View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_16 (Length: 342)
Name: NF11831_low_16
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_16 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 23430921 - 23431240
Alignment:
| Q |
1 |
gaggtgaccccaccagaaatatttcatcattttctcaatatcatcacaaagagatgatgttaaagtaaacatgatcctaaaataaattgggatagcttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23430921 |
gaggtgaccccaccagaaatatttcatcattttctcaatatcatcacaaagagatgatgttaaagtaaacatgatcctaaaataaattgggatagcttga |
23431020 |
T |
|
| Q |
101 |
agcagaaattgtattacaacctcaagtctctatgtggaaagacttcactactccaagaattaattttcctccaacttagatctttgattaagctaaaagt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23431021 |
agcagaaattatattacaacctcaagtctctatgtggaaagactttactactccaagaattaattttcctccaacttagatctttgattaaactaaaagt |
23431120 |
T |
|
| Q |
201 |
ggacttcttacttcttcatataatcgaatgaaaaacccaaatac-ttacatgttccaagcaccgaataataaactatttctacttatataatccgctttt |
299 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23431121 |
ggacttcttacttcttcatataatcgaatg-aaaactcaaatactttacatgttcaaagcaccgaataataaactatttctacttatataatcccctttt |
23431219 |
T |
|
| Q |
300 |
gcgagaatcccattttgacca |
320 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
23431220 |
gcgagaatcccattttaacca |
23431240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 26382865 - 26382926
Alignment:
| Q |
5 |
tgaccccaccagaaatatttcatcattttctcaatatcatcacaaagagatgatgttaaagt |
66 |
Q |
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|||||||||||||| | |||||||| || ||||| ||||||||||||||||| | |||||| |
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| T |
26382865 |
tgaccccaccagaatgaattcatcatcttttcaatctcatcacaaagagatgacggtaaagt |
26382926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 56 - 327
Target Start/End: Complemental strand, 8687726 - 8687456
Alignment:
| Q |
56 |
gatgttaaagtaaacatgatcctaaaataaattgggatagcttgaagcagaaattgtattacaacctcaagtctctatgtggaaagacttcactactcca |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8687726 |
gatgttaaagtaaacatgatcctaaaataaattgggatagcttgaagcagaaattgtattacaacctcaagtctctatgtggaaagactttactactcca |
8687627 |
T |
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| Q |
156 |
agaattaattttcctccaacttagatctttgattaagctaaaagtggacttcttacttcttcatataatcgaatgaaaaacccaaatacttacatgttcc |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8687626 |
agaattaattttcctccaacttagatctttgattaagctaaaagtggacttcttacttcttcatataatcgaatg-aaaacccaaatacttacatgttcc |
8687528 |
T |
|
| Q |
256 |
aagcaccgaataataaactatttctacttatataatccgcttttgcgagaatcccattttgaccatgatgtc |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8687527 |
aagcaccgaataataaactatttctacttatataatccgcttttgcgagaatcccattttgaccatgatgtc |
8687456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8689196 - 8689138
Alignment:
| Q |
1 |
gaggtgaccccaccagaaatatttcatcattttctcaatatcatcacaaagagatgatg |
59 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8689196 |
gaggtgaccccaccaaaaatatttcatcattttctcaatatcatcacaaagagatgatg |
8689138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 33348517 - 33348456
Alignment:
| Q |
5 |
tgaccccaccagaaatatttcatcattttctcaatatcatcacaaagagatgatgttaaagt |
66 |
Q |
| |
|
|||||||||||||| | |||||||| || ||||| ||||||||||||||||| | |||||| |
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|
| T |
33348517 |
tgaccccaccagaatgaattcatcatcttttcaatctcatcacaaagagatgacggtaaagt |
33348456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 45420143 - 45420094
Alignment:
| Q |
5 |
tgaccccaccagaaatatttcatcattttctcaatatcatcacaaagaga |
54 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||| |||||||||||||| |
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| T |
45420143 |
tgaccccaccagaaagagttcatcattttttcaatttcatcacaaagaga |
45420094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 53709702 - 53709763
Alignment:
| Q |
5 |
tgaccccaccagaaatatttcatcattttctcaatatcatcacaaagagatgatgttaaagt |
66 |
Q |
| |
|
|||||||||||||| | |||||||| || ||||| ||||||||||||||||| | |||||| |
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|
| T |
53709702 |
tgaccccaccagaatgaattcatcatcttgtcaatctcatcacaaagagatgacggtaaagt |
53709763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 204696 - 204740
Alignment:
| Q |
4 |
gtgaccccaccagaaatatttcatcattttctcaatatcatcaca |
48 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||| |||||||| |
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|
| T |
204696 |
gtgaccccaccaaaaagaattcatcattttctcaatttcatcaca |
204740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 21503560 - 21503516
Alignment:
| Q |
4 |
gtgaccccaccagaaatatttcatcattttctcaatatcatcaca |
48 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||| |||||||| |
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|
| T |
21503560 |
gtgaccccaccaaaaagaattcatcattttctcaatttcatcaca |
21503516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 13501867 - 13501823
Alignment:
| Q |
4 |
gtgaccccaccagaaatatttcatcattttctcaatatcatcaca |
48 |
Q |
| |
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|||||||||||| ||| | ||||||||||||||||| |||||||| |
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|
| T |
13501867 |
gtgaccccaccaaaaagaattcatcattttctcaatttcatcaca |
13501823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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