View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_30 (Length: 216)
Name: NF11831_low_30
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 30292380 - 30292498
Alignment:
| Q |
61 |
agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaagttttgtgc |
160 |
Q |
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| T |
30292380 |
agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccactttcctactatgaataaattaatcaagaacaagttttgtgc |
30292479 |
T |
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| Q |
161 |
ctcctctgctctgctacta |
179 |
Q |
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| T |
30292480 |
cacctcctctctgctacta |
30292498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 30315854 - 30316004
Alignment:
| Q |
18 |
aatgagtgatcaaatattaagaatgtatgctgtaaggtcctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttcc |
117 |
Q |
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| T |
30315854 |
aatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactagagttcc |
30315953 |
T |
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| Q |
118 |
acc-tttctactatgaataaattaatcaagaacaagttttgtgcctcctct |
167 |
Q |
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| T |
30315954 |
accttttgtactatgaataaattaatcaagaataagttttgtgccacctct |
30316004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 30287320 - 30287474
Alignment:
| Q |
18 |
aatgagtgatcaaatattaagaatgtatgctgtaaggtcctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttcc |
117 |
Q |
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| T |
30287320 |
aatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggcattatcttgtaac------tagagttcc |
30287413 |
T |
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| Q |
118 |
acctttctactatgaataaattaatcaagaacaagttttgtgcctcctctgctctgctact |
178 |
Q |
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| T |
30287414 |
tcctttctactatgaataaattaatcaagaataagttttgtgcctcctcctctctgctact |
30287474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 30304988 - 30305137
Alignment:
| Q |
18 |
aatgagtgatcaaatattaagaatgtatgctgtaaggtcctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttcc |
117 |
Q |
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||||||||||||||||||| | | ||||| | || || |||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30304988 |
aatgagtgatcaaatattatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggcattatcttgtaactataactagagttcc |
30305087 |
T |
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| Q |
118 |
acctttctactatgaataaattaatcaagaacaagttttgtgcctcctct |
167 |
Q |
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| T |
30305088 |
acctttctactatgaataactgaatcaagaataagttttgagccacctct |
30305137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 30300196 - 30300339
Alignment:
| Q |
18 |
aatgagtgatcaaatattaagaatgtatgctgtaaggtcctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttcc |
117 |
Q |
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||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||| || |||||| ||| ||||||| |
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| T |
30300196 |
aatgagtgatcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggcaatatcttgtatcta------gagttcc |
30300289 |
T |
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| Q |
118 |
acctttctactatgaataaattaatcaagaacaagttttgtgcctcctct |
167 |
Q |
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||||||| || |||||||||||||||||||| |||||||||||| ||||| |
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| T |
30300290 |
acctttccaccatgaataaattaatcaagaataagttttgtgccacctct |
30300339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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