View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11831_high_12 (Length: 348)

Name: NF11831_high_12
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11831_high_12
NF11831_high_12
[»] chr6 (9 HSPs)
chr6 (6-100)||(9703858-9703952)
chr6 (1-99)||(9819796-9819894)
chr6 (21-93)||(9825502-9825574)
chr6 (198-255)||(9763875-9763932)
chr6 (259-314)||(9763650-9763705)
chr6 (283-317)||(1231215-1231249)
chr6 (36-85)||(176334-176383)
chr6 (286-315)||(30536884-30536913)
chr6 (282-318)||(10452336-10452372)
[»] chr3 (13 HSPs)
chr3 (36-75)||(9608346-9608385)
chr3 (36-81)||(4142136-4142181)
chr3 (36-81)||(4157946-4157991)
chr3 (36-75)||(771501-771540)
chr3 (272-315)||(849826-849869)
chr3 (36-75)||(2442049-2442088)
chr3 (36-75)||(2456259-2456298)
chr3 (36-75)||(3754610-3754649)
chr3 (36-75)||(13498234-13498273)
chr3 (280-315)||(32582859-32582894)
chr3 (285-315)||(31615478-31615508)
chr3 (286-315)||(25447164-25447193)
chr3 (282-314)||(36878689-36878721)
[»] chr2 (11 HSPs)
chr2 (36-79)||(6538840-6538883)
chr2 (36-81)||(7168692-7168737)
chr2 (282-315)||(37419582-37419615)
chr2 (286-317)||(7103392-7103423)
chr2 (36-86)||(7160756-7160806)
chr2 (282-315)||(2416435-2416468)
chr2 (282-315)||(6772448-6772481)
chr2 (286-319)||(36677771-36677804)
chr2 (40-76)||(7174379-7174415)
chr2 (287-315)||(40059381-40059409)
chr2 (287-315)||(40085281-40085309)
[»] scaffold0044 (1 HSPs)
scaffold0044 (36-85)||(89143-89192)
[»] chr8 (3 HSPs)
chr8 (279-312)||(1096615-1096648)
chr8 (286-321)||(10727460-10727495)
chr8 (272-312)||(5290704-5290744)
[»] chr1 (8 HSPs)
chr1 (284-317)||(37617382-37617415)
chr1 (280-314)||(5886905-5886939)
chr1 (287-317)||(24417655-24417685)
chr1 (286-315)||(172492-172521)
chr1 (282-315)||(23445455-23445488)
chr1 (286-315)||(29045852-29045881)
chr1 (286-315)||(30013998-30014027)
chr1 (284-312)||(28467558-28467586)
[»] chr7 (5 HSPs)
chr7 (282-314)||(44917441-44917473)
chr7 (286-317)||(20526566-20526597)
chr7 (286-314)||(28691755-28691783)
chr7 (282-314)||(40371569-40371601)
chr7 (286-314)||(44822081-44822109)
[»] chr4 (13 HSPs)
chr4 (286-318)||(52169939-52169971)
chr4 (285-315)||(3891713-3891743)
chr4 (277-315)||(31851571-31851609)
chr4 (280-314)||(37575849-37575883)
chr4 (282-312)||(44638141-44638171)
chr4 (286-315)||(7367973-7368002)
chr4 (285-314)||(12163006-12163035)
chr4 (286-315)||(22662170-22662199)
chr4 (286-315)||(22666649-22666678)
chr4 (286-315)||(41336882-41336911)
chr4 (286-315)||(52428786-52428815)
chr4 (36-85)||(55419782-55419831)
chr4 (285-317)||(46175591-46175623)
[»] chr5 (7 HSPs)
chr5 (282-317)||(9174936-9174971)
chr5 (280-315)||(40335786-40335821)
chr5 (282-315)||(9107212-9107245)
chr5 (286-315)||(32010067-32010096)
chr5 (289-317)||(583701-583729)
chr5 (282-314)||(34736442-34736474)
chr5 (287-315)||(39105587-39105615)
[»] scaffold0388 (1 HSPs)
scaffold0388 (284-317)||(8746-8779)
[»] scaffold0015 (1 HSPs)
scaffold0015 (36-81)||(32331-32376)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 9703858 - 9703952
Alignment:
Q  6 ttatgagaatccaaatgaggaacagtggcgaatttagtccaagaatctctatttccatattccttcataagtcaaatatcttgtccacgaaggag 100  Q
    |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9703858 ttataagaatccaagtgaggaacagtggcgaatttagtccaaaaatctctatttccatattccttcataagccaaatatcttgtccacgaaggag 9703952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 9819796 - 9819894
Alignment:
Q  1 gatagttatgagaatccaaatgaggaacagtggcgaatttagtccaagaatctctatttccatattccttcataagtcaaatatcttgtccacgaagga 99  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  9819796 gatagttataagaatccaaatgaggaacagtggcaaatttagtccaagagtctctatttccatattccttcataagccaaatatcccgtccacgaagga 9819894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 9825502 - 9825574
Alignment:
Q  21 tgaggaacagtggcgaatttagtccaagaatctctatttccatattccttcataagtcaaatatcttgtccac 93  Q
    ||||||||||| || |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  9825502 tgaggaacagttgcaaatttagtccaagagtttctatttccatattccttcataagccaaatatcttgtccac 9825574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 9763932 - 9763875
Alignment:
Q  198 gaacaggaatatccccttcagcagacatatttcctataatttgacaataattggaggt 255  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9763932 gaacatgaacatccccttcagcagacatatttcctataacttgacaataattggaggt 9763875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 9763705 - 9763650
Alignment:
Q  259 aacaaattacataatagttataaggcatgtttggattgacttatttgagtttatct 314  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||    
T  9763705 aacaaattacataatagttataacgcatgtttgaattggcttatttaagtttatct 9763650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 1231215 - 1231249
Alignment:
Q  283 gcatgtttggattgacttatttgagtttatctatt 317  Q
    ||||||||||||||| |||||||||||||||||||    
T  1231215 gcatgtttggattgatttatttgagtttatctatt 1231249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 176383 - 176334
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtcaaatatc 85  Q
    |||||||||||||||||| |||||||||| || |||||| | ||||||||    
T  176383 aatttagtccaagaatctttatttccataatcattcatacgccaaatatc 176334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 30536884 - 30536913
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  30536884 tgtttggattgacttatttgagtttatcta 30536913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 10452336 - 10452372
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatctattt 318  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  10452336 ggcatgtttggattggcttatttgagcttatctattt 10452372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 9608346 - 9608385
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataa 75  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataa 9608385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 4142136 - 4142181
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtcaaa 81  Q
    |||||||||||||| ||| |||||||||||||||||||||| ||||    
T  4142136 aatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 4157946 - 4157991
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtcaaa 81  Q
    |||||||||||||| ||| |||||||||||||||||||||| ||||    
T  4157946 aatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 771501 - 771540
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataa 75  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  771501 aatttagtccaagagtctgtatttccatattccttcataa 771540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 849869 - 849826
Alignment:
Q  272 atagttataaggcatgtttggattgacttatttgagtttatcta 315  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||    
T  849869 atagttctaaggcctgtttggattgacttatttgaatttatcta 849826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 2442088 - 2442049
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataa 75  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  2442088 aatttagtccaagaatctttatttccatactccttcataa 2442049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 2456298 - 2456259
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataa 75  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  2456298 aatttagtccaagagtctttatttccatattccttcataa 2456259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 3754649 - 3754610
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataa 75  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  3754649 aatttagtccaagactctttatttccatattccttcataa 3754610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 13498273 - 13498234
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataa 75  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataa 13498234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 32582894 - 32582859
Alignment:
Q  280 aaggcatgtttggattgacttatttgagtttatcta 315  Q
    |||| |||||||||||||||||||||||||||||||    
T  32582894 aaggtatgtttggattgacttatttgagtttatcta 32582859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 315
Target Start/End: Original strand, 31615478 - 31615508
Alignment:
Q  285 atgtttggattgacttatttgagtttatcta 315  Q
    |||||||||||||||||||||||||||||||    
T  31615478 atgtttggattgacttatttgagtttatcta 31615508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 25447164 - 25447193
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  25447164 tgtttggattgacttatttgagtttatcta 25447193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 36878689 - 36878721
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatct 314  Q
    |||||||||||||| ||||||||||||||||||    
T  36878689 ggcatgtttggatttacttatttgagtttatct 36878721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 6538883 - 6538840
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtca 79  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  6538883 aatttagtccaagaatctttatttccatactccttcataagtca 6538840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 7168692 - 7168737
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtcaaa 81  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  7168692 aatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 37419582 - 37419615
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||||||    
T  37419582 ggcatgtttggattgacttatttgagtttatcta 37419615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 317
Target Start/End: Original strand, 7103392 - 7103423
Alignment:
Q  286 tgtttggattgacttatttgagtttatctatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  7103392 tgtttggattgacttatttgagtttatctatt 7103423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 7160756 - 7160806
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtcaaatatct 86  Q
    |||||||||||||||||  |||||||||| ||||||||||| |||| ||||    
T  7160756 aatttagtccaagaatcattatttccatactccttcataagccaaacatct 7160806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 2416468 - 2416435
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatcta 315  Q
    ||||||||| ||||||||||||||||||||||||    
T  2416468 ggcatgtttagattgacttatttgagtttatcta 2416435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 6772448 - 6772481
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatcta 315  Q
    |||||||||||||||||||||||||| |||||||    
T  6772448 ggcatgtttggattgacttatttgagcttatcta 6772481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 36677804 - 36677771
Alignment:
Q  286 tgtttggattgacttatttgagtttatctatttg 319  Q
    |||||||||| |||||||||||||||||||||||    
T  36677804 tgtttggattaacttatttgagtttatctatttg 36677771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 7174379 - 7174415
Alignment:
Q  40 tagtccaagaatctctatttccatattccttcataag 76  Q
    ||||||||||||||  |||||||||||||||||||||    
T  7174379 tagtccaagaatcttgatttccatattccttcataag 7174415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 40059381 - 40059409
Alignment:
Q  287 gtttggattgacttatttgagtttatcta 315  Q
    |||||||||||||||||||||||||||||    
T  40059381 gtttggattgacttatttgagtttatcta 40059409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 40085281 - 40085309
Alignment:
Q  287 gtttggattgacttatttgagtttatcta 315  Q
    |||||||||||||||||||||||||||||    
T  40085281 gtttggattgacttatttgagtttatcta 40085309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 89192 - 89143
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtcaaatatc 85  Q
    |||||||||||||| ||| |||||||||||||||||||||  ||||||||    
T  89192 aatttagtccaagactctttatttccatattccttcataacccaaatatc 89143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 1096648 - 1096615
Alignment:
Q  279 taaggcatgtttggattgacttatttgagtttat 312  Q
    ||||||||||||||||||||||||||||||||||    
T  1096648 taaggcatgtttggattgacttatttgagtttat 1096615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 10727495 - 10727460
Alignment:
Q  286 tgtttggattgacttatttgagtttatctatttgta 321  Q
    |||||||||||||||||||||||||||||| |||||    
T  10727495 tgtttggattgacttatttgagtttatctacttgta 10727460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 5290744 - 5290704
Alignment:
Q  272 atagttataaggcatgtttggattgacttatttgagtttat 312  Q
    |||||| ||||||||||||| ||||||| ||||||||||||    
T  5290744 atagttttaaggcatgtttgaattgactcatttgagtttat 5290704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 37617382 - 37617415
Alignment:
Q  284 catgtttggattgacttatttgagtttatctatt 317  Q
    ||||||||||||||||||||||||||||||||||    
T  37617382 catgtttggattgacttatttgagtttatctatt 37617415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 314
Target Start/End: Original strand, 5886905 - 5886939
Alignment:
Q  280 aaggcatgtttggattgacttatttgagtttatct 314  Q
    |||||||||||||||||||||||||||| ||||||    
T  5886905 aaggcatgtttggattgacttatttgagcttatct 5886939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Original strand, 24417655 - 24417685
Alignment:
Q  287 gtttggattgacttatttgagtttatctatt 317  Q
    |||||||||||||||||||||||||||||||    
T  24417655 gtttggattgacttatttgagtttatctatt 24417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 172492 - 172521
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  172492 tgtttggattgacttatttgagtttatcta 172521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 23445488 - 23445455
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatcta 315  Q
    ||||| ||||||||||||||||||||||||||||    
T  23445488 ggcatctttggattgacttatttgagtttatcta 23445455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 29045852 - 29045881
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  29045852 tgtttggattgacttatttgagtttatcta 29045881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 30013998 - 30014027
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  30013998 tgtttggattgacttatttgagtttatcta 30014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 28467586 - 28467558
Alignment:
Q  284 catgtttggattgacttatttgagtttat 312  Q
    |||||||||||||||||||||||||||||    
T  28467586 catgtttggattgacttatttgagtttat 28467558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 44917441 - 44917473
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatct 314  Q
    |||||||||||||||||||||||||||||||||    
T  44917441 ggcatgtttggattgacttatttgagtttatct 44917473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 317
Target Start/End: Complemental strand, 20526597 - 20526566
Alignment:
Q  286 tgtttggattgacttatttgagtttatctatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  20526597 tgtttggattgacttatttgagtttatctatt 20526566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 28691755 - 28691783
Alignment:
Q  286 tgtttggattgacttatttgagtttatct 314  Q
    |||||||||||||||||||||||||||||    
T  28691755 tgtttggattgacttatttgagtttatct 28691783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 40371569 - 40371601
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatct 314  Q
    |||||||||||||||||||||||||| ||||||    
T  40371569 ggcatgtttggattgacttatttgagcttatct 40371601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 44822109 - 44822081
Alignment:
Q  286 tgtttggattgacttatttgagtttatct 314  Q
    |||||||||||||||||||||||||||||    
T  44822109 tgtttggattgacttatttgagtttatct 44822081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 52169939 - 52169971
Alignment:
Q  286 tgtttggattgacttatttgagtttatctattt 318  Q
    |||||||||||||||||||||||||||||||||    
T  52169939 tgtttggattgacttatttgagtttatctattt 52169971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 315
Target Start/End: Complemental strand, 3891743 - 3891713
Alignment:
Q  285 atgtttggattgacttatttgagtttatcta 315  Q
    |||||||||||||||||||||||||||||||    
T  3891743 atgtttggattgacttatttgagtttatcta 3891713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 31851609 - 31851571
Alignment:
Q  277 tataaggcatgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  31851609 tataaggcatgtttggattgatttattcgagtttatcta 31851571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 314
Target Start/End: Original strand, 37575849 - 37575883
Alignment:
Q  280 aaggcatgtttggattgacttatttgagtttatct 314  Q
    ||||| |||||||||||||||||||||||||||||    
T  37575849 aaggcttgtttggattgacttatttgagtttatct 37575883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 44638141 - 44638171
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttat 312  Q
    |||||||||||||||||||||||||||||||    
T  44638141 ggcatgtttggattgacttatttgagtttat 44638171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 7367973 - 7368002
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  7367973 tgtttggattgacttatttgagtttatcta 7368002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 12163035 - 12163006
Alignment:
Q  285 atgtttggattgacttatttgagtttatct 314  Q
    ||||||||||||||||||||||||||||||    
T  12163035 atgtttggattgacttatttgagtttatct 12163006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 22662170 - 22662199
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  22662170 tgtttggattgacttatttgagtttatcta 22662199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 22666649 - 22666678
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  22666649 tgtttggattgacttatttgagtttatcta 22666678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 41336911 - 41336882
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  41336911 tgtttggattgacttatttgagtttatcta 41336882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 52428815 - 52428786
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  52428815 tgtttggattgacttatttgagtttatcta 52428786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 55419831 - 55419782
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtcaaatatc 85  Q
    |||||||||||||||||| ||||||||||  |||||||||| || |||||    
T  55419831 aatttagtccaagaatctttatttccataaaccttcataagccagatatc 55419782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 46175591 - 46175623
Alignment:
Q  285 atgtttggattgacttatttgagtttatctatt 317  Q
    |||||||||||||||||||||||| ||||||||    
T  46175591 atgtttggattgacttatttgagtatatctatt 46175623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 317
Target Start/End: Complemental strand, 9174971 - 9174936
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatctatt 317  Q
    |||||||||||||||||||||||||| |||||||||    
T  9174971 ggcatgtttggattgacttatttgagcttatctatt 9174936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 40335786 - 40335821
Alignment:
Q  280 aaggcatgtttggattgacttatttgagtttatcta 315  Q
    ||||| ||||||||||||||||||||||||||||||    
T  40335786 aaggcctgtttggattgacttatttgagtttatcta 40335821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 9107245 - 9107212
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatcta 315  Q
    |||| |||||||||||||||||||||||||||||    
T  9107245 ggcaggtttggattgacttatttgagtttatcta 9107212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 32010096 - 32010067
Alignment:
Q  286 tgtttggattgacttatttgagtttatcta 315  Q
    ||||||||||||||||||||||||||||||    
T  32010096 tgtttggattgacttatttgagtttatcta 32010067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 583701 - 583729
Alignment:
Q  289 ttggattgacttatttgagtttatctatt 317  Q
    |||||||||||||||||||||||||||||    
T  583701 ttggattgacttatttgagtttatctatt 583729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 34736442 - 34736474
Alignment:
Q  282 ggcatgtttggattgacttatttgagtttatct 314  Q
    |||||||||||||||||||||||||| ||||||    
T  34736442 ggcatgtttggattgacttatttgagcttatct 34736474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 39105615 - 39105587
Alignment:
Q  287 gtttggattgacttatttgagtttatcta 315  Q
    |||||||||||||||||||||||||||||    
T  39105615 gtttggattgacttatttgagtttatcta 39105587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 8746 - 8779
Alignment:
Q  284 catgtttggattgacttatttgagtttatctatt 317  Q
    |||||||||||||| |||||||||||||||||||    
T  8746 catgtttggattgatttatttgagtttatctatt 8779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 32331 - 32376
Alignment:
Q  36 aatttagtccaagaatctctatttccatattccttcataagtcaaa 81  Q
    |||||| ||||||| ||| |||||||||||||||||||||| ||||    
T  32331 aatttaatccaagagtctttatttccatattccttcataagccaaa 32376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University