View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11829_low_2 (Length: 537)
Name: NF11829_low_2
Description: NF11829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11829_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 39780939 - 39781138
Alignment:
| Q |
25 |
gtgtgattattcttcggctcaacagacaaccgaataactgaatacataaaatccacaaacgatatgcttaacaagcttaagaatttccnnnnnnnnnngt |
124 |
Q |
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| T |
39780939 |
gtgtgattattcttcggctcaacagacaaccgaataactgaatacataaaatccacaaacgatatgcttaacaagcttaagaatttcctttttttttttt |
39781038 |
T |
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| Q |
125 |
ct--gaactccctaaacctctaatattataaatagctatagctaatagcaaaaaatttatgaatatgttattttatataacttttcaattcaaacccatc |
222 |
Q |
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| T |
39781039 |
ctctgaactccctaaacctctaatattataaatagctatagctaatagcaaaaattttatgaatatgttattttatataacttttcaattcaaacccatc |
39781138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 428 - 527
Target Start/End: Original strand, 39781337 - 39781436
Alignment:
| Q |
428 |
gttccactatattagtcaaccatgtcatcgcactgggttgctctcatgtgacccgatttgaaagactatatggtaattacaaaatctgcacacaggttct |
527 |
Q |
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| T |
39781337 |
gttccactatattagtcaaccatgtcatcgcactgggttgctctcatgtgacccgatttgaaagactatatggtaattacaaaatctgcaaacatgttct |
39781436 |
T |
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