View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_10 (Length: 365)
Name: NF11831_low_10
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 107 - 308
Target Start/End: Complemental strand, 2490684 - 2490483
Alignment:
| Q |
107 |
aaaatagtttttgacgaagcacaacatcaataacaataagcatataaagaaatatcatgagtgtactaaacatggttagtaggcaacttcccatgcataa |
206 |
Q |
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| T |
2490684 |
aaaaaagtttttgacgaagcaccacatcaataacaataagcatataaagaaatatcatgagtgtactaaacatggttattagacaacttcccatgcataa |
2490585 |
T |
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| Q |
207 |
aattccatgtaaaatgatgaatatttttaagggagcttaagattccaaattcaagaccaactcataaccatttcggattaggtcttagtataatgtttag |
306 |
Q |
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| T |
2490584 |
aattccatgtaaaatgatgaatatttgttagggagcttaagattccaaattcaagaccaactcataaccatttcggattaggtcttagtataatgtttag |
2490485 |
T |
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| Q |
307 |
tc |
308 |
Q |
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|| |
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| T |
2490484 |
tc |
2490483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 2491783 - 2491698
Alignment:
| Q |
38 |
tgatcaaacctccaaatcctgatatatcgaggttaccaatcaaactaccatcaaatccgcaatagttgtaaaatagtttttgacga |
123 |
Q |
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| T |
2491783 |
tgataaaacctccaaatcttgatatatcgaggttatcaatcaaactaccatcaaatccgcaatagttgtaaaatagtttttgacga |
2491698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 2491990 - 2491948
Alignment:
| Q |
3 |
aggagcaaagggacgagtaggcacgaccatgtccttgatcaaa |
45 |
Q |
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||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
2491990 |
aggagcataaggacgagtaggcacgaccatgtcctttatcaaa |
2491948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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