View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_17 (Length: 332)
Name: NF11831_low_17
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 26710882 - 26710997
Alignment:
| Q |
204 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagaataaa-gagtgtaatacacaacaacaatcaacaaaggagatacataatcaaccaaat |
302 |
Q |
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| T |
26710882 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagtataaaagagtgtaatacacaacaacaatcaacaaaggagatacataatcaaccaaat |
26710981 |
T |
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| Q |
303 |
atataaagctatttct |
318 |
Q |
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|||||||||||||||| |
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| T |
26710982 |
atataaagctatttct |
26710997 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26710685 - 26710783
Alignment:
| Q |
1 |
attcaaaatattaacaaggatgtacataaacacaatagatgcaagactaacacatgacccacatggttagaatggacagacctactctgataccactaa |
99 |
Q |
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|||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||| | | ||||| |||||||| ||||||||||||||| |
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| T |
26710685 |
attcaaaatattaagaaggatgtacacaaacacaacagatgcaagactgacacatgacccacacgatctgaatgaacagacctgctctgataccactaa |
26710783 |
T |
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