View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11830_low_1 (Length: 368)
Name: NF11830_low_1
Description: NF11830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11830_low_1 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 175719 - 176052
Alignment:
| Q |
15 |
atgaagctcaactttcctctaaatccttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaa-ccatcgatgacagattcg |
113 |
Q |
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| T |
175719 |
atgaagctcaactttcctctaaatccttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaaaccatcgatgacagattcg |
175818 |
T |
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| Q |
114 |
actgtggtgatccgctactatggaacccttgtaccaccaaattcaatatattgccctctttggatttcgagaaaagtctacaaattgcatacaccattgg |
213 |
Q |
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| T |
175819 |
actgtggtgatccgctactatggaacccttgtaccaccaaattcaatatattgccctctttggatttcgagaaaagtctacaaattgcatacaccattgg |
175918 |
T |
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| Q |
214 |
gtatgacgctcaatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaatatttcaaaatgaaatttacaaaactcaagttaag |
313 |
Q |
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| T |
175919 |
gtatgacgctcaatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaa---ttcaaaatgatgtttacaaaactcaagttaag |
176015 |
T |
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| Q |
314 |
gctcacactttaggcaccaactcttggagaaggattc |
350 |
Q |
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| T |
176016 |
gttcacactttaggcaccaactcttggagaaggattc |
176052 |
T |
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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 40724 - 40673
Alignment:
| Q |
298 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggatt |
349 |
Q |
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| T |
40724 |
caaaactcaagttaaagttcatactttgggcaccaactcttggagaaggatt |
40673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 1421520 - 1421467
Alignment:
| Q |
295 |
ttacaaaactcaagttaaggctcacactttaggcaccaactcttggagaaggatt |
349 |
Q |
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| T |
1421520 |
ttacaaaactcaagttgaagttcatacttt-ggcaccaactcttggagaaggatt |
1421467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 55419478 - 55419528
Alignment:
| Q |
298 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggat |
348 |
Q |
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| T |
55419478 |
caaaactcaagttagggctcatactttaggtaccaacttttggaaaaggat |
55419528 |
T |
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