View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_11 (Length: 361)
Name: NF11831_low_11
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 65 - 332
Target Start/End: Complemental strand, 10210712 - 10210445
Alignment:
| Q |
65 |
taaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca |
164 |
Q |
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| T |
10210712 |
taaacatatgtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca |
10210613 |
T |
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| Q |
165 |
ccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaaggga |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210612 |
ccatcgccgaccgatgccgtctttgtctcctaaagatatatccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaaggga |
10210513 |
T |
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| Q |
265 |
atatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcctc |
332 |
Q |
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| T |
10210512 |
atatgcatcaccaggtccaggagtttcatacaactagatgtatcaaaattgctctgtggtgtatcctc |
10210445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 65 - 280
Target Start/End: Original strand, 10108453 - 10108665
Alignment:
| Q |
65 |
taaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca |
164 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10108453 |
taaacataagtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttttcctgaacccattcttcacgattcca |
10108552 |
T |
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| Q |
165 |
ccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatatt-aaaggaatggtggctaaggg |
263 |
Q |
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| T |
10108553 |
ccatcgccgaca----ccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaaggaatggtggctaaggg |
10108648 |
T |
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| Q |
264 |
aatatgcatcaccaggt |
280 |
Q |
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|||||||||||| |||| |
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| T |
10108649 |
aatatgcatcacaaggt |
10108665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 84 - 343
Target Start/End: Complemental strand, 10216476 - 10216228
Alignment:
| Q |
84 |
acatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattccaccatcgccgaccgatgccg |
183 |
Q |
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||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |||||| |||| | |||| || |
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| T |
10216476 |
acatcttaaacttttgtgaattaggttctcagaatgcctgttatttatctgcttatcctgaacccatccttcaccattctatcatcacca---------- |
10216387 |
T |
|
| Q |
184 |
tctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtcca |
283 |
Q |
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|||||||||||||| ||| |||||||||||| | || |||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10216386 |
tctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagtctgaaagatattaaaggaatggtggctaagggaatatgcatcacaaggtcca |
10216287 |
T |
|
| Q |
284 |
ggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcctcttagatgtaag |
343 |
Q |
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| T |
10216286 |
ggagtttcatacagccagatgtatc-aaattgctctgtggtgtatcctcttagatgtaag |
10216228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 343
Target Start/End: Complemental strand, 9683170 - 9683054
Alignment:
| Q |
220 |
cagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctct |
319 |
Q |
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|||||||||||||| ||| |||||||||||||| |||| ||||||||||||||| ||| |||| |||| |||||||||||||||| ||||||| |
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| T |
9683170 |
cagatgttgagtcatgtagacattaaaggaatggttgctaggggaatatgcatcacaagg------agttccataaagccagatgtatcaaa-ttgctct |
9683078 |
T |
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| Q |
320 |
gtggtgtatcctcttagatgtaag |
343 |
Q |
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||||| ||||||| |||||||||| |
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| T |
9683077 |
gtggtttatcctcctagatgtaag |
9683054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 10105394 - 10105454
Alignment:
| Q |
4 |
aggtgtcagatcagcttatcctagatccatcatttgtaataccatcaacacaatctttgtct |
65 |
Q |
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| T |
10105394 |
aggtgtcagatcagcttatc-tggatccttccttcgtaataccatcaacacaatctttgtct |
10105454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 9675354 - 9675292
Alignment:
| Q |
3 |
aaggtgtcagatcagcttatcctagatccatcatttgtaataccatcaacacaatctttgtct |
65 |
Q |
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| T |
9675354 |
aaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacacagtgtttgtct |
9675292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10212884 - 10212821
Alignment:
| Q |
1 |
taaaggtgtcagatcagcttatcctagatccatcatttgtaataccatcaacacaatctttgtctaaa |
68 |
Q |
| |
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||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| |
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| T |
10212884 |
taaaggtgttagatcagcttat----gatccatcctttgtaattccatcaacacaatctttgtttaaa |
10212821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 9683495 - 9683423
Alignment:
| Q |
67 |
aacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat |
139 |
Q |
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||||||| |||||||| ||||||||||||| ||| ||||||| |||||||||| ||||||| |||||||| |
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| T |
9683495 |
aacatatatgcttatatgcatcttaaactttcgtgtatcaggttctcagaatgccggttatttccctgcttat |
9683423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 10105184 - 10105248
Alignment:
| Q |
75 |
tgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat |
139 |
Q |
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||||||| |||||||||| ||||||||||||||| | | ||||| |||||||| ||||||||| |
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| T |
10105184 |
tgcttatgtacatcttaaaattttgtgaatcaggttcgccaaatgcctgttatttctctgcttat |
10105248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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