View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11831_high_16 (Length: 294)

Name: NF11831_high_16
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11831_high_16
NF11831_high_16
[»] chr5 (5 HSPs)
chr5 (14-294)||(29711933-29712213)
chr5 (18-283)||(29688422-29688684)
chr5 (21-289)||(29696532-29696800)
chr5 (24-113)||(179357-179446)
chr5 (31-155)||(9120069-9120193)
[»] chr4 (9 HSPs)
chr4 (26-165)||(48147334-48147473)
chr4 (24-61)||(48863570-48863607)
chr4 (84-173)||(49043781-49043870)
chr4 (194-282)||(48903421-48903509)
chr4 (85-144)||(48864395-48864454)
chr4 (71-157)||(7790426-7790512)
chr4 (71-113)||(7878729-7878771)
chr4 (24-61)||(49040871-49040908)
chr4 (81-153)||(48853037-48853109)
[»] chr8 (2 HSPs)
chr8 (192-274)||(4030300-4030382)
chr8 (86-144)||(15349244-15349302)
[»] chr1 (3 HSPs)
chr1 (27-66)||(24310521-24310560)
chr1 (27-61)||(24367473-24367507)
chr1 (27-61)||(24416083-24416117)
[»] chr7 (1 HSPs)
chr7 (241-279)||(30124824-30124862)
[»] chr3 (1 HSPs)
chr3 (192-274)||(47451412-47451494)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 29712213 - 29711933
Alignment:
Q  14 gtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712213 gtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaa 29712114  T
Q  114 tgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgtt 213  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29712113 tgtgacatcttcttggactaagactcttgttttgtcttttgatggaattcccagccattatttttgtccgaaatacgatacaaaaagtggtgatatcgtt 29712014  T
Q  214 ggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatgaa 294  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  29712013 ggaacaaatgctggtaatgtattggccaagtataatgagaaaggacaactgctagagcatcagtcctactgtgacaatgaa 29711933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 29688422 - 29688684
Alignment:
Q  18 agtgtatgatttatgggtatttagaggatgtctcagtctatgggatatg-gcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgt 116  Q
    |||||||||||||||| |||| |||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  29688422 agtgtatgatttatggctattcagaggatgtctcagtctatttgatatgtgcac-tgataatggtacagttgaaatatgggtgatgaaaaaatacaatgt 29688520  T
Q  117 gacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttgga 216  Q
    |  ||| |||||||| |||| ||| ||| | ||||||| ||  ||||||| ||| || ||||||||||||||   |||||||||||||||||||||||||    
T  29688521 gcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttttgtccgaaatattgtacaaaaagtggtgatatcgttgga 29688620  T
Q  217 acaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctact 283  Q
    ||    |  | |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  29688621 ac---cgacgataatgtattggccaagtataatgataaaggacagctgctagagcatcactcctact 29688684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 289
Target Start/End: Original strand, 29696532 - 29696800
Alignment:
Q  21 gtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgaca 120  Q
    ||||||||||||||| | |||||||||||||  ||||||| ||||    | |||||  | |||| || |||||||||||||||||||||||||||||  |    
T  29696532 gtatgatttatgggtgtatagaggatgtctcgctctatggcatattttgcctgatagagttacatttcaaatatgggtgatggaaaaatacaatgtgcaa 29696631  T
Q  121 tcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaa 220  Q
    || ||||||||||||| ||||||  ||||||||||||| | |||   ||| |  ||||| ||||||||| ||||||||||||||||||||||||||| ||    
T  29696632 tcctcttggactaagactcttgtcctgtcttttgatggcaatcctgctcactccttttggccgaaatactatacaaaaagtggtgatatcgttggaagaa 29696731  T
Q  221 atgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgaca 289  Q
    |     ||  || ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  29696732 acatgcgttgtgcattggccaagtataatgacaaaggacagctgcaagaacatcactcctactgtgaca 29696800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 179357 - 179446
Alignment:
Q  24 tgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaa 113  Q
    |||| ||||||||||| ||  || ||||||| |||||| |||||   ||||||||| |||||||||||||||||||||| || |||||||    
T  179357 tgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaa 179446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 9120069 - 9120193
Alignment:
Q  31 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 130  Q
    ||||||||| ||| || ||||||| |||||| |||||    || ||||| |||||||||||||||||||||| || ||||||| |||   || |||||||    
T  9120069 tgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttgga 9120168  T
Q  131 ctaagattcttgttttgtcttttga 155  Q
      || | ||||||||||||| ||||    
T  9120169 agaaaactcttgttttgtctattga 9120193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 48147473 - 48147334
Alignment:
Q  26 atttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttc 125  Q
    |||| ||||||||| ||  || ||||||||||  || |||||  ||||| ||| | | ||||||||||||||||||| || ||||||| |||   || ||    
T  48147473 atttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 48147374  T
Q  126 ttggactaagattcttgttttgtcttttgatggaattccc 165  Q
    ||||||||||| ||||  ||||||| ||||||| ||||||    
T  48147373 ttggactaagactcttaatttgtctattgatggcattccc 48147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 48863570 - 48863607
Alignment:
Q  24 tgatttatgggtatttagaggatgtctcagtctatggg 61  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48863570 tgatttatgggtatttagaggatctctcagtctatggg 48863607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 49043870 - 49043781
Alignment:
Q  84 agttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcatta 173  Q
    ||||||||||||||||||| || ||||||| |||   || || |||||||||| ||||||||| ||| ||||||  ||||||| ||||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcatta 49043781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 48903421 - 48903509
Alignment:
Q  194 caaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctac 282  Q
    |||||| |||||| ||| |||||||||| | ||||| |  |||||  ||||||||||||||||||||  | |||||| |||||||||||    
T  48903421 caaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagtatcactcctac 48903509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 48864395 - 48864454
Alignment:
Q  85 gttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 144  Q
    |||||||||||||||||| || ||||||| |||   || |||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgtt 48864454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 7790426 - 7790512
Alignment:
Q  71 atgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatg 157  Q
    ||||||||| |||| ||||||||||||||||| || ||||||| |||   || ||||||||||| | ||||||| | ||| ||||||    
T  7790426 atgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatg 7790512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 7878729 - 7878771
Alignment:
Q  71 atgataatggtacagttgaaatatgggtgatggaaaaatacaa 113  Q
    ||||||||| |||||||||||||||||||||| || |||||||    
T  7878729 atgataatgatacagttgaaatatgggtgatgaaagaatacaa 7878771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 49040908 - 49040871
Alignment:
Q  24 tgatttatgggtatttagaggatgtctcagtctatggg 61  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  49040908 tgatttatgggtatttaaaggatttctcagtctatggg 49040871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 48853037 - 48853109
Alignment:
Q  81 tacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtctttt 153  Q
    |||||||||||||||||| ||| || ||||||| |||   || ||||||||||||| ||||||| | ||||||    
T  48853037 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttctttt 48853109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 4030382 - 4030300
Alignment:
Q  192 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc 274  Q
    ||||| ||||||||||||  |||||||| ||| ||||| || |||||  |||||| |||||||||||||  ||||||||||||    
T  4030382 tacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagcatc 4030300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 15349244 - 15349302
Alignment:
Q  86 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 144  Q
    ||||||||||||||||| || ||||||| ||||  ||||||||||| ||||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt 15349302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 24310521 - 24310560
Alignment:
Q  27 tttatgggtatttagaggatgtctcagtctatgggatatg 66  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24310521 tttatgggtatttagaggatttctcagtctatgggttatg 24310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 24367473 - 24367507
Alignment:
Q  27 tttatgggtatttagaggatgtctcagtctatggg 61  Q
    |||||||||||||||||||| ||||||||||||||    
T  24367473 tttatgggtatttagaggatttctcagtctatggg 24367507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 24416083 - 24416117
Alignment:
Q  27 tttatgggtatttagaggatgtctcagtctatggg 61  Q
    |||||||||||||||||||| ||||||||||||||    
T  24416083 tttatgggtatttagaggatttctcagtctatggg 24416117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 30124862 - 30124824
Alignment:
Q  241 aagtataatgacaaaggacaactgctagagcatcactcc 279  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  30124862 aagtttaatgacaaaggacagctgctagagcatcactcc 30124824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 47451494 - 47451412
Alignment:
Q  192 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc 274  Q
    ||||||||||||||||||  |||||||| ||| || ||  | |||||  ||||||||||||||||||||  || |||||||||    
T  47451494 tacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatc 47451412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University