View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11831_low_18 (Length: 310)

Name: NF11831_low_18
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11831_low_18
NF11831_low_18
[»] chr1 (1 HSPs)
chr1 (18-310)||(26038499-26038791)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 26038499 - 26038791
Alignment:
Q  18 catcattgtacttaaaggagacatcacagaatttcaggtcccccgtaacatggtccaaatcaacagcatctggtttctcaaccacctattattcagaaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26038499 catcattgtacttaaaggagacatcacagaatttcaggtcccccgtaacatggtccaaatcaacagcatctggtttctcaaccacctattattcagaaag 26038598  T
Q  118 nnnnnnn-gatctattattgaagttcatctagcnnnnnnnnatnnnnnnnnggggggaaagagcaaattattgttgattaaagtgacactaatgagaaaa 216  Q
            |||||||||||||||||||||||||        ||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26038599 aaaaaaaagatctattattgaagttcatctagcttttttt-ataaaaaaaaagggggaaagagcaaattattgttgattaaagtgacactaatgagaaaa 26038697  T
Q  217 ccgttctcgaggagatttgaacctcatccattgagattgcatggttaaaaaatttactgagctgacaactcatggacatcagttcatctagtta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26038698 ccgttctcgaggagatttgaacctcatccattgagattgcatggttaaaacttttactgagctgacaactcatggacatcagttcatctagtta 26038791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University