View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11829_low_7 (Length: 234)

Name: NF11829_low_7
Description: NF11829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11829_low_7
NF11829_low_7
[»] chr4 (1 HSPs)
chr4 (2-226)||(3882564-3882788)
[»] chr1 (2 HSPs)
chr1 (2-226)||(50452744-50452968)
chr1 (43-165)||(10102799-10102921)
[»] chr6 (2 HSPs)
chr6 (13-164)||(24892927-24893078)
chr6 (14-164)||(24989754-24989904)
[»] chr7 (1 HSPs)
chr7 (13-164)||(23206957-23207108)
[»] chr3 (1 HSPs)
chr3 (13-164)||(23425409-23425560)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 3882788 - 3882564
Alignment:
Q  2 tgagatggacatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctgg 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3882788 tgagctggacatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctgg 3882689  T
Q  102 cctccaagagtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacaaggaggatgttgtgg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||     
T  3882688 cctccaagagtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctattggcggtagcagacgcatggaggatgttgtgt 3882589  T
Q  202 cccactaaatatttagaagagagaa 226  Q
    || ||||||||||||| ||||||||    
T  3882588 cctactaaatatttagcagagagaa 3882564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 50452968 - 50452744
Alignment:
Q  2 tgagatggacatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctgg 101  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50452968 tgagctggacatcatgaatatcaataacagggactaaagaaccaaggggcccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctgg 50452869  T
Q  102 cctccaagagtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacaaggaggatgttgtgg 201  Q
    ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| || ||| |||||| || |||||| ||||||     
T  50452868 cctccaagagtaaccaagtttgaagatatctttggcacggatgatagatgaccaagaaggtgagctattggtggtggcagacgcatggaggacgttgtgc 50452769  T
Q  202 cccactaaatatttagaagagagaa 226  Q
    || ||| ||||||| | ||||||||    
T  50452768 cctactgaatattttgcagagagaa 50452744  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 10102799 - 10102921
Alignment:
Q  43 ccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagtaacctagtttgaatatatctttggcacgga 142  Q
    |||||| |||||||| ||||||||||  | |||||||| |||||  ||||||| ||||  | |||| | |||||   |||||| |||||||||||||| |    
T  10102799 ccaaggaggccatggggacaccaattgttgaaccaaaaggaggattaacccgagcctgcgcgccaataataaccatttttgaaaatatctttggcacgaa 10102898  T
Q  143 tgattgatgaccaagaaggtgag 165  Q
    |||| |||| |||||| ||||||    
T  10102899 tgatagatgcccaagagggtgag 10102921  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 24892927 - 24893078
Alignment:
Q  13 tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt 112  Q
    ||||||||||||||||  |||||  | || |||||| | |||||| |||||||||| ||||||||||| ||||| ||||| || || ||||||||||| |    
T  24892927 tcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaat 24893026  T
Q  113 aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtga 164  Q
    ||||| ||||||  || ||||| ||||| ||||| | || ||| ||||||||    
T  24893027 aaccttgtttgagaatgtcttttgcacgaatgatagctgtccatgaaggtga 24893078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 24989754 - 24989904
Alignment:
Q  14 catgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagta 113  Q
    |||||||||||||||| || |  ||||| |||||| | |||||||| |||||||| || |||||||| ||||| |||||||| ||||||| |||||  ||    
T  24989754 catgaatatcaataaccggaatcaaagacccaaggagtccatggtggcaccaattgctgaaccaaaaggaggatgaacccgagcctggccgccaagcata 24989853  T
Q  114 acctagtttgaatatatctttggcacggatgattgatgaccaagaaggtga 164  Q
    |||   |||||  ||||| || ||||| ||||| | || ||||||||||||    
T  24989854 accatttttgagaatatccttagcacgaatgatagctgcccaagaaggtga 24989904  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 23206957 - 23207108
Alignment:
Q  13 tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt 112  Q
    ||||||||||||||||  ||||| ||||| |||||| | |||||| ||  |||||| || |||||||||||||| ||||| || || ||||||||||| |    
T  23206957 tcatgaatatcaataatggggaccaaagaaccaaggagaccatggggatgccaattgctgaaccaaaaagaggaggaaccggagcccggcctccaagaat 23207056  T
Q  113 aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtga 164  Q
    ||||   |||||| || ||||| ||||| ||||| | || ||| ||||||||    
T  23207057 aaccatttttgaaaatgtcttttgcacgaatgatagctgcccaggaaggtga 23207108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 23425560 - 23425409
Alignment:
Q  13 tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt 112  Q
    ||||||||||||||||  |||||  |||| |||||| | |||||| |||||||||| || |||||||| ||||| ||||| || || ||||||||||| |    
T  23425560 tcatgaatatcaataatggggaccgaagaaccaaggagaccatggggacaccaattgcttaaccaaaacgaggaggaaccggagcccggcctccaagaat 23425461  T
Q  113 aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtga 164  Q
    | ||   |||||| || ||||| ||||| ||||| | || ||| ||||||||    
T  23425460 agccatttttgaaaatgtcttttgcacgaatgatagctgcccatgaaggtga 23425409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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