View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11831_low_29 (Length: 228)
Name: NF11831_low_29
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_29 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 30956448 - 30956669
Alignment:
| Q |
7 |
gaaaatactgattttggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30956448 |
gaaaatactgattttggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattct |
30956547 |
T |
|
| Q |
107 |
gcggctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttaccatttattttattccatgattttct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30956548 |
gcggctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttactatttattttattccatgattttct |
30956647 |
T |
|
| Q |
207 |
ttgaagtattcatttttgccac |
228 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30956648 |
ttgaagtattcatttttgccac |
30956669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 30946272 - 30946433
Alignment:
| Q |
67 |
ttagagccaaccactaaaagaagcgccttgagggaattctgcggctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaac |
166 |
Q |
| |
|
||||||||||| || || ||||||| ||||| |||| |||||||||| || ||||| || |||||||| | ||||||| ||| | | |||||||||| |
|
|
| T |
30946272 |
ttagagccaacagctggaataagcgccaagagggcattccgcggctgtttatattttgcggtatttgactttggtcatggcattcgcggcggttccaaac |
30946371 |
T |
|
| Q |
167 |
tgccgtaattgttaccatttattttattccatgattttctttgaagtattcatttttgccac |
228 |
Q |
| |
|
|||| |||||||| |||||||||||||| | | ||||||| |||||||||||||| |||| |
|
|
| T |
30946372 |
tgccataattgttgccatttattttattgaaataatttcttttaagtattcatttttaccac |
30946433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 30946190 - 30946226
Alignment:
| Q |
7 |
gaaaatactgattttggaacgtcatttgcagcgtgtg |
43 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30946190 |
gaaaatactgattttggaacgtcatttgtggcgtgtg |
30946226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University