View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11829_low_5 (Length: 300)

Name: NF11829_low_5
Description: NF11829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11829_low_5
NF11829_low_5
[»] chr2 (2 HSPs)
chr2 (20-290)||(10035912-10036182)
chr2 (20-290)||(10096280-10096561)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 10036182 - 10035912
Alignment:
Q  20 ctcggcacatcatggacgaatgggatcgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagcttctgttcaggagaaaatgctt 119  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10036182 ctcggcacatcatggacaaatgggattgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagctgctgttcaggagaaaatgctt 10036083  T
Q  120 gtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctgtgcagaaccgtacct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036082 gtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctgtgcagaaccgtacct 10035983  T
Q  220 gtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035982 gtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg 10035912  T

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Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 10096561 - 10096280
Alignment:
Q  20 ctcggcacatcatggacgaatgggatcgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagcttctgttcaggagaaaatgctt 119  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  10096561 ctcggcacatcatggacgaatgggattgcgacaacaacaagaaattggtcatgctgcagctgtcacgcacccactagctgctgttcaggagaaaatgctt 10096462  T
Q  120 gtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttc-----------gcctgtgca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||    
T  10096461 gtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctcattttcgcctgtgca 10096362  T
Q  209 gaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg 290  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10096361 gaacggtacctgtttcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg 10096280  T

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