View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_28 (Length: 234)
Name: NF11831_low_28
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2946088 - 2945873
Alignment:
| Q |
1 |
acgaaataacaaataaaaggatatacctatgattctatgaagtaggtacaaagttaatctaaaacattgtactttctaagagataactaactgcattgaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2946088 |
acgaaataacaaataaaaagatatacctatgattctatgaagtaggtacaaagttaatctaaaacattgtactttctaagagataactaactgcattgaa |
2945989 |
T |
|
| Q |
101 |
ttggaactttctctactcagccccaggatcatataccaaaacttgtttgtgttttccataatttgcatgccttatcttatcatgcctcagatctttgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2945988 |
ttggaactttctctactcagccccaggatcatataccaaaacttgtttgtgttttccataatttgcatgccttatcttatcatgcctcagatctttgatc |
2945889 |
T |
|
| Q |
201 |
agtcctgtagaagggt |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
2945888 |
agtcctgtagaagggt |
2945873 |
T |
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