View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11831_low_4 (Length: 626)
Name: NF11831_low_4
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11831_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 497
Target Start/End: Complemental strand, 13409671 - 13409183
Alignment:
| Q |
11 |
cacagacacggacacaagagataataatgtatacgaacacgtcaatttcgataataatttgaaaaaatgaattaatagaacttagttacacgtgttggtg |
110 |
Q |
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| T |
13409671 |
cacagacacggacacaagagataataata-atagtaacacatcaatatcgataataatttgaaaaaataaattaatagaacttagttacacgtgttggtg |
13409573 |
T |
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| Q |
111 |
ttgtgactcagaggcaaacacgagacatacttttgattagaagtgtcggtgctaacgacggtctaatggttatgcatggaggactatgatcttgcaacat |
210 |
Q |
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| T |
13409572 |
ttg--actcagaggcaaacacaagacatacttttgattagaagtgtcggtgcttacgacggtctaatggttatgcatggaggactatgatcttgcaacat |
13409475 |
T |
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| Q |
211 |
tat---tgtattatgagtagcttaataaaaaagac--aagtaaaattcaaa------atgattattaaattgtatgttgagtttaatatagaacaattga |
299 |
Q |
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| T |
13409474 |
tattcatgtattatgagtagcttaataaaaaagacaaaagtaaaattcaaaataattattattattaaattgtatgttgagtttaatatagaacaattga |
13409375 |
T |
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| Q |
300 |
tttagtttgttttgatttagttagtatggaaagataaggtattgaattatgacaaaatgtttagattgaagnnnnnnnntgtgaaaaatgaagtatgttt |
399 |
Q |
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| T |
13409374 |
tttagtttgttttgatttagttagtatggaaagataaggtattgaattatgacaaaatgtttagattgaagaaaaaaaatgtgaaaaatgaagtatgttt |
13409275 |
T |
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| Q |
400 |
tatgcatgcagtataatatggaaatgatatgcacctgcacaagataagaggtgaatagtgaatcgttaatacagattcattgtgcatggttttttaac |
497 |
Q |
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| T |
13409274 |
tatgcatgcagtataacattgaaatgatatgcacctgcacaagataagaggtgaatagtgaatcctta------attcattgtgcatggttttttaac |
13409183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 505 - 580
Target Start/End: Complemental strand, 13409151 - 13409076
Alignment:
| Q |
505 |
ttagctagataagtttaaaataatgctaataatggtgttcaccatttttggctttagataaaactaagaatcaaac |
580 |
Q |
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| T |
13409151 |
ttagctagataagtttaaaataatgctaataatggtgttcaccatttttggctttagataaaactaagaatcaaac |
13409076 |
T |
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