View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11830_low_2 (Length: 331)
Name: NF11830_low_2
Description: NF11830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11830_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 175718 - 175399
Alignment:
| Q |
1 |
atcagggacgatggttgttgagttgttgttgttaaaaacagaagtaagtcgggaatcaaggagagagaagttcccttctgaaaagaaagcccacgggctt |
100 |
Q |
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| T |
175718 |
atcagggacgatggttgttgagttgttgttgttaaaaacagaagtaagtcgggaatcaaggagagagaagtttccttctgaaaagaaagcccacgggctt |
175619 |
T |
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| Q |
101 |
atgaggaggttgtggtggcggtggtggatctttgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacac |
200 |
Q |
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| T |
175618 |
atgaggaggttgtggtggcggcggtggatctttgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacac |
175519 |
T |
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| Q |
201 |
agttgagtgtcaagagtgacttgataggggtcctgtacagaatttctaacaccagatcgagagatagcagagcaaacaggccgagggggtctgacaagtt |
300 |
Q |
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| T |
175518 |
agttgagtgtcaagagtgacttgataggggtcctgtacagaatttctaacagcagatcgagagatagcagagcaaacaggccgagggggtctgacaagtt |
175419 |
T |
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| Q |
301 |
ttgttttcttatattcctat |
320 |
Q |
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| T |
175418 |
ttgttttcttatatttctat |
175399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 307
Target Start/End: Original strand, 1460283 - 1460457
Alignment:
| Q |
133 |
tgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtc |
232 |
Q |
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| T |
1460283 |
tgacaagcgaaggtgatctttggaaaatttaggatcagaaattaaagaattcaagggcttggaaacacacttgagtgtcaagagtgatttcacagggaga |
1460382 |
T |
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| Q |
233 |
ctgtacagaatttctaacaccagatcgagagatagcagagcaaacaggccgagggggtctgacaagttttgtttt |
307 |
Q |
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| T |
1460383 |
ccgtacaaaatttctaacactagatctggtgataacaaagaaaacaggccgagggggtccgacaagttttgtttt |
1460457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 309
Target Start/End: Original strand, 1471673 - 1471846
Alignment:
| Q |
135 |
acaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtcct |
234 |
Q |
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| T |
1471673 |
acaagcgaaggtgacctttggcaaatttgggatcagaaattaagaaattcaagggcttggaaacacacttgagtgtcaagagtgatttcacagggagacc |
1471772 |
T |
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| Q |
235 |
gtacagaatttctaacaccagatcgagagatagcagagcaaacaggccgagggggtctgacaagttttgttttct |
309 |
Q |
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| T |
1471773 |
atacagaatttctagcaccagatcgatcgataacaaagaaaacaggccga-ggggtccgaagagttttgttttct |
1471846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 1442853 - 1443030
Alignment:
| Q |
133 |
tgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtc |
232 |
Q |
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|||||||||||||||||| |||| ||| || ||||||||||||| |||| | || | ||| |||| | ||||||||||| || ||||| | |||| | |
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| T |
1442853 |
tgacaagcgaaggtgatctttggtgaagttaggatcagaaataatggaaatcaagagcttgcagacttacttgagtgtcaatagcgacttcaaagggagc |
1442952 |
T |
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| Q |
233 |
ctgtacagaatttctaacaccagatcgagagatagcagagcaaacaggccgagggggtctgacaagttttgttttctt |
310 |
Q |
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| T |
1442953 |
ctgtaaaagatttctaacaccagatcaagtgataacagagcaaacatgccgagggtgtctgacgagttttgatttctt |
1443030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 371535 - 371628
Alignment:
| Q |
129 |
tctttgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgactt |
222 |
Q |
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| T |
371535 |
tctttgacaagcgaaagtgatctttggcgaatttaggatcggaaataatggaattcaagggcttgcagacacacttgagtgtcaagagtgactt |
371628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 55419058 - 55418944
Alignment:
| Q |
137 |
aagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtcctgt |
236 |
Q |
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| T |
55419058 |
aagcgaatgtgatctttggcaaatatgggatcagaaattaaggcattcaagggcttgcaaacacacttgagtatcatgagtgacttcacaggaagcctat |
55418959 |
T |
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| Q |
237 |
acagaatttctaaca |
251 |
Q |
| |
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|||| |||||||||| |
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| T |
55418958 |
acaggatttctaaca |
55418944 |
T |
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