View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11830_high_3 (Length: 250)
Name: NF11830_high_3
Description: NF11830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11830_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45145469 - 45145693
Alignment:
| Q |
1 |
ctccatctgcaatgcctgatgtatagaccaattgcatgtttgaattatcgctgagtttgacagaataacacattttgataacactttgaaatttcaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45145469 |
ctccatctgcaatgcctgatgtgtagaccaattgcatgtttgaattatcggtgagtttgacagaataactcattttgataacactttgaaatttcaacaa |
45145568 |
T |
|
| Q |
101 |
aatcacgatgctaccgtgattttgtcaaatttcgtgtgattctaaacatacacctaatatttcggagacaaaaggttatgaccggtctaatttcattcta |
200 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
45145569 |
aatcacgatgctaccatgattttgtc-aatttcgtgtgattctaaacatacacctaatatttcgtggacaaaaggttatgaccagtctaatttcattcta |
45145667 |
T |
|
| Q |
201 |
ctatgtagtctttattcaatgtactc |
226 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
45145668 |
ctatgtagtctttatccaatgtactc |
45145693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 42664689 - 42664653
Alignment:
| Q |
93 |
ttcaacaaaatcacgatgctaccgtgattttgtcaaa |
129 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42664689 |
ttcaacaaaatcacggtgctaccgtgattttgtcaaa |
42664653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 28284575 - 28284519
Alignment:
| Q |
93 |
ttcaacaaaatcacgatgctaccgtgattttgtcaaatttcgtgtgattctaaacat |
149 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
28284575 |
ttcaacaaaattacgatctgaccgtgattttgtcaaatttattgtgattccaaacat |
28284519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University