View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_high_2 (Length: 715)
Name: NF11831_high_2
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 640; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 14 - 696
Target Start/End: Original strand, 5022003 - 5022675
Alignment:
| Q |
14 |
ggacatcaaaattatcaagaactattcaaatttcgtcatgctttacttcaaaatgtgattgatggagcttttggagttctcaagaaaagatttccgatta |
113 |
Q |
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| T |
5022003 |
ggacctcaaaattatcaagaactattcaaatttcgtcatgctttacttcaaaatgtgattgatggagcttttggagttctcaagaaaagatttccgatta |
5022102 |
T |
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| Q |
114 |
caactggtgacaatgaatcatatttttcaattcgaaccatgacacgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattga |
213 |
Q |
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| T |
5022103 |
caactggtgacaatgaatcatatttttcaattcgaaccatgacacgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattga |
5022202 |
T |
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| Q |
214 |
tgaacaaataattgctgaagtagatcgtgaattgctacatgacaaaagtcgatacatatcaaagaaactgaaacttgaagtggactctgaagaaaaaccg |
313 |
Q |
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| T |
5022203 |
tgaacaaataattgctgaagtagatcgtgaattgctacatgacaaaagtcgatacatatcaaagaaacggaaacttgaagtggactctgaagaaaaaccg |
5022302 |
T |
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| Q |
314 |
agttcaagtaagaaaattgctttggaaatgtggaatgcttatgaagtataatatgctgaatgtatatctcatgtttctggctgttggttttacatatttt |
413 |
Q |
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| T |
5022303 |
agttcaagtaagaaaattgctttggaaatgtggaatgcttatgaagtat----------atgtatatctcatgtttctggctgttggttttacatatttt |
5022392 |
T |
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| Q |
414 |
gtttgtgtcagcattttgaacacggatttcatgtgtataaagtgacaaaattattcaggcccaaactgaactttggtccagcacaaccctaaaaaattgg |
513 |
Q |
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| T |
5022393 |
gtttgtgtcagcattttgaacacggatttcatgtgtataaagtgacaaaattattcaggcccaaactgaactttggtccagcacaaccctaaaaaattgg |
5022492 |
T |
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| Q |
514 |
tagatgcagggagggccctgaacagagctgccagagcatggtgtgatgttatatatattaatatagaaaacaggacatgtcctgaagttatgtctgtttt |
613 |
Q |
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| T |
5022493 |
tagatgcagggagggccctgaacagagctgccagagcatggtgtgatgttatatatattaatatagaaaacaggacatgtcctgaagttatgtctgtttt |
5022592 |
T |
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| Q |
614 |
tcatctttgatttgataactaatactaattctttttatgcttggagtattaactatttcaaaggaaatggattgcatgcagtc |
696 |
Q |
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| T |
5022593 |
tcatctttgatttgataactaatactaattctttttatgcttggagtattaactatttcaaaggaaatggattgcatgcagtc |
5022675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 5019430 - 5019511
Alignment:
| Q |
158 |
cgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatc |
239 |
Q |
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| T |
5019430 |
cgtataatcattgcttgttgtgttttgcataactttcttatggaagttgacattgacgaacaaatgattgctgaagtagatc |
5019511 |
T |
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