View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11831_low_5 (Length: 573)

Name: NF11831_low_5
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11831_low_5
NF11831_low_5
[»] chr1 (4 HSPs)
chr1 (490-573)||(49713217-49713300)
chr1 (490-573)||(49655695-49655778)
chr1 (284-408)||(18655503-18655627)
chr1 (343-405)||(9850028-9850090)
[»] chr6 (9 HSPs)
chr6 (259-408)||(13562201-13562356)
chr6 (259-408)||(13561334-13561489)
chr6 (280-407)||(10673666-10673793)
chr6 (296-406)||(25439055-25439165)
chr6 (130-209)||(9928083-9928172)
chr6 (334-408)||(24318050-24318124)
chr6 (164-199)||(27439180-27439215)
chr6 (343-408)||(27108170-27108234)
chr6 (343-408)||(27149967-27150031)
[»] chr5 (12 HSPs)
chr5 (280-408)||(38603682-38603810)
chr5 (280-408)||(42962079-42962207)
chr5 (338-408)||(39050744-39050814)
chr5 (343-408)||(8358224-8358289)
chr5 (296-408)||(42963163-42963275)
chr5 (259-408)||(39051578-39051732)
chr5 (338-408)||(5163716-5163786)
chr5 (260-408)||(38602718-38602873)
chr5 (164-205)||(38473221-38473262)
chr5 (343-408)||(8359409-8359474)
chr5 (325-408)||(301416-301499)
chr5 (312-386)||(4904280-4904355)
[»] chr4 (10 HSPs)
chr4 (280-408)||(31204610-31204738)
chr4 (281-408)||(21569306-21569433)
chr4 (280-408)||(21570355-21570483)
chr4 (280-408)||(31205641-31205769)
chr4 (343-408)||(54823253-54823318)
chr4 (334-400)||(44219014-44219080)
chr4 (343-405)||(54822437-54822499)
chr4 (347-408)||(44217629-44217690)
chr4 (312-408)||(47573608-47573704)
chr4 (337-408)||(42698650-42698721)
[»] chr2 (7 HSPs)
chr2 (259-408)||(38593087-38593241)
chr2 (259-408)||(38596683-38596837)
chr2 (281-408)||(10330762-10330888)
chr2 (281-408)||(371900-372027)
chr2 (259-408)||(38593956-38594107)
chr2 (259-408)||(38597552-38597703)
chr2 (280-400)||(370831-370951)
[»] chr3 (10 HSPs)
chr3 (280-408)||(50002469-50002597)
chr3 (280-408)||(50003155-50003283)
chr3 (280-408)||(21248189-21248317)
chr3 (280-407)||(27225490-27225617)
chr3 (281-402)||(5409400-5409521)
chr3 (287-407)||(27226478-27226598)
chr3 (343-408)||(55387641-55387706)
chr3 (280-386)||(45730714-45730820)
chr3 (281-406)||(5384479-5384604)
chr3 (338-408)||(21247292-21247362)
[»] chr7 (13 HSPs)
chr7 (281-408)||(23153563-23153690)
chr7 (280-408)||(35044675-35044804)
chr7 (280-408)||(36584837-36584965)
chr7 (280-400)||(47536782-47536902)
chr7 (281-408)||(47535715-47535842)
chr7 (294-408)||(43704398-43704512)
chr7 (292-408)||(35045838-35045954)
chr7 (280-408)||(40321125-40321253)
chr7 (280-396)||(42520289-42520405)
chr7 (280-408)||(42521190-42521318)
chr7 (338-407)||(40322225-40322295)
chr7 (280-408)||(43703109-43703237)
chr7 (310-386)||(40881168-40881245)
[»] chr8 (8 HSPs)
chr8 (280-408)||(41767096-41767224)
chr8 (284-408)||(44770550-44770674)
chr8 (337-408)||(43415957-43416028)
chr8 (280-394)||(44769749-44769862)
chr8 (280-408)||(12820031-12820158)
chr8 (347-408)||(43414437-43414498)
chr8 (333-408)||(23768471-23768545)
chr8 (312-408)||(9189450-9189546)
[»] scaffold0013 (2 HSPs)
scaffold0013 (280-409)||(32157-32285)
scaffold0013 (280-409)||(27886-28016)
[»] scaffold0041 (1 HSPs)
scaffold0041 (310-386)||(85038-85115)
[»] scaffold0003 (1 HSPs)
scaffold0003 (164-199)||(48147-48182)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 490 - 573
Target Start/End: Complemental strand, 49713300 - 49713217
Alignment:
Q  490 caaacctgtatcacactttgcaggatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacacct 573  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49713300 caaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacacct 49713217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 490 - 573
Target Start/End: Complemental strand, 49655778 - 49655695
Alignment:
Q  490 caaacctgtatcacactttgcaggatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacacct 573  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  49655778 caaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacttgaaattgtatacatctttatcaaagccacacct 49655695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 408
Target Start/End: Complemental strand, 18655627 - 18655503
Alignment:
Q  284 atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaag 382  Q
    ||||||| |||||||| ||||||||||||| |||||||||| ||||||   ||   ||| |||||||||||| | |||||||||||| ||||||| ||||    
T  18655627 atacactattagatctaatggacctccttt-atccaacggtcttctttttaaggattttaaaattaataaaaaaggactaaattgatcattaaaacaaag 18655529  T
Q  383 ataaaggaccattttaaaacgtttaa 408  Q
    |||||  | |||||| ||||||||||    
T  18655528 ataaataaacattttgaaacgtttaa 18655503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 9850090 - 9850028
Alignment:
Q  343 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtt 405  Q
    |||||||||||||| ||  |||||||||| ||||| ||| ||||||||||||||| |||||||    
T  9850090 aaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgtt 9850028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 259 - 408
Target Start/End: Original strand, 13562201 - 13562356
Alignment:
Q  259 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 351  Q
    |||||||||||||||||||||||||      ||||||| |||||||||||||| ||||||| ||||||| || ||||||  |||  |||| |||||||||    
T  13562201 tgaagaaagtgatataaattaggtgttggtgatacactgttagatctgatggatctccttt-atccaacagtcttcttttttaggagtttaaaattaata 13562299  T
Q  352 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| ||| ||||| |||| ||||| ||||||||||||||||||| ||||||||||    
T  13562300 aaataggaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaa 13562356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 259 - 408
Target Start/End: Complemental strand, 13561489 - 13561334
Alignment:
Q  259 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 351  Q
    |||||||||||||||||||||||||      ||||||| ||||||||||||||||| |||| |||||||| | ||||||   ||  |||| |||||||||    
T  13561489 tgaagaaagtgatataaattaggtgttggtgatacactattagatctgatggaccttcttt-atccaacgatcttctttttgaggagtttaaaattaata 13561391  T
Q  352 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| ||| |||||||||| || || ||||||||| ||||||||| ||||||||||    
T  13561390 aaataggaccaaattgatgactataacaaagataaaagaccattttgaaacgtttaa 13561334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 280 - 407
Target Start/End: Complemental strand, 10673793 - 10673666
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    |||||||||| ||||||| ||||||||||||||| || ||||||| ||||||   | |||||| |||||||||||||| ||||||||||||||  ||||     
T  10673793 ggtgatacacctttagatatgatggacctccttt-attcaacggtcttctttttgaaaggtttaaaattaataaaataggactaaattgatgacgaaaac 10673695  T
Q  379 aaagataaaggaccattttaaaacgttta 407  Q
    ||| |||||||||||  || |||||||||    
T  10673694 aaacataaaggaccaaattgaaacgttta 10673666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 25439055 - 25439165
Alignment:
Q  296 atctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccat 394  Q
    |||||||| ||||||||| |||||||||| ||||||   |||||||| |||||||||||||  ||| |||||||| || |||| ||||||||| |||||     
T  25439055 atctgatgaacctccttt-atccaacggtcttctttttaagaggtttaaaattaataaaattggaccaaattgataatgaaaacaaagataaaagaccaa 25439153  T
Q  395 tttaaaacgttt 406  Q
     || ||||||||    
T  25439154 attgaaacgttt 25439165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 9928083 - 9928172
Alignment:
Q  130 atgaagaaattggtgatcatcatcatcatgttgatgtt----------gatgatttctggatttaagaaattggaggtgtagtgatgaga 209  Q
    |||||||||||| |||| ||||||||||||||||||||          ||||||||||| |||| |||||||||||||||||||| ||||    
T  9928083 atgaagaaattgatgatgatcatcatcatgttgatgttgattgttgttgatgatttctgaattttagaaattggaggtgtagtgacgaga 9928172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 24318050 - 24318124
Alignment:
Q  334 agaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||||||||||||||  ||  ||||||||||  |||| |||||||||||||||  |||||| ||||||    
T  24318050 agaggtttgaaattaataaaatgggatcaaattgatgacgaaaacaaagataaaggaccaaattaaaaagtttaa 24318124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 27439215 - 27439180
Alignment:
Q  164 tgttgatgatttctggatttaagaaattggaggtgt 199  Q
    |||||| |||||||||||||||||||||||||||||    
T  27439215 tgttgacgatttctggatttaagaaattggaggtgt 27439180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 27108170 - 27108234
Alignment:
Q  343 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||||||||| |||||||| |||||| |||| |||||| |||| |||  |||||||||||||    
T  27108170 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtccaaattaaaacgtttaa 27108234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 27149967 - 27150031
Alignment:
Q  343 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||||||||| |||||||| |||||| |||| |||||| |||| |||  |||||||||||||    
T  27149967 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtccaaattaaaacgtttaa 27150031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 38603682 - 38603810
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||| ||||||  |||  |||| |||||||||||||| ||| |||||||||| |||||     
T  38603682 ggtgatacactattagatctgatggaccttcttt-atccaacggtcttcttttttaggagtttaaaattaataaaataggaccaaattgatgactaaaac 38603780  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||||||||||| ||| ||||||    
T  38603781 aaagataaaggaccattttgaaaagtttaa 38603810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 408
Target Start/End: Complemental strand, 42962207 - 42962079
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  |||||||| || |||||||||| |||||||||| ||||||   |||||||| |||||||||||||| ||| ||||||||||| ||||     
T  42962207 ggtgatacaccattagatcttatagacctccttt-atccaacggtcttctttttgagaggtttaaaattaataaaataggaccaaattgatgatgaaaac 42962109  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||||||| |||||| |||||||    
T  42962108 aaagataaaggaccaatttaaagcgtttaa 42962079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 39050814 - 39050744
Alignment:
Q  338 gtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||| |||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||| ||||||||||    
T  39050814 gtttaaaattaataaaatatgaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaa 39050744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 8358289 - 8358224
Alignment:
Q  343 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||||||||||||| ||| |||||| ||||| ||||||||| ||||||||||||||||||||    
T  8358289 aaattaataaaatatgaccaaaatgatgactaaaacaaagataaaagaccattttaaaacgtttaa 8358224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 42963163 - 42963275
Alignment:
Q  296 atctgatggacctccttttatccaacggtt-tctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccat 394  Q
    |||||||||||||||||| ||||||||||  |||||   |||||||| |||||||||||||| || |||||||||||| |||| ||||||||| |||||     
T  42963163 atctgatggacctccttt-atccaacggtcatctttttgagaggtttaaaattaataaaataggattaaattgatgatgaaaacaaagataaatgaccaa 42963261  T
Q  395 tttaaaacgtttaa 408  Q
     || ||||||||||    
T  42963262 attgaaacgtttaa 42963275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 408
Target Start/End: Original strand, 39051578 - 39051732
Alignment:
Q  259 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggtttctttcgtagaggtttgaaattaataa 352  Q
    |||||||| ||||||||||||||||      ||||||| ||||||||||||||||| |||| ||| | |||| | |||   ||  |||| ||||||||||    
T  39051578 tgaagaaaatgatataaattaggtgttgatgatacactattagatctgatggaccttcttt-atctagcggtctttttttgaggagtttaaaattaataa 39051676  T
Q  353 aatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||| ||  |||||||||| ||||| ||||||||||||||||||| |||| |||||    
T  39051677 aataggatcaaattgatgactaaaacaaagataaaggaccattttgaaacatttaa 39051732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 5163786 - 5163716
Alignment:
Q  338 gtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||||||| |||||| |||| |||||    
T  5163786 gtttaaaattaataaaatatgaccaaattgataattaaaacaaagataaaggatcattttgaaacatttaa 5163716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 408
Target Start/End: Complemental strand, 38602873 - 38602718
Alignment:
Q  260 gaagaaagtgatataaatta------ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataa 352  Q
    ||||||||||||||||||||      ||||||||| | |||||||||||| |  || ||||||||||| || ||||||   ||  |||| ||||||||||    
T  38602873 gaagaaagtgatataaattaagtgttggtgatacattgttagatctgatgaatatc-ttttatccaactgtcttctttttgaggagtttaaaattaataa 38602775  T
Q  353 aatatgactaaattgatgattaaaagaaa-gataaaggaccattttaaaacgtttaa 408  Q
    |||||||| ||||| |||| ||||| ||| |||| ||||||||||||||||||||||    
T  38602774 aatatgaccaaatttatgactaaaataaaagatagaggaccattttaaaacgtttaa 38602718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 38473221 - 38473262
Alignment:
Q  164 tgttgatgatttctggatttaagaaattggaggtgtagtgat 205  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  38473221 tgttgatgatttctggatttaaaaaattggaggtgtagtgat 38473262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 8359409 - 8359474
Alignment:
Q  343 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| |||||||| ||| ||| |||||| ||||| ||||||||| |||||||||||||| |||||    
T  8359409 aaatttataaaataggaccaaaatgatgactaaaacaaagataaaagaccattttaaaacttttaa 8359474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 408
Target Start/End: Complemental strand, 301499 - 301416
Alignment:
Q  325 ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||  |||||||| |||||||||||||| ||  |||||||||  ||||| ||||| ||| || ||||||| |||||||||    
T  301499 ttctttctaagaggtttaaaattaataaaataggatcaaattgatggctaaaacaaagagaaaagatcattttataacgtttaa 301416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 4904355 - 4904280
Alignment:
Q  312 tttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataa 386  Q
    ||||||||||||| ||||||  ||||  ||| |||||||||||||||||| |||| |||||| |||| ||||||||    
T  4904355 tttatccaacggtcttcttttttagaaatttaaaattaataaaatatgaccaaatcgatgatgaaaacaaagataa 4904280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 280 - 408
Target Start/End: Complemental strand, 31204738 - 31204610
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||| ||||||   ||  |||| |||||||||||||| ||| ||||||||||||||||     
T  31204738 ggtgatacactgttagatctgatggacatccttt-atccaacggtcttctttttaaggagtttaaaattaataaaataggaccaaattgatgattaaaat 31204640  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||| ||||||||| ||||||||||    
T  31204639 aaagataaatgaccattttgaaacgtttaa 31204610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 281 - 408
Target Start/End: Complemental strand, 21569433 - 21569306
Alignment:
Q  281 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 379  Q
    |||||||||| |||||||||||||||||||||| |||||||||| ||||||   |||||||| ||||||||||||||||| ||||| |||||| |||| |    
T  21569433 gtgatacactgttagatctgatggacctccttt-atccaacggtcttctttttgagaggtttaaaattaataaaatatgattaaatagatgatgaaaaca 21569335  T
Q  380 aagataaaggaccattttaaaacgtttaa 408  Q
    |||||||| |||||  || ||||||||||    
T  21569334 aagataaatgaccaaattgaaacgtttaa 21569306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 21570355 - 21570483
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  ||||||||||| |||||||||| |||||||||| ||||||   |||||||| |||||||||||||| ||  ||||||||||| ||||     
T  21570355 ggtgatacacgattagatctgatagacctccttt-atccaacggtcttctttttgagaggtttaaaattaataaaataggatcaaattgatgatgaaaac 21570453  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||| |||||  || ||||||||||    
T  21570454 aaagataaatgaccaaattgaaacgtttaa 21570483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 31205641 - 31205769
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  |||||||||||||| ||||||| ||||||  || ||||||   ||  |||| |||||||||||||||||| ||||| || |||||||     
T  31205641 ggtgatacaccgttagatctgatggatctccttt-atccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaac 31205739  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||||||||||| ||||||||||    
T  31205740 aaagataaaggaccattttgaaacgtttaa 31205769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 54823253 - 54823318
Alignment:
Q  343 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  54823253 aaattaataaaatatgatcaaattgatgactaaaacaaagataaaggaccattttaaaacgtttaa 54823318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 44219014 - 44219080
Alignment:
Q  334 agaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaa 400  Q
    |||||||| |||| ||||||||| ||| ||||||||||| |||| ||||||||||||||| ||||||    
T  44219014 agaggtttaaaatcaataaaataggaccaaattgatgataaaaacaaagataaaggaccaatttaaa 44219080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 54822499 - 54822437
Alignment:
Q  343 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtt 405  Q
    |||||||||||||| ||  |||||||||| ||||| ||| ||||||||||||||| |||||||    
T  54822499 aaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgtt 54822437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 44217690 - 44217629
Alignment:
Q  347 taataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||||| ||| ||||||||||| |||| ||||||||| |||||  |||||||||||||    
T  44217690 taataaaataggaccaaattgatgatgaaaacaaagataaaagaccaaattaaaacgtttaa 44217629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 408
Target Start/End: Original strand, 47573608 - 47573704
Alignment:
Q  312 tttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||||| ||||||   |||| ||| |||||||||||||||||| |||| |||||  |||| |||||| ||||||||  |||||||||||||    
T  47573608 tttatccaacggtcttctttttcagagatttaaaattaataaaatatgaccaaatcgatgacaaaaacaaagat-aaggaccaaattaaaacgtttaa 47573704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 42698650 - 42698721
Alignment:
Q  337 ggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| |||| ||||||||  ||||||||||||||| |||| ||||||||| |||||  || ||||||||||    
T  42698650 ggtttaaaataaataaaatgggactaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaa 42698721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 259 - 408
Target Start/End: Complemental strand, 38593241 - 38593087
Alignment:
Q  259 tgaagaaagtgatataaatta------ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 351  Q
    |||||||||||||||||||||      ||||||||||| |||||||||||||| |||  ||||||||||||| ||||||   ||  |||| |||||||||    
T  38593241 tgaagaaagtgatataaattaagtgttggtgatacactattagatctgatggatctc--tttatccaacggtcttctttttgaggagtttaaaattaata 38593144  T
Q  352 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| ||| |||||||||| ||||| ||||| ||||||||||||| ||||||||||    
T  38593143 aaataggaccaaattgatgactaaaacaaagacaaaggaccattttgaaacgtttaa 38593087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 259 - 408
Target Start/End: Complemental strand, 38596837 - 38596683
Alignment:
Q  259 tgaagaaagtgatataaatta------ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 351  Q
    |||||||||||||||||||||      ||||||||||| |||||||||||||| |||  ||||||||||||| ||||||   ||  |||| |||||||||    
T  38596837 tgaagaaagtgatataaattaagtgttggtgatacactattagatctgatggatctc--tttatccaacggtcttctttttgaggagtttaaaattaata 38596740  T
Q  352 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| ||| |||||||||| ||||| ||||| ||||||||||||| ||||||||||    
T  38596739 aaataggaccaaattgatgactaaaacaaagacaaaggaccattttgaaacgtttaa 38596683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 408
Target Start/End: Complemental strand, 10330888 - 10330762
Alignment:
Q  281 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 379  Q
    |||||||||| ||||||||||| ||||||  |||||||||  || ||||||   || ||||| |||||||||||||| ||| ||||| |||  ||||| |    
T  10330888 gtgatacactgttagatctgatagacctc--tttatccaatagtcttctttttaaggggtttaaaattaataaaataggaccaaattaatggctaaaaca 10330791  T
Q  380 aagataaaggaccattttaaaacgtttaa 408  Q
    |||||||| ||||||||| ||||||||||    
T  10330790 aagataaatgaccattttgaaacgtttaa 10330762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 281 - 408
Target Start/End: Original strand, 371900 - 372027
Alignment:
Q  281 gtgatacacttttagatctgatggacctccttttatccaacggtt-tctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 379  Q
    |||||||||  |||||||||||| ||||||||| ||||||| ||  |||||   |||||||| |||||||||||||| ||  ||||||||||| |||| |    
T  371900 gtgatacaccgttagatctgatgaacctccttt-atccaacagtcatctttttgagaggtttaaaattaataaaataggatcaaattgatgatgaaaaca 371998  T
Q  380 aagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||| ||  || ||||||||||    
T  371999 aagataaaggatcaaattgaaacgtttaa 372027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 259 - 408
Target Start/End: Original strand, 38593956 - 38594107
Alignment:
Q  259 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 351  Q
    |||||||||||||||||||||||||      ||||||    |||||||||||||||||||| |||||||  | ||||||   | | |||| |||||||||    
T  38593956 tgaagaaagtgatataaattaggtgttggtgatacac----agatctgatggacctccttt-atccaacaatcttctttttgataagtttaaaattaata 38594050  T
Q  352 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| ||| ||||| |||  ||||| ||||||||| ||||||||||||||||||||    
T  38594051 aaataggaccaaatttatgtctaaaataaagataaatgaccattttaaaacgtttaa 38594107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 259 - 408
Target Start/End: Original strand, 38597552 - 38597703
Alignment:
Q  259 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 351  Q
    |||||||||||||||||||||||||      ||||||    |||||||||||||||||||| |||||||  | ||||||   | | |||| |||||||||    
T  38597552 tgaagaaagtgatataaattaggtgttggtgatacac----agatctgatggacctccttt-atccaacaatcttctttttgataagtttaaaattaata 38597646  T
Q  352 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| ||| ||||| |||  ||||| ||||||||| ||||||||||||||||||||    
T  38597647 aaataggaccaaatttatgtctaaaataaagataaatgaccattttaaaacgtttaa 38597703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 400
Target Start/End: Complemental strand, 370951 - 370831
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  |||||| |||| |||||| ||| |||||||||| || |||  ||||||||| |||| ||||||||| ||  ||||||||||| ||||     
T  370951 ggtgatacaccattagatttgatagacctcattt-atccaacggtcttattttttagaggtttaaaatcaataaaataggatcaaattgatgataaaaac 370853  T
Q  379 aaagataaaggaccattttaaa 400  Q
    ||||||||| ||||| ||||||    
T  370852 aaagataaatgaccaatttaaa 370831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 408
Target Start/End: Complemental strand, 50002597 - 50002469
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  |||||||||||||| ||||||| |||||||| | |||||| | ||  |||| |||||||||||||| ||||||||||||||||||||     
T  50002597 ggtgatacaccgttagatctgatggatctccttt-atccaacgatcttcttttgaaggagtttaaaattaataaaataggactaaattgatgattaaaac 50002499  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    ||| ||||||||||||||  ||||||||||    
T  50002498 aaacataaaggaccatttcgaaacgtttaa 50002469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 50003155 - 50003283
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  ||||||||||| |||||||||| |||||||||| || |||   ||  |||| |||||||||||||| ||| ||||||||||||||||     
T  50003155 ggtgatacaccgttagatctgattgacctccttt-atccaacggtcttatttttaaggagtttaaaattaataaaataggaccaaattgatgattaaaac 50003253  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    ||| ||||||||||||||| ||||||||||    
T  50003254 aaacataaaggaccattttgaaacgtttaa 50003283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 21248189 - 21248317
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  ||||||| |||||||||||||  ||||||| || ||||||   |||||||| |||||||||||||| ||| ||| | |||| |||||     
T  21248189 ggtgatacaccgttagatccgatggacctcctta-atccaacagtcttctttttaagaggtttaaaattaataaaataggaccaaaataatgactaaaac 21248287  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||| |||||||||| ||||||||||    
T  21248288 aaagataagggaccattttgaaacgtttaa 21248317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 407
Target Start/End: Complemental strand, 27225617 - 27225490
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    |||||||||| |||||||||||||||| | |||| |||||||||| ||||||   | |||||| |||||||||||||| ||||||||||||||  ||||     
T  27225617 ggtgatacacctttagatctgatggactttcttt-atccaacggtcttctttttgaaaggtttaaaattaataaaataggactaaattgatgacgaaaac 27225519  T
Q  379 aaagataaaggaccattttaaaacgttta 407  Q
    ||| |||||| ||||  || |||||||||    
T  27225518 aaacataaagaaccaaattgaaacgttta 27225490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 5409521 - 5409400
Alignment:
Q  281 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 379  Q
    |||||||||  ||| |||||||| ||||||||| |||||||||| ||||||   |||||||| |||||||||||||  ||  ||||||||||| |||| |    
T  5409521 gtgatacaccgttaaatctgatgaacctccttt-atccaacggtcttctttttaagaggtttaaaattaataaaattggatcaaattgatgatgaaaaca 5409423  T
Q  380 aagataaaggaccattttaaaac 402  Q
    ||||||||||||||  |||||||    
T  5409422 aagataaaggaccaaattaaaac 5409400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 407
Target Start/End: Original strand, 27226478 - 27226598
Alignment:
Q  287 cacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagata 385  Q
    |||| |||||||| ||||||||||||| |||||||| | ||||||   || ||||| |||||||||||||| ||| ||||||||||| |||| ||| |||    
T  27226478 cactgttagatcttatggacctccttt-atccaacgatcttctttttgaggggtttaaaattaataaaataggaccaaattgatgatgaaaacaaacata 27226576  T
Q  386 aaggaccattttaaaacgttta 407  Q
    ||||||||  || |||||||||    
T  27226577 aaggaccaaattgaaacgttta 27226598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 55387641 - 55387706
Alignment:
Q  343 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||| ||||||||||||| |||||||||||||||| ||||||||| || ||| |||||||||||||    
T  55387641 aaatcaataaaatatgaccaaattgatgattaaaacaaagataaaagatcatcttaaaacgtttaa 55387706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 386
Target Start/End: Complemental strand, 45730820 - 45730714
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  |||||| ||||| || |||||| |||||||||| ||||||  ||  | ||| |||||||||||||| |||||||| |||||| ||||     
T  45730820 ggtgatacacggttagatatgatgaacttccttt-atccaacggtcttcttttttatggatttcaaattaataaaataggactaaatcgatgatgaaaac 45730722  T
Q  379 aaagataa 386  Q
    ||||||||    
T  45730721 aaagataa 45730714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 5384604 - 5384479
Alignment:
Q  281 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 379  Q
    |||||||||  ||| |||||||| ||||| ||| |||| ||||| ||||||   |||||||| |||||||||||||  ||| ||||||||| | |||| |    
T  5384604 gtgatacaccgttaaatctgatgaacctcattt-atcccacggtcttctttttaagaggtttaaaattaataaaattggaccaaattgatgttgaaaaca 5384506  T
Q  380 aagataaaggaccattttaaaacgttt 406  Q
    |||||| |||||||  || ||||||||    
T  5384505 aagatagaggaccaaattgaaacgttt 5384479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 21247362 - 21247292
Alignment:
Q  338 gtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    |||| ||||||||||||||  || ||| | |||| ||||| |||||||| |||||||||| ||||||||||    
T  21247362 gtttaaaattaataaaatagaaccaaaattatgactaaaacaaagataagggaccattttgaaacgtttaa 21247292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 281 - 408
Target Start/End: Original strand, 23153563 - 23153690
Alignment:
Q  281 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 379  Q
    |||||||||  |||||||||||||||||||||| ||||||| || ||||||   |||||||| ||||||||||||||||| |||||||||||| |||| |    
T  23153563 gtgatacaccgttagatctgatggacctccttt-atccaacagtcttctttttgagaggtttaaaattaataaaatatgattaaattgatgataaaaaca 23153661  T
Q  380 aagataaaggaccattttaaaacgtttaa 408  Q
    |||||||| |||||  || ||||||||||    
T  23153662 aagataaatgaccaaattgaaacgtttaa 23153690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 280 - 408
Target Start/End: Complemental strand, 35044804 - 35044675
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaata-tgactaaattgatgattaaaa 377  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| ||||||   ||   ||| |||||||||||| | |||| ||||||||||||||||    
T  35044804 ggtgatacactcttagatctaatggacctccttt-atccaacggtcttctttttaaggattttaaaattaataaaaaaatgaccaaattgatgattaaaa 35044706  T
Q  378 gaaagataaaggaccattttaaaacgtttaa 408  Q
     |||||||||||| |||||| ||||||||||    
T  35044705 caaagataaaggatcattttgaaacgtttaa 35044675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 36584837 - 36584965
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    |||||| |||| |||||| | ||||||||||||| |||||||||| ||| ||   || | ||| |||||||||||||||||| |||||||||| |||||     
T  36584837 ggtgatccactcttagatataatggacctccttt-atccaacggtcttcgttttaagggctttaaaattaataaaatatgaccaaattgatgactaaaat 36584935  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||||||||||| ||| ||||||    
T  36584936 aaagataaaggaccattttgaaatgtttaa 36584965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 400
Target Start/End: Original strand, 47536782 - 47536902
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  ||||||||||| |||||| |||||||||||||| ||||||   ||| |||| |||| ||||||||| ||| ||||||||||| ||||     
T  47536782 ggtgatacaccattagatctgatagacctc-ttttatccaacggtcttctttttgagaagtttaaaatcaataaaataggaccaaattgatgataaaaac 47536880  T
Q  379 aaagataaaggaccattttaaa 400  Q
    ||||||||||||||| ||||||    
T  47536881 aaagataaaggaccaatttaaa 47536902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 281 - 408
Target Start/End: Complemental strand, 47535842 - 47535715
Alignment:
Q  281 gtgatacacttttagatctgatggacctccttttatccaacggtt-tctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 379  Q
    |||||||||  |||||||||||||| ||||||| ||||||| ||  |||||   |||||||| |||||||||||||| ||| ||||||||||| |||| |    
T  47535842 gtgatacaccgttagatctgatggatctccttt-atccaacagtcatctttttgagaggtttaaaattaataaaataggaccaaattgatgataaaaaca 47535744  T
Q  380 aagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||||||  || ||||||||||    
T  47535743 aagataaaggaccaaattgaaacgtttaa 47535715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 408
Target Start/End: Original strand, 43704398 - 43704512
Alignment:
Q  294 agatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggacc 392  Q
    ||||| |||||| ||||||| |||||||||| ||||||   || ||||| |||||||||||||| || |||| |||||| ||||| ||||||||||||||    
T  43704398 agatccgatggatctccttt-atccaacggtcttctttttaaggggtttaaaattaataaaataggattaaaatgatgactaaaacaaagataaaggacc 43704496  T
Q  393 attttaaaacgtttaa 408  Q
    ||||| ||||||||||    
T  43704497 attttgaaacgtttaa 43704512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 35045838 - 35045954
Alignment:
Q  292 ttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaagga 390  Q
    ||||||| |||||| ||||||| |||||||||| ||||||   ||  |||| |||||||||||||| ||  |||||||||||||||| ||||||||| ||    
T  35045838 ttagatccgatggatctccttt-atccaacggtattctttttaaggagtttaaaattaataaaataggatcaaattgatgattaaaacaaagataaatga 35045936  T
Q  391 ccattttaaaacgtttaa 408  Q
    ||||||| ||||||||||    
T  35045937 ccattttgaaacgtttaa 35045954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 280 - 408
Target Start/End: Complemental strand, 40321253 - 40321125
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| ||||||   |    ||| |||||||||||| | | | ||||||||||||||||     
T  40321253 ggtgatacactgttagatctaatggacctccttt-atccaacggtcttctttttaatgattttaaaattaataaaaaaggcccaaattgatgattaaaac 40321155  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||||||| |||||| ||||||||||    
T  40321154 aaagataaaggatcattttgaaacgtttaa 40321125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 42520405 - 42520289
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggttt-ctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  ||||||||||| |||||||||| |||||||||| | ||||   |  ||||| ||||| |||||||||||| |||||||||| |||||     
T  42520405 ggtgatacaccgttagatctgatagacctccttt-atccaacggtctactttttaatgggtttaaaattgataaaatatgacaaaattgatgactaaaac 42520307  T
Q  379 aaagataaaggaccattt 396  Q
    ||||||| ||||||||||    
T  42520306 aaagatacaggaccattt 42520289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 42521190 - 42521318
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||| || |||   ||   ||| ||||| |||||||| ||| |||||||||| |||||     
T  42521190 ggtgatacactgttagatccgatggacctccttt-atccaacggtcttatttttaaggattttaaaattgataaaataggaccaaattgatgactaaaac 42521288  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    |||| || ||||||||||| ||||||||||    
T  42521289 aaaggtagaggaccattttgaaacgtttaa 42521318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 407
Target Start/End: Original strand, 40322225 - 40322295
Alignment:
Q  338 gtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccatttt-aaaacgttta 407  Q
    |||| |||||||||||||| ||  |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  40322225 gtttaaaattaataaaataggatcaaattgatgattaaaacaaagataaaagaccattttgaaaacgttta 40322295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 408
Target Start/End: Complemental strand, 43703237 - 43703109
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  ||||||| |||| ||||||||| |||||||||| ||||||   |||  ||| ||||||||||||||  || ||||||||||| |||      
T  43703237 ggtgatacaccgttagatccgatgcacctccttt-atccaacggtcttctttttaagaaatttaaaattaataaaatagtaccaaattgatgatgaaagc 43703139  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    | ||||||| |||||||||||||| |||||    
T  43703138 atagataaaagaccattttaaaacatttaa 43703109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 40881245 - 40881168
Alignment:
Q  310 cttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataa 386  Q
    ||||||||||||||| ||||||  ||| | ||| |||||||||||||||||| ||||||||||  |||| ||||||||    
T  40881245 cttttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacaaaaataaagataa 40881168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 41767096 - 41767224
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  ||||||| |||||||||||||  ||||||| || ||||||   |||||||| |||||||||||||| ||| ||| | |||| |||||     
T  41767096 ggtgatacaccgttagatccgatggacctcctta-atccaacagtcttctttttaagaggtttaaaattaataaaataggaccaaaataatgactaaaat 41767194  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    |||||||| |||||||||| ||||||||||    
T  41767195 aaagataagggaccattttgaaacgtttaa 41767224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 284 - 408
Target Start/End: Original strand, 44770550 - 44770674
Alignment:
Q  284 atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaag 382  Q
    ||||||| ||||||| ||| |||||| ||| |||||||||| ||||||   || ||||| |||||||||||||| ||  |||||||||| ||||| ||||    
T  44770550 atacactgttagatccgatagacctcattt-atccaacggtcttctttttaaggggtttaaaattaataaaataggatcaaattgatgactaaaacaaag 44770648  T
Q  383 ataaaggaccattttaaaacgtttaa 408  Q
     ||||||||||||||||||| |||||    
T  44770649 ctaaaggaccattttaaaacatttaa 44770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 43415957 - 43416028
Alignment:
Q  337 ggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| |||||||||||||  ||||||| |||||| ||||| ||||||||| ||||||||| ||||||||||    
T  43415957 ggtttaaaattaataaaatcggactaaaatgatgactaaaacaaagataaaagaccattttgaaacgtttaa 43416028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 44769862 - 44769749
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||| |||||| ||||||||||||||  ||||||| || ||| ||   || | ||| |||||||||||||||||  |||||||||| |||||     
T  44769862 ggtgatacactgttagatatgatggacctcctt--atccaacagtcttcattttaagggttttaaaattaataaaatatgatcaaattgatgactaaaac 44769765  T
Q  379 aaagataaaggaccat 394  Q
    ||||||||| ||||||    
T  44769764 aaagataaatgaccat 44769749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 12820031 - 12820158
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||||  |||||| ||||| ||||||||| |||||||||| ||||||   |||| ||| |||||||||||||| ||| |||| || ||  ||||     
T  12820031 ggtgatacacagttagatatgatgaacctccttt-atccaacggtcttctttttgagagatttaaaattaataaaataggaccaaatcgacgacgaaaac 12820129  T
Q  379 aaagataaaggaccattttaaaacgtttaa 408  Q
    |||||| ||||||||  |||||||||||||    
T  12820130 aaagat-aaggaccaaattaaaacgtttaa 12820158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 43414498 - 43414437
Alignment:
Q  347 taataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||  || ||||||||||| |||| | ||||||||||||||||| ||||||||||    
T  43414498 taataaaatagtaccaaattgatgatgaaaacatagataaaggaccattttgaaacgtttaa 43414437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 23768471 - 23768545
Alignment:
Q  333 tagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||| ||| |||||||||||||| ||| ||||||||||  |||| |||||| |||||||| |||||||| |||||    
T  23768471 tagagatttaaaattaataaaataggaccaaattgatgacgaaaacaaagat-aaggaccaatttaaaacatttaa 23768545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 9189546 - 9189450
Alignment:
Q  312 tttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 408  Q
    ||||||||||||| ||||||  ||| | ||| |||||||||||||||||| ||||||||||   ||| |||||| ||||||||  || ||||||||||    
T  9189546 tttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacagaaacaaagat-aaggaccaaattgaaacgtttaa 9189450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 409
Target Start/End: Complemental strand, 32285 - 32157
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 378  Q
    ||||||||| | ||||||||||||| ||||  |||||||||  || |||||||  || ||||| |||||||||||||| ||| |||||||||  |||||     
T  32285 ggtgatacattgttagatctgatgggcctc--tttatccaatagtcttctttctaaggggtttaaaattaataaaataggaccaaattgatggctaaaac 32188  T
Q  379 aaagataaaggaccattttaaaacgtttaac 409  Q
    |||||||||  |||| |||||||||||||||    
T  32187 aaagataaataaccaatttaaaacgtttaac 32157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 409
Target Start/End: Complemental strand, 28016 - 27886
Alignment:
Q  280 ggtgatacacttttagatctgatggacctccttttatccaac---ggtttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaa 376  Q
    ||||||||||||||||||||||||||||||  |||||||||    |  ||||||   || | ||| |||||||||||||| ||| || ||||||  ||||    
T  28016 ggtgatacacttttagatctgatggacctc--tttatccaaaatagtcttctttttaagggatttaaaattaataaaataggaccaacttgatggctaaa 27919  T
Q  377 agaaagataaaggaccattttaaaacgtttaac 409  Q
    | ||||||||| ||||||||| |||||||||||    
T  27918 acaaagataaatgaccattttgaaacgtttaac 27886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 85038 - 85115
Alignment:
Q  310 cttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataa 386  Q
    ||||||||||||||| ||||||  ||| | ||| |||||||||||||||||| ||||||||||  |||| ||||||||    
T  85038 cttttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacaaaaataaagataa 85115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 48147 - 48182
Alignment:
Q  164 tgttgatgatttctggatttaagaaattggaggtgt 199  Q
    |||||| |||||||||||||||||||||||||||||    
T  48147 tgttgacgatttctggatttaagaaattggaggtgt 48182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University