View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11831_low_31 (Length: 212)

Name: NF11831_low_31
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11831_low_31
NF11831_low_31
[»] chr3 (8 HSPs)
chr3 (16-188)||(1941292-1941464)
chr3 (58-155)||(7432842-7432939)
chr3 (48-158)||(955541-955651)
chr3 (36-158)||(1931890-1932012)
chr3 (58-158)||(1891807-1891907)
chr3 (58-158)||(1937723-1937823)
chr3 (48-158)||(967863-967973)
chr3 (90-155)||(7398933-7398998)
[»] chr8 (1 HSPs)
chr8 (46-150)||(31145151-31145255)
[»] chr5 (3 HSPs)
chr5 (47-158)||(1428501-1428612)
chr5 (58-158)||(23754794-23754894)
chr5 (58-158)||(23820249-23820349)
[»] chr6 (1 HSPs)
chr6 (54-98)||(4183767-4183811)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 1941292 - 1941464
Alignment:
Q  16 gagaggcggagatgttgcccagcgaatattggatcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtc 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1941292 gagaggcggaggtgttgcccagcgaatattggatcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtc 1941391  T
Q  116 tacagaggatctctgagatgagatccaaaggaagagtgggaagctgcagtctggtgtaattcgacaatgataa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1941392 tacagaggatctctgagatgagatccaaaggaagagtgggaagctgcggtctggtgtaattcgacaatgataa 1941464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 7432842 - 7432939
Alignment:
Q  58 agagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaaggaagagtggg 155  Q
    |||||||||||||||||||| | ||| || |||||||||||||||||||| || || ||| |||| || ||||  |||||||| ||||||||||||||    
T  7432842 agagaattccacgacttgcagatgcatcgcaattgaaggagaagcttcaccggaagcctagagagtatttctgtaatgagatcgaaaggaagagtggg 7432939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 955651 - 955541
Alignment:
Q  48 atcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaagga 147  Q
    ||||| ||||||||||||||| ||||| |||||||| || | ||||||||| ||||| ||  | || ||||||||||| ||||| | |||||| ||||||    
T  955651 atcagagataagagaattccaagacttacaaacgcatcgaagttgaaggaggagctttacctgtagcctacagaggatttctgaaacgagatcaaaagga 955552  T
Q  148 agagtgggaag 158  Q
    ||| |||||||    
T  955551 agaatgggaag 955541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 1931890 - 1932012
Alignment:
Q  36 agcgaatattggatcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatg 135  Q
    ||||||| | || |||| ||| ||||||||| | |||||||||||||||||||||   |  || ||||||||||  || ||||||||||| ||||  |||    
T  1931890 agcgaatttggggtcagagattagagaattctatgacttgcaaacgcaccggaatctcacaaggagcttcacggatagcctacagaggatttctggaatg 1931989  T
Q  136 agatccaaaggaagagtgggaag 158  Q
    ||||| |||||||||||||||||    
T  1931990 agatcgaaaggaagagtgggaag 1932012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 1891807 - 1891907
Alignment:
Q  58 agagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaaggaagagtgggaa 157  Q
    ||||||||||| |||||||| ||  | |||| ||||||||| |||||||| || ||||||   || || ||||| |||||||||||||||||||||||||    
T  1891807 agagaattccatgacttgcagacagatcggagttgaaggaggagcttcactggaagtctagttagaatttctgaaatgagatccaaaggaagagtgggaa 1891906  T
Q  158 g 158  Q
    |    
T  1891907 g 1891907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 1937723 - 1937823
Alignment:
Q  58 agagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaaggaagagtgggaa 157  Q
    ||||||||| | |||||||||||||||||||||   ||||| || ||||| |  || ||| ||||||| ||||  |||||||| ||||||||||||||||    
T  1937723 agagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaagagtgggaa 1937822  T
Q  158 g 158  Q
    |    
T  1937823 g 1937823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 967973 - 967863
Alignment:
Q  48 atcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaagga 147  Q
    ||||||||| |||||||||||||||||||| || || |||||||| | ||| ||||| || |  || ||||| || || ||||  |||||||| ||||||    
T  967973 atcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaagga 967874  T
Q  148 agagtgggaag 158  Q
    ||||| |||||    
T  967873 agagtcggaag 967863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 7398933 - 7398998
Alignment:
Q  90 ttgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaaggaagagtggg 155  Q
    |||||||||||||||||| ||||| ||||| || |||||||| | |||||| || |||||||||||    
T  7398933 ttgaaggagaagcttcactgggagcctacacagaatctctgacaggagatctaatggaagagtggg 7398998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 31145151 - 31145255
Alignment:
Q  46 ggatcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaag 145  Q
    |||||||  |||||||||||||| ||||||||||| ||| ||||||| | ||| |  ||||| ||||||||||||||||| ||||  |||||||| ||||    
T  31145151 ggatcagatataagagaattccatgacttgcaaacacactggaattgtatgaggaatttcacagggagtctacagaggatatctgtaatgagatcgaaag 31145250  T
Q  146 gaaga 150  Q
    |||||    
T  31145251 gaaga 31145255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 1428501 - 1428612
Alignment:
Q  47 gatcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaagg 146  Q
    |||||||||| |||||||| || | |||||||| ||| |||| ||||||||| || |||||||| || |||  |||||| | ||| ||||  || |||||    
T  1428501 gatcagtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcacgggtagcctatggaggatttgtgaaatgatgtcgaaagg 1428600  T
Q  147 aagagtgggaag 158  Q
    ||||||||||||    
T  1428601 aagagtgggaag 1428612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 23754794 - 23754894
Alignment:
Q  58 agagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaaggaagagtgggaa 157  Q
    |||||||||||| ||||||| || || || ||||| | |||| | ||||||||||| |||  ||| || ||||  |||||||| ||||||| ||||||||    
T  23754794 agagaattccaccacttgcacacacatcgaaattgcatgagaggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaatagtgggaa 23754893  T
Q  158 g 158  Q
    |    
T  23754894 g 23754894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 23820249 - 23820349
Alignment:
Q  58 agagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaaggaagagtgggaa 157  Q
    |||||||||||| ||||||| || || || ||||| | |||| | ||||||||||| |||  ||| || ||||  |||||||| ||||||| ||||||||    
T  23820249 agagaattccaccacttgcacacacatcgaaattgcatgagaggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaatagtgggaa 23820348  T
Q  158 g 158  Q
    |    
T  23820349 g 23820349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 4183767 - 4183811
Alignment:
Q  54 gataagagaattccacgacttgcaaacgcaccggaattgaaggag 98  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||    
T  4183767 gataagagaattccaggacttgcaaacgcaacggagttgaaggag 4183811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University