220 |
gtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10035982 |
gtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg |
10035912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 10096561 - 10096280
Alignment:
| Q |
20 |
ctcggcacatcatggacgaatgggatcgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagcttctgttcaggagaaaatgctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
10096561 |
ctcggcacatcatggacgaatgggattgcgacaacaacaagaaattggtcatgctgcagctgtcacgcacccactagctgctgttcaggagaaaatgctt |
10096462 |
T |
|
| Q |
120 |
gtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttc-----------gcctgtgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10096461 |
gtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctcattttcgcctgtgca |
10096362 |
T |
|
| Q |
209 |
gaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg |
290 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10096361 |
gaacggtacctgtttcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg |
10096280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University