View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11831_high_7 (Length: 439)
Name: NF11831_high_7
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 21374259 - 21374666
Alignment:
| Q |
19 |
cccaagacatcaagatttggactcattccccgacagttatgtactctgttaagagtggttatcagtggttgacttcaaactctctttcttttgcaggtca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21374259 |
cccaagacatcaagatttggactcattccccgacagttatgtactctgttaagagtggttatcagtggttgacttcaaactctctttcttttgcaggtca |
21374358 |
T |
|
| Q |
119 |
gactcagctgggaacatggaaatggatttggaagcttaacctcccagagaatctgaagcattttatttggttagctatgcatggtaaccttccaacgaat |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21374359 |
gactcagctgggaacatgacaatggatttggaagcttaacctcccagagaatctgaagcattttatttggttagctatgcatggtaaccttccaacgaat |
21374458 |
T |
|
| Q |
219 |
gcatttcgggctggtagacatttaacctcagattcatcatgcaagagctgtggagctagtattgagtcacttcttcacacctttagagattgccctctct |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21374459 |
gcatttcgggatggtagacatttaacctcagattcatcatgcaagagctgtggagctagtattgagtcacttcttcacacctttagagattgccctctct |
21374558 |
T |
|
| Q |
319 |
cattggcgatatgggatgccttgttgttcaacaaagatacaaatttcaattctcaggatttcaattgatggttcaaacattatccccttgctcctaatgg |
418 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
21374559 |
cattggcgatctgggatgccttgttgttcaacaaagatacaaattccaattctcaggatttcaattggtggttcaaacattatgcccttgctcctaatgg |
21374658 |
T |
|
| Q |
419 |
taatatct |
426 |
Q |
| |
|
|||||||| |
|
|
| T |
21374659 |
taatatct |
21374666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 205 - 426
Target Start/End: Complemental strand, 19817086 - 19816865
Alignment:
| Q |
205 |
accttccaacgaatgcatttcgggctggtagacatttaacctcagattcatcatgcaagagctgtggagctagtattgagtcacttcttcacacctttag |
304 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
19817086 |
accttccaacaaatgcttttcgggctagtagacatttaacctcagattcatcatgcaagagatgtggagctaatattgagtcacttcttcacacctttag |
19816987 |
T |
|
| Q |
305 |
agattgccctctctcattggcgatatgggatgccttgttgttcaacaaagatacaaatttcaattctcaggatttcaattgatggttcaaacattatccc |
404 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || || || ||||| ||||||||||||||| || |
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|
| T |
19816986 |
agattgccctctctcattggcgatctgggatgccttgttgttcaacaaagactcaaatttcaattcccaagaatttaattggtggttcaaacattatgcc |
19816887 |
T |
|
| Q |
405 |
cttgctcctaatggtaatatct |
426 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19816886 |
cttgctcctaatggtaatatct |
19816865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 36252114 - 36252057
Alignment:
| Q |
63 |
tctgttaagagtggttatcagtggttgacttcaaactctctttcttttgcaggtcaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
36252114 |
tctgttaagagtggttatcagtggttgatttcaaactctctttcttttgtaggtcaga |
36252057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 26293207 - 26292802
Alignment:
| Q |
19 |
cccaagacatcaagatttggactcattccccgacagttatgtactctgttaagagtggttatcagtggttgacttcaaactctctttcttttgcaggtca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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|
| T |
26293207 |
cccaagacatcaagatttggactcattccccaacaggtatgtactctgttaagagtggttatcagtggttgacttcaaactgtctttcttttgcaggcca |
26293108 |
T |
|
| Q |
119 |
gactcagctgggaacatggaaatggatttggaagcttaacctcccagagaatctgaagcattttatttggttagctatgcatggtaaccttccaacgaat |
218 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
26293107 |
gactcagcaggaaacatggcaatggatttggaagctccacctcccagagaatctgaagcattttatttggttggctatgcatggtaaccttccaacgaat |
26293008 |
T |
|
| Q |
219 |
gcatttcgggctggtagacatttaacctcagattcatcatgcaagagctgtggagctagtattgagtcacttcttcacacctttagagattgccctctct |
318 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26293007 |
gcatttcgagctggcaaacatttaacctcagattcatcatgcaagagatgtggagctagtattgagtcacttcttcacacttttagagattgccctctct |
26292908 |
T |
|
| Q |
319 |
cattggcgatatgggatgccttgttgttcaacaaagatacaaatttcaattctcaggatttcaattgatggttcaaacattatccccttgctcctaatgg |
418 |
Q |
| |
|
| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||| |
|
|
| T |
26292907 |
ctttggcgatctgggatgacttgttattcaacaaagatacaaatttcaattctcaggatttcaattggtggttcaaacattatgctcttgctcttaatgg |
26292808 |
T |
|
| Q |
419 |
taatat |
424 |
Q |
| |
|
|||||| |
|
|
| T |
26292807 |
taatat |
26292802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 7021587 - 7021842
Alignment:
| Q |
19 |
cccaagacatcaagatttggactcattccccgacagttatgtactctgttaagagtggttatcagtggttgacttcaaactctctttcttttgcaggtca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7021587 |
cccaagacatcaagatttggactcattccccaatagttatgtactctgttaagattggttatcattggttgacttcaaactctctttcttttgcagatca |
7021686 |
T |
|
| Q |
119 |
gactcagctgggaacatggaaatggatttggaagcttaacctcccagagaatctgaagcattttatttggttagctatgcatggtaaccttccaacgaat |
218 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7021687 |
gactcagccgaaaacatggcaatggatttggaagctccacctcccagagaatctgaagcattttatttggttggctatgcatggtaaccttccaacgaat |
7021786 |
T |
|
| Q |
219 |
gcatttcgggctggtagacatttaacctcagattcatcatgcaagagctgtggagc |
274 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7021787 |
gcatttcgggctgatagacatttaacctcagattcatcatgcaagagatgtggagc |
7021842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 267 - 426
Target Start/End: Original strand, 7022200 - 7022362
Alignment:
| Q |
267 |
tgtggagctagtattgagtcact---tcttcacacctttagagattgccctctctcattggcgatatgggatgccttgttgttcaacaaagatacaaatt |
363 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||| |
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|
| T |
7022200 |
tgtggagctagtattgagtcactacttcttcacacttttagagattgccctctctctttggcgatctgcgatgccttgtttttcaacaaagatacaaatt |
7022299 |
T |
|
| Q |
364 |
tcaattctcaggatttcaattgatggttcaaacattatccccttgctcctaatggtaatatct |
426 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7022300 |
tcaattctcaggatttcaattggtggttcaaacattatgcccttgctcctaatggtaatatct |
7022362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 54874514 - 54874921
Alignment:
| Q |
19 |
cccaagacatcaagatttggactcattccccgacagttatgtactctgttaagagtggttatcagtggttgacttcaaactctctttcttttgcaggtca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54874514 |
cccaagacatcaagatttggactcattcgcaatcaagtatgtactctgttaaaagtggttatcagtggttgacttcaaactctctttcttttgcaggtca |
54874613 |
T |
|
| Q |
119 |
gactcagctgggaacatggaaatggatttggaagcttaacctcccagagaatctgaagcattttatttggttagctatgcatggtaaccttccaacgaat |
218 |
Q |
| |
|
||| |||| || ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
54874614 |
gacacagcaggaaacatggtaatggatttggaagctcaacctcccagagaatctgaaacattttatttggttggctgtgcatggtaaccttccaacgaat |
54874713 |
T |
|
| Q |
219 |
gcatttcgggctggtagacatttaacctcagattcatcatgcaagagctgtggagctagtattgagtcacttcttcacacctttagagattgccctctct |
318 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54874714 |
tcttttcgggctagtagacatttaacctcagattcatcatgcaagagatgtggagctaatattgagtcacttcttcacacctttagagattgccctctct |
54874813 |
T |
|
| Q |
319 |
cattggcgatatgggatgccttgttgttcaacaaagatacaaatttcaattctcaggatttcaattgatggttcaaacattatccccttgctcctaatgg |
418 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
54874814 |
cattggcgatctgggatgccttgttgttcaacaaagattcaaatttcaattcccaagattttaattggtggttcaaacattatgtccttgctcctaatgg |
54874913 |
T |
|
| Q |
419 |
taatatct |
426 |
Q |
| |
|
|||||||| |
|
|
| T |
54874914 |
taatatct |
54874921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 15918185 - 15917776
Alignment:
| Q |
19 |
cccaagacatcaagatttggactcattccccgacagttatgtactctgttaagagtggttatcagtggttgacttcaaactctctttcttttgcaggtca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
15918185 |
cccaagacatcaagatttggactcattccccatcaggtatgtactctgttaaaagtggttatcagtggttgacatcaaactctctttattttgcaggtta |
15918086 |
T |
|
| Q |
119 |
gactcagctgggaacatggaaatggatttggaagcttaacctcccagagaatctgaagcat-tttatttggttagctatgcatggtaaccttccaacgaa |
217 |
Q |
| |
|
|||||||| || |||||| | ||||||||||| || ||||| | |||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
15918085 |
gactcagcaggaaacatgacattggatttggaaactcaaccttctagagaatctgaaacatatttattttgttggctatgcatggtaaccttccaacgaa |
15917986 |
T |
|
| Q |
218 |
tgcatttcgggctggtagacatttaacctcagattcatcatgcaagagctgtggagctagtattgagtcacttcttcacacc-tttagagattgccctct |
316 |
Q |
| |
|
||||||| | ||| ||||| ||||||||| | |||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| ||| || || ||| |
|
|
| T |
15917985 |
tgcatttagtgctagtagatatttaaccttatattcatcatgcaagagatgtggatctagtattgagtcactttttcacaccttttggagttttccatct |
15917886 |
T |
|
| Q |
317 |
ctcattggcgatatgggatgccttgttgttcaacaaagatacaaatttcaattctcaggatttcaattgatggttcaaacattatccccttgctcctaat |
416 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| || |||||| ||||||| |
|
|
| T |
15917885 |
ctcattggcgatctgggatgccttgttgttcaacaaagatacaaatttcaattctcaagatttcaattggtggttgaaacatcattcccttgatcctaat |
15917786 |
T |
|
| Q |
417 |
ggtaatatct |
426 |
Q |
| |
|
|||||||||| |
|
|
| T |
15917785 |
ggtaatatct |
15917776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 8567899 - 8567812
Alignment:
| Q |
82 |
agtggttgacttcaaactctctttcttttgcaggtcagactcagctgggaacatggaaatggatttggaagcttaacctcccagagaa |
169 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||| | || |||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
8567899 |
agtggttgacttcaatctctctttcttttgcatgtcagactccacaggaaacatgtcaatggatttggaggctcgacctcccagagaa |
8567812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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