View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11829_high_6 (Length: 296)

Name: NF11829_high_6
Description: NF11829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11829_high_6
NF11829_high_6
[»] chr7 (3 HSPs)
chr7 (35-296)||(6968983-6969244)
chr7 (35-77)||(6959284-6959326)
chr7 (148-177)||(2754293-2754322)
[»] chr4 (1 HSPs)
chr4 (146-177)||(51238018-51238049)
[»] scaffold0576 (1 HSPs)
scaffold0576 (148-177)||(2214-2243)
[»] chr8 (1 HSPs)
chr8 (148-177)||(3731772-3731801)
[»] chr6 (1 HSPs)
chr6 (148-177)||(15357225-15357254)
[»] chr2 (1 HSPs)
chr2 (148-177)||(28655995-28656024)
[»] chr1 (2 HSPs)
chr1 (148-177)||(20262163-20262192)
chr1 (146-174)||(2445466-2445494)
[»] chr5 (1 HSPs)
chr5 (137-177)||(28735822-28735862)
[»] chr3 (1 HSPs)
chr3 (146-182)||(31652453-31652489)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 35 - 296
Target Start/End: Original strand, 6968983 - 6969244
Alignment:
Q  35 tcataactcatgaggttagacttcgtatctatgcagcaccaacgattgaagacgtgtgtttggtgtcagacacgtgttggtgcatcgacatatgtcacca 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6968983 tcataactcatgaggttagacttcgtatctatgcagcaccaacgattgaagatgtgtgtttggtgtcagacacgtgttggtgcatcgacatatgtcacca 6969082  T
Q  135 atacatgtaagtacattcaatcacttccattttcttaaattataatcgctatcgtgttttataccttcgtatcattgcaattttaataaagtaccacaaa 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969083 atacatgtaagtacattcaatcacttccattttcttaaattataatcgctatcgtgttttataccttcgtatcattgcaattttaataaagtaccacaaa 6969182  T
Q  235 gagaaatgcgagataacataacataatgtttgtaaactaaatcaaacctgcaagttggaatt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969183 gagaaatgcgagataacataacataatgtttgtaaactaaatcaaacctgcaagttggaatt 6969244  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 6959326 - 6959284
Alignment:
Q  35 tcataactcatgaggttagacttcgtatctatgcagcaccaac 77  Q
    ||||||||||||| |||||||||| |||||||| |||||||||    
T  6959326 tcataactcatgaagttagacttcatatctatgtagcaccaac 6959284  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 2754293 - 2754322
Alignment:
Q  148 cattcaatcacttccattttcttaaattat 177  Q
    ||||||||||||||||||||||||||||||    
T  2754293 cattcaatcacttccattttcttaaattat 2754322  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 51238018 - 51238049
Alignment:
Q  146 tacattcaatcacttccattttcttaaattat 177  Q
    ||||||||||||||||||||||||||||||||    
T  51238018 tacattcaatcacttccattttcttaaattat 51238049  T

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Target: scaffold0576 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 2243 - 2214
Alignment:
Q  148 cattcaatcacttccattttcttaaattat 177  Q
    ||||||||||||||||||||||||||||||    
T  2243 cattcaatcacttccattttcttaaattat 2214  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 3731801 - 3731772
Alignment:
Q  148 cattcaatcacttccattttcttaaattat 177  Q
    ||||||||||||||||||||||||||||||    
T  3731801 cattcaatcacttccattttcttaaattat 3731772  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 15357254 - 15357225
Alignment:
Q  148 cattcaatcacttccattttcttaaattat 177  Q
    ||||||||||||||||||||||||||||||    
T  15357254 cattcaatcacttccattttcttaaattat 15357225  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 28656024 - 28655995
Alignment:
Q  148 cattcaatcacttccattttcttaaattat 177  Q
    ||||||||||||||||||||||||||||||    
T  28656024 cattcaatcacttccattttcttaaattat 28655995  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 20262192 - 20262163
Alignment:
Q  148 cattcaatcacttccattttcttaaattat 177  Q
    ||||||||||||||||||||||||||||||    
T  20262192 cattcaatcacttccattttcttaaattat 20262163  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 2445466 - 2445494
Alignment:
Q  146 tacattcaatcacttccattttcttaaat 174  Q
    |||||||||||||||||||||||||||||    
T  2445466 tacattcaatcacttccattttcttaaat 2445494  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 28735822 - 28735862
Alignment:
Q  137 acatgtaagtacattcaatcacttccattttcttaaattat 177  Q
    |||| ||| |||||||||||||||| |||||||||||||||    
T  28735822 acatataattacattcaatcacttctattttcttaaattat 28735862  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 31652489 - 31652453
Alignment:
Q  146 tacattcaatcacttccattttcttaaattataatcg 182  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  31652489 tacattcaatcacttctattttcttaaattattatcg 31652453  T

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