View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_19 (Length: 306)
Name: NF11831_low_19
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_19 |
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| [»] scaffold0352 (1 HSPs) |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: scaffold0352 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 16829 - 16629
Alignment:
| Q |
28 |
ccaaacaatcatgaccattagatctctatcattagacacaattatcatatcagccatttgatcatatcttaatgctggcttacacagaacactaccatca |
127 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
16829 |
ccaaacaatcatgaccattagatctctatcattaggcacaattaacatatcagccatttgatcatatcttaatgctggcttacacacatcacaaccatca |
16730 |
T |
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| Q |
128 |
attcaaatttgaattttctctattggaactctaattgttcaccgatgctaaaaatcagtgtgatatttttactattccaatgcacatacattctcatgac |
227 |
Q |
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| T |
16729 |
attcaaatttgaattttccccattggaactctaattgttcaccgatgctaaaaatcagtgtgatatttttactattccaatgcacatacattctcatgac |
16630 |
T |
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| Q |
228 |
t |
228 |
Q |
| |
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| |
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|
| T |
16629 |
t |
16629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 32651279 - 32651082
Alignment:
| Q |
1 |
aaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatctctatcattagacacaattatcatatcagccatttgatcatatcttaat |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||||| |||||||| |
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| T |
32651279 |
aaaccctaattctaagatttttaggcgccaaacaatcatgaccattagatctctatcattaggcgcaattatcatatcagtca-ttgatcacatcttaat |
32651181 |
T |
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| Q |
101 |
gctggcttacacagaacactaccatcaattcaaatttgaattttctctattggaactctaattgttcaccga--tgctaaaaatcagtgtgatattttt |
197 |
Q |
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| T |
32651180 |
gatggcttgcacacatcacaaccatcaattcaaatttgaatttttcccattggaactctaattgttcaccgaaccgctaaaaatcagtgtgatattttt |
32651082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 12506525 - 12506584
Alignment:
| Q |
45 |
ttagatctctatcattagacacaattatcatatcagccatttgatcatatcttaatgctgg |
105 |
Q |
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| T |
12506525 |
ttagatctctatcgttaggcgcaattatcatatcagcca-ttgatcagatcttaatgctgg |
12506584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41810216 - 41810266
Alignment:
| Q |
1 |
aaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatc |
51 |
Q |
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| T |
41810216 |
aaaccctaattttaagatttttaagcgccaatcaatccagaccgttagatc |
41810266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 17726077 - 17726174
Alignment:
| Q |
1 |
aaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatctctatcattagacacaattatcatatcagccatttgatcatatctta |
98 |
Q |
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| T |
17726077 |
aaaccctaattctaagatttttaggcgccaaacaatcatgaccattagatctctatcattagacgcaattatcatatcagccatttgatcatatctta |
17726174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 4289976 - 4290044
Alignment:
| Q |
149 |
attggaactctaattgttcaccgat--gctaaaaatcagtgtgatatttttactattccaatgcacata |
215 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289976 |
attgaaactctaatttttcaccgatccgctaaaaatcagtgtgatatttttactattccaatgcacata |
4290044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 13952 - 13893
Alignment:
| Q |
45 |
ttagatctctatcattagacacaattatcatatcagccatttgatcatatcttaatgctgg |
105 |
Q |
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||||||||||||| |||| | |||||||||||||||||| ||||||| ||||||||||||| |
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| T |
13952 |
ttagatctctatcgttaggcgcaattatcatatcagcca-ttgatcagatcttaatgctgg |
13893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 19766075 - 19766169
Alignment:
| Q |
18 |
tttttaggcgccaaacaatcatgaccattagatctctatcattagacacaattatcatatcagccatttgatcatatcttaatgctggcttacaca |
113 |
Q |
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|||||||||||||||||||| | || || ||||| | |||||||||| ||| |||||||||| ||||||| |||||||||||||||| |||| |
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| T |
19766075 |
tttttaggcgccaaacaatccaggccgttggatctatgtcattagacaagcttaacatatcagcc-cttgatcaaatcttaatgctggcttgcaca |
19766169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52130834 - 52130884
Alignment:
| Q |
1 |
aaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatc |
51 |
Q |
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||||||||||| ||||||||||||||||||| ||||| |||| ||||||| |
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| T |
52130834 |
aaaccctaattctaagatttttaggcgccaatcaatccagaccgttagatc |
52130884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 26044836 - 26044778
Alignment:
| Q |
24 |
ggcgccaaacaatcatgaccattagatctctatcattagacacaattatcatatcagcc |
82 |
Q |
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||||||||||||||||| || ||||||||||||| |||| | ||||| |||||| |||| |
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| T |
26044836 |
ggcgccaaacaatcatggccgttagatctctatctttaggcgcaattttcatataagcc |
26044778 |
T |
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