View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_25 (Length: 247)
Name: NF11831_low_25
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4634810 - 4634602
Alignment:
| Q |
1 |
taagtgatttcagtcctttatctggaaggtgtttactatgagagagagaaatggaaggagaatagaaagaggttcaatttattcacatatttgaaattct |
100 |
Q |
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| T |
4634810 |
taagtgatttcagtcctttatctggaaggtgtttactatgagagagagaaatggaaggagaatagaaagaggttcaattgattcacatatttgaaattct |
4634711 |
T |
|
| Q |
101 |
gcatttaacctatgatatcagagtatgtttaacaaaataataaattacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgcca |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634710 |
gcatttaacctatgatattagagtatgtttaacaaaataataaattacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgcca |
4634611 |
T |
|
| Q |
201 |
tatatattg |
209 |
Q |
| |
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||||||||| |
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| T |
4634610 |
tatatattg |
4634602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 16692655 - 16692571
Alignment:
| Q |
4 |
gtgatttcagtcctttatctggaaggtgtttactatgagagagagaaatggaaggagaatagaaagaggttcaatttattcacat |
88 |
Q |
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|||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
16692655 |
gtgatttcagtcgtttatccagaaggtgttgactatgagagagagaaatggaaggacaatagaaagaggttcaattgattcacat |
16692571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 21838116 - 21838239
Alignment:
| Q |
86 |
catatttgaaattctgcatttaacctatgatatcagagtatgtttaacaaaataataaattacagggaatagtttgtcttggcttggttgattaggatat |
185 |
Q |
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| T |
21838116 |
catatttgaaattctgcatttaacctatgatattagagtatgtttaacaaaataataaattacagggcatagtttgtcttggcttggttgattaggatat |
21838215 |
T |
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| Q |
186 |
gaaacttggttgccatatatattg |
209 |
Q |
| |
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|||||||||||||| ||||||||| |
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| T |
21838216 |
gaaacttggttgccttatatattg |
21838239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 17732872 - 17732998
Alignment:
| Q |
88 |
tatttgaaattctgcatttaacctatgatatcagagtatgtttaac--------aaaataataaattacagggaatagtttgtcttggcttggttgatta |
179 |
Q |
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||||||| ||||||||||||||||||||| | |||| || ||||| |||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
17732872 |
tatttgagattctgcatttaacctatgattttagagcttgcttaaccaaaaaaaaaaaaaaaaaattacagggaatagtttgtcttggcttggttgatta |
17732971 |
T |
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| Q |
180 |
ggatatgaaacttggttgccatatata |
206 |
Q |
| |
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|||||| |||||||| |||| |||||| |
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| T |
17732972 |
ggatataaaacttgggtgccttatata |
17732998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 7762119 - 7762169
Alignment:
| Q |
134 |
aaaataataaattacagggaatagtttgtcttggcttggttgattaggata |
184 |
Q |
| |
|
|||| |||| |||| || ||||||||||||||||||||| ||||||||||| |
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|
| T |
7762119 |
aaaaaaatatattatagagaatagtttgtcttggcttggctgattaggata |
7762169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 22761989 - 22761944
Alignment:
| Q |
139 |
aataaattacagggaatagtttgtcttggcttggttgattaggata |
184 |
Q |
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||||||||| |||||||| ||||||||||||||| || |||||||| |
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| T |
22761989 |
aataaattatagggaatattttgtcttggcttggctgtttaggata |
22761944 |
T |
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