View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_high_6 (Length: 535)
Name: NF11831_high_6
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Complemental strand, 2946599 - 2946071
Alignment:
| Q |
8 |
cacagagaaagatcaaaagaagcacgaatcagaatgtacaactacatattagaacacaaaacctgcaaggaagactcatggtagaaatttagacttgaca |
107 |
Q |
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| T |
2946599 |
cacagagaaagatcaaaagaagcacgaatcagaatgtacaactacatattagaacacaaaacctgcaagaaagactcatggtagaaatttagacttgaca |
2946500 |
T |
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| Q |
108 |
tctcaattattcgacatttttcaagacaaaaatgcaacatttttgttacgtaagccacaaaagtaacaataacggcctcttaatttaaagtcacttaaaa |
207 |
Q |
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| T |
2946499 |
tctcaattattcgacatttttcaagacaaaaatgcaacatttttgttacgtaagccacaaaagtaacaataacggcctcttaatttaaagtcacttaaaa |
2946400 |
T |
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| Q |
208 |
actgtgatctggagtttgccttactagggaagtgagggtggtataaaaaagcatgtatcagagtttgactttgtaattaccaaggcagtgagagagggga |
307 |
Q |
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| T |
2946399 |
actgtgatctggagtttgccttactagggaagtgagggtggtataaaaaagcatgtatcagagtttgactttgtaattaccaaggcagtgagagagggga |
2946300 |
T |
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| Q |
308 |
agggaagtttcactttgtaagagtgtaaatgtttcaaattatatattacc-nnnnnnnntgtttcagattatatatttaccatacagatatatttcacgt |
406 |
Q |
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| T |
2946299 |
agggaagtttcactttgtaagagtgtaaatgtttcaaattatatattaccaaaaaaaaatgtttcagattatatatttactatacagatatatttcacgt |
2946200 |
T |
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| Q |
407 |
gacaacaatgctacattctaaatccaccgttcaatgacttccattcctcatttcttgccctcaacactccattaaaaagggctagaaaatggagaacgaa |
506 |
Q |
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| T |
2946199 |
gacaacaatgttacattctaaatccaccgttcaataacttccattcctcatttcttgccctccacactccattaaaaagggctagaaaatggagaacgaa |
2946100 |
T |
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| Q |
507 |
gactagtggaaacgaaataacaaataaaa |
535 |
Q |
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| T |
2946099 |
gactagtggaaacgaaataacaaataaaa |
2946071 |
T |
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